Wall clock time and date at job start Sat Apr 11 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99864 * 2 1 4 4 C 1.53000 * 109.47174 * 124.99749 * 3 2 1 5 5 C 1.53006 * 109.46738 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.46628 * 180.02562 * 5 4 3 7 7 C 1.46905 * 110.99952 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46649 * 35.00303 * 7 6 5 9 9 C 1.52988 * 109.47390 * 275.00066 * 7 6 5 10 10 C 1.53004 * 109.47443 * 154.99539 * 7 6 5 11 11 H 1.09001 * 109.49823 * 304.94011 * 10 7 6 12 12 C 1.53039 * 109.52629 * 184.85778 * 10 7 6 13 13 C 1.53070 * 109.65812 * 178.73436 * 12 10 7 14 14 C 1.53195 * 109.29524 * 61.15209 * 13 12 10 15 15 N 1.46919 * 108.89273 * 305.57804 * 14 13 12 16 16 C 1.34784 * 120.63188 * 233.51696 * 15 14 13 17 17 O 1.21280 * 119.99866 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99526 * 359.97438 * 16 15 14 19 19 S 1.81003 * 109.46503 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99581 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00071 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99586 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00475 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99602 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46908 * 59.99907 * 24 22 20 26 26 H 1.48498 * 109.47108 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47157 * 300.00075 * 24 22 20 28 28 C 1.46928 * 118.73982 * 53.53793 * 15 14 13 29 29 H 1.08001 * 120.00088 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99855 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00088 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47140 * 4.99753 * 3 2 1 33 33 H 1.09004 * 109.46833 * 244.99919 * 3 2 1 34 34 H 1.08994 * 109.47146 * 60.00264 * 4 3 2 35 35 H 1.08997 * 109.47022 * 299.99930 * 4 3 2 36 36 H 1.08994 * 109.46923 * 60.00328 * 5 4 3 37 37 H 1.09004 * 109.47215 * 300.00137 * 5 4 3 38 38 H 1.00896 * 111.00564 * 56.04765 * 6 5 4 39 39 H 1.08999 * 109.47866 * 179.97438 * 9 7 6 40 40 H 1.09003 * 109.47418 * 299.99767 * 9 7 6 41 41 H 1.09008 * 109.47295 * 59.99359 * 9 7 6 42 42 H 1.09007 * 109.45640 * 298.69250 * 12 10 7 43 43 H 1.09000 * 109.45893 * 58.66041 * 12 10 7 44 44 H 1.08997 * 109.38860 * 301.27396 * 13 12 10 45 45 H 1.09003 * 109.62046 * 181.16739 * 13 12 10 46 46 H 1.09002 * 109.58720 * 185.71834 * 14 13 12 47 47 H 1.08996 * 109.58651 * 65.43731 * 14 13 12 48 48 H 1.08996 * 109.47104 * 299.99859 * 18 16 15 49 49 H 1.08994 * 109.47167 * 60.00297 * 18 16 15 50 50 H 0.96998 * 120.00061 * 180.02562 * 23 22 20 51 51 H 1.08998 * 109.58787 * 66.18123 * 28 15 14 52 52 H 1.09007 * 109.58600 * 186.46436 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.8004 2.6580 1.1812 6 7 4.7336 2.6847 2.3154 7 6 5.4882 3.9447 2.3468 8 1 4.8500 4.7590 2.0034 9 6 6.7081 3.8316 1.4304 10 6 5.9497 4.2274 3.7779 11 1 5.0884 4.2211 4.4459 12 6 6.6303 5.5969 3.8348 13 6 7.0652 5.8965 5.2715 14 6 8.0702 4.8343 5.7281 15 7 7.4752 3.5042 5.5398 16 6 7.4173 2.6269 6.5614 17 8 6.9239 1.5319 6.3930 18 6 7.9665 3.0065 7.9125 19 16 7.7433 1.6274 9.0634 20 6 8.4514 2.3254 10.5181 21 1 8.8521 3.3281 10.4960 22 6 8.4950 1.5862 11.6921 23 7 8.0071 0.3640 11.7189 24 14 9.2463 2.3260 13.2341 25 1 8.4981 3.5524 13.6099 26 1 9.1718 1.3407 14.3427 27 1 10.6669 2.6726 12.9754 28 6 6.9448 3.1484 4.2166 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5067 1.0921 35 1 2.4772 1.2357 2.1130 36 1 3.0957 3.4847 1.2705 37 1 4.3583 2.7551 0.2497 38 1 5.3564 1.8912 2.2900 39 1 7.2677 4.7667 1.4533 40 1 7.3462 3.0174 1.7738 41 1 6.3792 3.6303 0.4108 42 1 7.5058 5.5945 3.1854 43 1 5.9318 6.3637 3.4997 44 1 6.1931 5.8771 5.9250 45 1 7.5313 6.8809 5.3151 46 1 8.3060 4.9833 6.7818 47 1 8.9812 4.9143 5.1350 48 1 9.0283 3.2353 7.8217 49 1 7.4368 3.8822 8.2871 50 1 8.0373 -0.1524 12.5394 51 1 7.7627 3.0918 3.4983 52 1 6.4401 2.1839 4.2725 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698926976.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:35 Heat of formation + Delta-G solvation = -57.906248 kcal Electronic energy + Delta-G solvation = -27198.971247 eV Core-core repulsion = 23516.250856 eV Total energy + Delta-G solvation = -3682.720391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.30039 -39.39930 -37.79322 -36.45280 -34.58780 -34.29385 -32.92015 -31.65550 -30.48990 -29.06445 -27.69107 -26.34346 -25.97902 -24.79867 -22.58974 -22.31401 -20.95291 -20.62955 -19.94791 -19.45604 -18.15497 -17.13619 -16.88457 -16.82602 -16.57199 -16.24911 -16.06788 -15.64310 -15.57978 -15.42349 -15.08702 -14.79338 -14.49686 -14.31539 -14.19656 -13.96607 -13.75999 -13.62631 -13.45281 -13.16553 -13.10613 -12.93528 -12.86397 -12.63336 -12.54700 -12.38411 -12.19062 -11.85331 -11.77648 -11.74914 -11.68740 -11.60638 -11.47736 -11.20625 -11.12812 -10.81280 -10.26350 -10.20199 -9.58796 -9.26189 -8.67592 -8.34101 -6.12974 1.25888 1.40312 1.44124 1.46033 1.55873 1.59972 2.14622 2.27923 2.99599 3.16080 3.26272 3.67159 3.79989 3.85164 3.93082 4.05341 4.08106 4.10154 4.21194 4.25278 4.29190 4.33976 4.38747 4.42879 4.45002 4.51996 4.57307 4.63637 4.66204 4.70479 4.78882 4.89496 4.91250 4.93794 4.98757 5.00860 5.06856 5.11667 5.17984 5.27236 5.27907 5.32326 5.38620 5.41168 5.54587 5.64104 5.76025 5.89045 6.19610 6.20465 6.33713 6.45956 7.06456 7.18010 8.74957 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.002133 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.873145 B =13125.194763 C =14910.980093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C -0.087 4.087 4 C -0.111 4.111 5 C 0.066 3.934 6 N -0.705 5.705 7 C 0.099 3.901 8 H 0.088 0.912 9 C -0.182 4.182 10 C -0.082 4.082 11 H 0.053 0.947 12 C -0.109 4.109 13 C -0.130 4.130 14 C 0.096 3.904 15 N -0.606 5.606 16 C 0.529 3.471 17 O -0.568 6.568 18 C -0.122 4.122 19 S -0.153 6.153 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.261 1.261 28 C 0.117 3.883 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.340 0.660 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.107 0.893 49 H 0.104 0.896 50 H 0.271 0.729 51 H 0.083 0.917 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 13.532 -26.868 30.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.183 4.183 3 C -0.125 4.125 4 C -0.149 4.149 5 C -0.063 4.063 6 N -0.336 5.336 7 C -0.012 4.012 8 H 0.106 0.894 9 C -0.241 4.241 10 C -0.102 4.102 11 H 0.071 0.929 12 C -0.147 4.147 13 C -0.168 4.168 14 C -0.026 4.026 15 N -0.340 5.340 16 C 0.317 3.683 17 O -0.446 6.446 18 C -0.273 4.273 19 S 0.074 5.926 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.186 1.186 26 H -0.204 1.204 27 H -0.185 1.185 28 C -0.005 4.005 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.158 0.842 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.122 0.878 46 H 0.102 0.898 47 H 0.110 0.890 48 H 0.125 0.875 49 H 0.122 0.878 50 H 0.080 0.920 51 H 0.101 0.899 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.612 11.994 -26.589 29.909 hybrid contribution 1.275 0.693 0.715 1.618 sum -5.337 12.688 -25.874 29.307 Atomic orbital electron populations 1.24015 0.96075 1.02426 1.01234 1.23104 0.96374 0.98944 0.99860 1.20684 0.98008 0.95279 0.98503 1.21463 0.97944 0.97235 0.98266 1.21952 0.94805 0.97986 0.91541 1.60536 1.22795 1.04729 1.45499 1.21471 0.93978 0.92325 0.93378 0.89376 1.22568 0.98616 1.03357 0.99544 1.21428 0.97023 0.95124 0.96599 0.92882 1.21611 1.01258 0.95283 0.96541 1.21915 0.98853 0.98985 0.97091 1.22068 0.97008 0.80363 1.03135 1.48130 1.60123 1.15630 1.10115 1.20147 0.78186 0.84209 0.85757 1.90668 1.46400 1.23782 1.83782 1.23359 1.04838 1.03736 0.95384 1.85606 1.80416 1.20879 1.05702 1.23161 1.45683 1.03972 0.96586 0.89898 1.26159 0.95466 0.95078 1.02537 1.70182 1.44421 1.10877 1.29304 0.84989 0.78975 0.78076 0.75859 1.18612 1.20380 1.18538 1.21782 0.97250 0.99106 0.82386 0.88115 0.88024 0.87397 0.91158 0.90143 0.92225 0.92867 0.91091 0.94089 0.84157 0.90227 0.92565 0.92202 0.89817 0.90126 0.92993 0.87840 0.89780 0.89049 0.87518 0.87790 0.91989 0.89938 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.73 14.32 67.77 0.97 -1.76 16 2 C -0.16 -2.36 9.52 25.64 0.24 -2.11 16 3 C -0.09 -1.10 5.66 29.85 0.17 -0.94 16 4 C -0.11 -1.72 5.46 30.60 0.17 -1.55 16 5 C 0.07 0.94 5.48 86.31 0.47 1.42 16 6 N -0.70 -12.69 5.94 -491.57 -2.92 -15.61 16 7 C 0.10 1.45 2.37 44.91 0.11 1.56 16 8 H 0.09 1.16 7.80 -2.39 -0.02 1.14 16 9 C -0.18 -2.04 8.44 71.98 0.61 -1.44 16 10 C -0.08 -1.53 2.33 -10.72 -0.02 -1.56 16 11 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 12 C -0.11 -1.42 4.88 30.63 0.15 -1.27 16 13 C -0.13 -1.98 6.09 30.68 0.19 -1.79 16 14 C 0.10 1.90 6.34 86.36 0.55 2.45 16 15 N -0.61 -17.33 2.97 -818.90 -2.44 -19.77 16 16 C 0.53 21.26 7.72 87.66 0.68 21.94 16 17 O -0.57 -28.12 15.27 -3.03 -0.05 -28.17 16 18 C -0.12 -5.12 4.50 71.24 0.32 -4.80 16 19 S -0.15 -8.80 20.57 -56.49 -1.16 -9.96 16 20 C -0.55 -31.76 9.50 67.95 0.65 -31.11 16 21 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -56.89 13.22 21.65 0.29 -56.60 16 24 Si 1.00 44.01 29.55 68.60 2.03 46.04 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 28 C 0.12 2.85 5.09 86.36 0.44 3.29 16 29 H 0.10 1.23 7.84 -2.91 -0.02 1.20 16 30 H 0.10 1.23 8.06 -2.91 -0.02 1.20 16 31 H 0.11 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.07 0.84 7.79 -2.39 -0.02 0.82 16 33 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.00 8.06 -2.39 -0.02 0.98 16 37 H 0.04 0.48 7.43 -2.38 -0.02 0.47 16 38 H 0.34 6.43 7.96 -89.70 -0.71 5.71 16 39 H 0.08 0.69 6.59 -2.39 -0.02 0.68 16 40 H 0.06 0.73 6.22 -2.39 -0.01 0.72 16 41 H 0.06 0.61 7.45 -2.38 -0.02 0.59 16 42 H 0.08 0.83 6.63 -2.38 -0.02 0.81 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.08 1.76 5.93 -2.39 -0.01 1.74 16 47 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.11 4.04 7.94 -2.40 -0.02 4.02 16 49 H 0.10 4.00 7.69 -2.40 -0.02 3.98 16 50 H 0.27 15.72 8.31 -92.71 -0.77 14.94 16 51 H 0.08 1.67 6.06 -2.39 -0.01 1.65 16 52 H 0.06 2.02 6.49 -2.38 -0.02 2.01 16 Total: -1.00 -77.35 417.32 2.06 -75.29 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.17 Total: 25.29 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 6.14 Total: -16.50 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -5.07 Total: -91.98 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.05 Total: -28.17 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.16 Total: -9.96 kcal Total: -77.35 2.06 -75.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698926976.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.380 kcal (2) G-P(sol) polarization free energy of solvation -77.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds