Wall clock time and date at job start Sat Apr 11 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99864 * 2 1 4 4 C 1.53000 * 109.47174 * 124.99749 * 3 2 1 5 5 C 1.53006 * 109.46738 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.46628 * 180.02562 * 5 4 3 7 7 C 1.46905 * 110.99952 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46649 * 35.00303 * 7 6 5 9 9 C 1.52988 * 109.47390 * 275.00066 * 7 6 5 10 10 C 1.53004 * 109.47443 * 154.99539 * 7 6 5 11 11 H 1.09001 * 109.49823 * 304.94011 * 10 7 6 12 12 C 1.53039 * 109.52629 * 184.85778 * 10 7 6 13 13 C 1.53070 * 109.65812 * 178.73436 * 12 10 7 14 14 C 1.53195 * 109.29524 * 61.15209 * 13 12 10 15 15 N 1.46919 * 108.89273 * 305.57804 * 14 13 12 16 16 C 1.34784 * 120.63188 * 233.51696 * 15 14 13 17 17 O 1.21280 * 119.99866 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99526 * 359.97438 * 16 15 14 19 19 S 1.81003 * 109.46503 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99581 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00071 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99586 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00475 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99602 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46908 * 59.99907 * 24 22 20 26 26 H 1.48498 * 109.47108 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47157 * 300.00075 * 24 22 20 28 28 C 1.46928 * 118.73982 * 53.53793 * 15 14 13 29 29 H 1.08001 * 120.00088 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99855 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00088 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47140 * 4.99753 * 3 2 1 33 33 H 1.09004 * 109.46833 * 244.99919 * 3 2 1 34 34 H 1.08994 * 109.47146 * 60.00264 * 4 3 2 35 35 H 1.08997 * 109.47022 * 299.99930 * 4 3 2 36 36 H 1.08994 * 109.46923 * 60.00328 * 5 4 3 37 37 H 1.09004 * 109.47215 * 300.00137 * 5 4 3 38 38 H 1.00896 * 111.00564 * 56.04765 * 6 5 4 39 39 H 1.08999 * 109.47866 * 179.97438 * 9 7 6 40 40 H 1.09003 * 109.47418 * 299.99767 * 9 7 6 41 41 H 1.09008 * 109.47295 * 59.99359 * 9 7 6 42 42 H 1.09007 * 109.45640 * 298.69250 * 12 10 7 43 43 H 1.09000 * 109.45893 * 58.66041 * 12 10 7 44 44 H 1.08997 * 109.38860 * 301.27396 * 13 12 10 45 45 H 1.09003 * 109.62046 * 181.16739 * 13 12 10 46 46 H 1.09002 * 109.58720 * 185.71834 * 14 13 12 47 47 H 1.08996 * 109.58651 * 65.43731 * 14 13 12 48 48 H 1.08996 * 109.47104 * 299.99859 * 18 16 15 49 49 H 1.08994 * 109.47167 * 60.00297 * 18 16 15 50 50 H 0.96998 * 120.00061 * 180.02562 * 23 22 20 51 51 H 1.08998 * 109.58787 * 66.18123 * 28 15 14 52 52 H 1.09007 * 109.58600 * 186.46436 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.8004 2.6580 1.1812 6 7 4.7336 2.6847 2.3154 7 6 5.4882 3.9447 2.3468 8 1 4.8500 4.7590 2.0034 9 6 6.7081 3.8316 1.4304 10 6 5.9497 4.2274 3.7779 11 1 5.0884 4.2211 4.4459 12 6 6.6303 5.5969 3.8348 13 6 7.0652 5.8965 5.2715 14 6 8.0702 4.8343 5.7281 15 7 7.4752 3.5042 5.5398 16 6 7.4173 2.6269 6.5614 17 8 6.9239 1.5319 6.3930 18 6 7.9665 3.0065 7.9125 19 16 7.7433 1.6274 9.0634 20 6 8.4514 2.3254 10.5181 21 1 8.8521 3.3281 10.4960 22 6 8.4950 1.5862 11.6921 23 7 8.0071 0.3640 11.7189 24 14 9.2463 2.3260 13.2341 25 1 8.4981 3.5524 13.6099 26 1 9.1718 1.3407 14.3427 27 1 10.6669 2.6726 12.9754 28 6 6.9448 3.1484 4.2166 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5067 1.0921 35 1 2.4772 1.2357 2.1130 36 1 3.0957 3.4847 1.2705 37 1 4.3583 2.7551 0.2497 38 1 5.3564 1.8912 2.2900 39 1 7.2677 4.7667 1.4533 40 1 7.3462 3.0174 1.7738 41 1 6.3792 3.6303 0.4108 42 1 7.5058 5.5945 3.1854 43 1 5.9318 6.3637 3.4997 44 1 6.1931 5.8771 5.9250 45 1 7.5313 6.8809 5.3151 46 1 8.3060 4.9833 6.7818 47 1 8.9812 4.9143 5.1350 48 1 9.0283 3.2353 7.8217 49 1 7.4368 3.8822 8.2871 50 1 8.0373 -0.1524 12.5394 51 1 7.7627 3.0918 3.4983 52 1 6.4401 2.1839 4.2725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698926976.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:37 Heat of formation + Delta-G solvation = -37.295341 kcal Electronic energy + Delta-G solvation = -27198.077491 eV Core-core repulsion = 23516.250856 eV Total energy + Delta-G solvation = -3681.826635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.15045 -38.33690 -36.91640 -35.69398 -33.39519 -32.40240 -32.06481 -30.63074 -29.35166 -28.23062 -25.64851 -25.53822 -24.91380 -24.00128 -21.81752 -21.60531 -20.09150 -19.77281 -18.82964 -17.63121 -16.68671 -16.34604 -15.84981 -15.50772 -15.21259 -15.11314 -14.97729 -14.77857 -14.58905 -14.16610 -14.03023 -13.67911 -13.52636 -13.33540 -13.10344 -13.01133 -12.71882 -12.60579 -12.37460 -12.29284 -11.95687 -11.85143 -11.73095 -11.42458 -11.19142 -11.09175 -11.03139 -11.02000 -11.00297 -10.80897 -10.73906 -10.67764 -10.43639 -9.77621 -9.64213 -9.26143 -9.03219 -8.61702 -8.37627 -8.18452 -6.46222 -6.18457 -3.88735 1.96495 3.00981 3.14297 3.25235 3.28334 3.31336 3.65673 3.81074 4.23219 4.47082 4.51603 4.62976 4.67581 4.71442 4.82272 4.87439 4.94076 5.01744 5.04863 5.08451 5.14719 5.16330 5.17094 5.21709 5.29156 5.39993 5.42649 5.45773 5.47495 5.55766 5.59936 5.63878 5.68504 5.73217 5.75865 5.83485 5.88395 5.89658 5.95273 6.00240 6.03243 6.14067 6.16575 6.30429 6.32053 6.44809 6.74792 6.83873 7.16031 7.61721 7.66654 8.37835 8.65804 9.26474 10.88879 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.002133 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.873145 B =13125.194763 C =14910.980093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.093 4.093 4 C -0.116 4.116 5 C 0.061 3.939 6 N -0.685 5.685 7 C 0.094 3.906 8 H 0.078 0.922 9 C -0.189 4.189 10 C -0.090 4.090 11 H 0.083 0.917 12 C -0.114 4.114 13 C -0.135 4.135 14 C 0.107 3.893 15 N -0.619 5.619 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.150 4.150 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.117 3.883 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.344 0.656 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.269 0.731 51 H 0.060 0.940 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 10.219 -25.520 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.130 4.130 4 C -0.154 4.154 5 C -0.069 4.069 6 N -0.315 5.315 7 C -0.017 4.017 8 H 0.096 0.904 9 C -0.248 4.248 10 C -0.110 4.110 11 H 0.102 0.898 12 C -0.152 4.152 13 C -0.173 4.173 14 C -0.016 4.016 15 N -0.355 5.355 16 C 0.322 3.678 17 O -0.390 6.390 18 C -0.301 4.301 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 C -0.005 4.005 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.163 0.837 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.082 0.918 48 H 0.106 0.894 49 H 0.106 0.894 50 H 0.078 0.922 51 H 0.078 0.922 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.858 8.620 -25.194 27.763 hybrid contribution 1.696 1.685 0.419 2.428 sum -6.162 10.306 -24.775 27.531 Atomic orbital electron populations 1.23860 0.96008 1.01819 1.01667 1.22968 0.96056 0.98561 0.99435 1.20724 0.98204 0.95463 0.98640 1.21528 0.98003 0.97034 0.98790 1.21985 0.95064 0.98287 0.91526 1.60539 1.22281 1.04348 1.44375 1.21503 0.93236 0.92516 0.94418 0.90384 1.22639 0.99471 1.02990 0.99669 1.21509 0.98778 0.94643 0.96070 0.89836 1.21607 1.00326 0.96507 0.96783 1.21918 0.99975 0.98464 0.96956 1.21695 0.95444 0.81941 1.02557 1.48081 1.61589 1.15194 1.10633 1.20306 0.78218 0.84098 0.85158 1.90687 1.43824 1.21498 1.83024 1.23551 1.03357 1.06769 0.96397 1.85404 1.79681 1.15587 1.02737 1.22824 1.45658 1.03485 0.96381 0.91038 1.24987 0.95230 0.94750 0.98616 1.70007 1.42971 1.09105 1.28191 0.86236 0.79508 0.78790 0.81029 1.19951 1.20826 1.19968 1.21630 0.96128 0.99469 0.83299 0.88663 0.88571 0.87399 0.91506 0.91247 0.91857 0.90683 0.91188 0.95443 0.83741 0.91616 0.91766 0.92959 0.91749 0.91880 0.91257 0.90784 0.89340 0.91759 0.89412 0.89360 0.92156 0.92189 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.37 14.32 29.01 0.42 -0.96 16 2 C -0.15 -1.10 9.52 -36.03 -0.34 -1.45 16 3 C -0.09 -0.62 5.66 -27.88 -0.16 -0.78 16 4 C -0.12 -0.89 5.46 -26.73 -0.15 -1.03 16 5 C 0.06 0.46 5.48 -3.82 -0.02 0.44 16 6 N -0.68 -6.24 5.94 -106.72 -0.63 -6.87 16 7 C 0.09 0.77 2.37 -67.71 -0.16 0.61 16 8 H 0.08 0.62 7.80 -51.93 -0.41 0.21 16 9 C -0.19 -1.33 8.44 37.15 0.31 -1.01 16 10 C -0.09 -0.90 2.33 -90.50 -0.21 -1.11 16 11 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 12 C -0.11 -0.94 4.88 -26.67 -0.13 -1.07 16 13 C -0.13 -1.23 6.09 -26.59 -0.16 -1.40 16 14 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 15 N -0.62 -9.07 2.97 -172.77 -0.51 -9.58 16 16 C 0.53 10.50 7.72 -10.98 -0.08 10.42 16 17 O -0.52 -12.12 15.27 5.56 0.08 -12.04 16 18 C -0.15 -3.13 4.50 36.01 0.16 -2.97 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 24 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 C 0.12 1.46 5.09 -3.71 -0.02 1.44 16 29 H 0.10 0.61 7.84 -52.49 -0.41 0.20 16 30 H 0.10 0.60 8.06 -52.49 -0.42 0.17 16 31 H 0.11 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 37 H 0.03 0.19 7.43 -51.93 -0.39 -0.20 16 38 H 0.34 3.17 7.96 -39.29 -0.31 2.86 16 39 H 0.06 0.42 6.59 -51.93 -0.34 0.08 16 40 H 0.06 0.49 6.22 -51.93 -0.32 0.16 16 41 H 0.05 0.34 7.45 -51.92 -0.39 -0.04 16 42 H 0.06 0.48 6.63 -51.93 -0.34 0.14 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 49 H 0.09 1.71 7.69 -51.92 -0.40 1.31 16 50 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 51 H 0.06 0.66 6.06 -51.93 -0.31 0.34 16 52 H 0.10 1.43 6.49 -51.92 -0.34 1.09 16 LS Contribution 417.32 15.07 6.29 6.29 Total: -1.00 -33.73 417.32 -10.92 -44.66 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -9.28 Total: 1.34 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.37 Total: -10.77 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -0.41 Total: -42.12 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.73 -10.92 -44.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698926976.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.363 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds