Wall clock time and date at job start Sat Apr 11 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 120.00080 * 2 1 4 4 C 1.52999 * 109.47252 * 125.00087 * 3 2 1 5 5 C 1.52994 * 109.47177 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47492 * 179.97438 * 5 4 3 7 7 C 1.46900 * 111.00296 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 184.92830 * 7 6 5 9 9 H 1.08994 * 109.58907 * 62.00866 * 8 7 6 10 10 C 1.53198 * 109.70282 * 301.65317 * 8 7 6 11 11 H 1.09002 * 109.49574 * 65.55513 * 10 8 7 12 12 C 1.53008 * 109.49511 * 305.49329 * 10 8 7 13 13 C 1.53038 * 109.30972 * 185.51021 * 10 8 7 14 14 C 1.53042 * 109.54028 * 61.36797 * 13 10 8 15 15 C 1.53193 * 109.30734 * 298.62973 * 14 13 10 16 16 N 1.46919 * 109.58650 * 182.29621 * 8 7 6 17 17 C 1.34785 * 120.63026 * 353.25928 * 16 8 7 18 18 O 1.21276 * 119.99793 * 354.62943 * 17 16 8 19 19 C 1.50701 * 119.99774 * 174.63251 * 17 16 8 20 20 S 1.81005 * 109.46543 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99538 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00194 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99959 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99804 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00161 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46990 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47118 * 119.99914 * 25 23 21 28 28 H 1.48495 * 109.47025 * 240.00257 * 25 23 21 29 29 H 1.07994 * 120.00414 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.99405 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00633 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.46747 * 5.00270 * 3 2 1 33 33 H 1.08997 * 109.47114 * 245.00518 * 3 2 1 34 34 H 1.09003 * 109.47095 * 60.00396 * 4 3 2 35 35 H 1.09000 * 109.47131 * 300.00687 * 4 3 2 36 36 H 1.09003 * 109.46992 * 60.00079 * 5 4 3 37 37 H 1.09000 * 109.47444 * 300.00242 * 5 4 3 38 38 H 1.00908 * 110.99469 * 56.04644 * 6 5 4 39 39 H 1.08994 * 109.46700 * 64.92725 * 7 6 5 40 40 H 1.08994 * 109.46708 * 304.92721 * 7 6 5 41 41 H 1.08993 * 109.46764 * 60.00141 * 12 10 8 42 42 H 1.08999 * 109.46630 * 179.97438 * 12 10 8 43 43 H 1.08996 * 109.46752 * 300.00145 * 12 10 8 44 44 H 1.09000 * 109.45372 * 181.38645 * 13 10 8 45 45 H 1.08996 * 109.46101 * 301.33866 * 13 10 8 46 46 H 1.08998 * 109.49825 * 58.58238 * 14 13 10 47 47 H 1.09003 * 109.49487 * 178.67961 * 14 13 10 48 48 H 1.08990 * 109.59116 * 294.84657 * 15 14 13 49 49 H 1.09006 * 109.58480 * 174.42350 * 15 14 13 50 50 H 1.09001 * 109.47244 * 299.99585 * 19 17 16 51 51 H 1.08998 * 109.47065 * 60.00636 * 19 17 16 52 52 H 0.96997 * 119.99958 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7996 2.6584 1.1819 6 7 4.7320 2.6856 2.3168 7 6 5.4848 3.9466 2.3496 8 6 6.5285 3.8885 3.4668 9 1 7.2357 3.0842 3.2648 10 6 5.8346 3.6372 4.8093 11 1 5.3788 2.6470 4.8034 12 6 4.7527 4.6961 5.0310 13 6 6.8674 3.7175 5.9357 14 6 7.4844 5.1177 5.9656 15 6 8.1970 5.3858 4.6363 16 7 7.2458 5.1688 3.5377 17 6 7.0394 6.1239 2.6094 18 8 6.3309 5.8958 1.6519 19 6 7.6891 7.4752 2.7613 20 16 7.2221 8.5293 1.3659 21 6 8.0942 10.0007 1.7888 22 1 8.6885 10.0361 2.6899 23 6 8.0183 11.1140 0.9633 24 7 7.2953 11.0704 -0.1357 25 14 8.9435 12.6738 1.4113 26 1 9.6779 12.4651 2.6850 27 1 9.9089 13.0039 0.3322 28 1 7.9798 13.7919 1.5724 29 1 -0.5400 0.9352 0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 3.7401 0.5066 1.0920 35 1 2.4773 1.2355 2.1130 36 1 3.0943 3.4846 1.2718 37 1 4.3573 2.7564 0.2506 38 1 5.3553 1.8924 2.2916 39 1 4.7998 4.7739 2.5348 40 1 5.9848 4.0961 1.3927 41 1 4.0190 4.6399 4.2269 42 1 4.2590 4.5166 5.9861 43 1 5.2091 5.6859 5.0379 44 1 6.3807 3.5146 6.8897 45 1 7.6505 2.9791 5.7636 46 1 6.6985 5.8585 6.1130 47 1 8.2028 5.1813 6.7829 48 1 9.0402 4.7035 4.5296 49 1 8.5526 6.4159 4.6136 50 1 7.3564 7.9358 3.6914 51 1 8.7725 7.3572 2.7813 52 1 7.2419 11.8484 -0.7124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698943144.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:55 Heat of formation + Delta-G solvation = -19.916924 kcal Electronic energy + Delta-G solvation = -27956.787926 eV Core-core repulsion = 24275.714876 eV Total energy + Delta-G solvation = -3681.073050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.59575 -37.56341 -37.04225 -35.29409 -33.48418 -32.46700 -32.40504 -30.50469 -29.47573 -27.08054 -26.33650 -25.50201 -24.56196 -23.79271 -21.63782 -21.44409 -20.18518 -19.97031 -18.39232 -17.62610 -16.81330 -16.14576 -15.83483 -15.47393 -15.32391 -14.81889 -14.77004 -14.73159 -14.33246 -14.18969 -13.93307 -13.82925 -13.42475 -13.26684 -13.09621 -12.88964 -12.57973 -12.39347 -12.18841 -11.95664 -11.75734 -11.68418 -11.57134 -11.44815 -11.08474 -11.03539 -11.00384 -10.99121 -10.91782 -10.76201 -10.69705 -10.45559 -10.29325 -9.79878 -9.56513 -9.11624 -9.08306 -8.42118 -8.23067 -8.07603 -6.50596 -6.22924 -3.93020 2.03547 2.90978 3.04881 3.20462 3.24831 3.29939 3.56557 4.19257 4.22179 4.60602 4.64311 4.70792 4.77167 4.81135 4.92573 5.00531 5.05972 5.12441 5.14348 5.22283 5.24377 5.30420 5.41436 5.44619 5.50030 5.57272 5.59820 5.64322 5.66926 5.69584 5.76014 5.80691 5.80825 5.86128 5.89196 6.03017 6.06416 6.09453 6.11540 6.12665 6.15985 6.26579 6.36357 6.39059 6.48006 6.53172 6.77959 7.08517 7.42150 7.58604 7.61619 8.34352 8.59203 9.22711 10.84525 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010582 B = 0.002637 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.457908 B =10616.986460 C =12833.796155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.096 4.096 4 C -0.110 4.110 5 C 0.063 3.937 6 N -0.695 5.695 7 C 0.060 3.940 8 C 0.156 3.844 9 H 0.062 0.938 10 C -0.091 4.091 11 H 0.087 0.913 12 C -0.143 4.143 13 C -0.116 4.116 14 C -0.139 4.139 15 C 0.109 3.891 16 N -0.613 5.613 17 C 0.535 3.465 18 O -0.513 6.513 19 C -0.152 4.152 20 S -0.061 6.061 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.330 0.670 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.088 0.912 51 H 0.087 0.913 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 -21.021 9.714 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.167 4.167 3 C -0.134 4.134 4 C -0.148 4.148 5 C -0.067 4.067 6 N -0.328 5.328 7 C -0.067 4.067 8 C 0.052 3.948 9 H 0.079 0.921 10 C -0.110 4.110 11 H 0.105 0.895 12 C -0.200 4.200 13 C -0.154 4.154 14 C -0.177 4.177 15 C -0.014 4.014 16 N -0.349 5.349 17 C 0.324 3.676 18 O -0.387 6.387 19 C -0.302 4.302 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.146 0.854 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.107 0.893 50 H 0.106 0.894 51 H 0.105 0.895 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.216 -20.999 8.576 23.519 hybrid contribution 2.137 1.134 0.769 2.539 sum -4.079 -19.865 9.345 22.329 Atomic orbital electron populations 1.23855 0.96031 1.01770 1.01949 1.22973 0.96015 0.98535 0.99223 1.20757 0.98367 0.95336 0.98953 1.21492 0.97746 0.97152 0.98380 1.21885 0.95341 0.97769 0.91681 1.60575 1.22548 1.05047 1.44584 1.22695 0.95155 0.91071 0.97789 1.21184 0.92926 0.85008 0.95694 0.92052 1.21379 0.95633 1.00602 0.93401 0.89516 1.21828 0.98335 0.98656 1.01197 1.21582 0.98341 0.96682 0.98747 1.21978 1.00633 0.98145 0.96937 1.21712 0.91193 1.02656 0.85847 1.48107 1.43635 1.15640 1.27556 1.20309 0.80655 0.85163 0.81499 1.90691 1.37934 1.79714 1.30384 1.23592 1.03220 0.96303 1.07123 1.85356 1.65315 1.07555 1.25201 1.22899 1.34685 0.98653 1.11981 0.90942 1.24993 0.95456 0.98654 0.94509 1.70026 1.37823 1.30363 1.12068 0.86127 0.79290 0.81641 0.78504 1.19615 1.20580 1.20559 0.88566 0.88723 0.87591 0.91300 0.90986 0.92247 0.91160 0.91014 0.95187 0.85355 0.89425 0.91550 0.91840 0.93401 0.92731 0.91889 0.92174 0.90886 0.91055 0.91662 0.89273 0.89382 0.89488 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 14.32 29.02 0.42 -1.10 16 2 C -0.15 -1.19 9.52 -36.02 -0.34 -1.53 16 3 C -0.10 -0.82 5.66 -27.88 -0.16 -0.98 16 4 C -0.11 -0.97 5.46 -26.73 -0.15 -1.11 16 5 C 0.06 0.69 5.68 -3.83 -0.02 0.67 16 6 N -0.70 -7.76 5.83 -113.79 -0.66 -8.43 16 7 C 0.06 0.85 3.04 -3.82 -0.01 0.84 16 8 C 0.16 1.91 2.80 -67.60 -0.19 1.72 16 9 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 10 C -0.09 -0.94 2.54 -90.49 -0.23 -1.18 16 11 H 0.09 0.87 7.76 -51.93 -0.40 0.46 16 12 C -0.14 -1.69 8.21 37.16 0.31 -1.38 16 13 C -0.12 -1.02 5.43 -26.69 -0.14 -1.17 16 14 C -0.14 -1.30 5.74 -26.61 -0.15 -1.45 16 15 C 0.11 1.21 6.35 -3.71 -0.02 1.18 16 16 N -0.61 -8.54 2.41 -165.22 -0.40 -8.94 16 17 C 0.54 9.84 7.55 -10.98 -0.08 9.75 16 18 O -0.51 -10.90 11.42 5.56 0.06 -10.84 16 19 C -0.15 -3.05 4.51 36.01 0.16 -2.89 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 21 C -0.53 -15.12 9.50 30.94 0.29 -14.83 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 25 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.10 0.72 7.84 -52.49 -0.41 0.30 16 30 H 0.09 0.61 8.06 -52.48 -0.42 0.19 16 31 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.33 3.20 8.67 -39.29 -0.34 2.86 16 39 H 0.09 1.47 5.54 -51.93 -0.29 1.19 16 40 H 0.07 1.13 6.26 -51.93 -0.33 0.81 16 41 H 0.06 0.84 6.40 -51.93 -0.33 0.51 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.77 6.33 -51.93 -0.33 0.44 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 50 H 0.09 1.67 7.92 -51.91 -0.41 1.26 16 51 H 0.09 1.63 7.72 -51.92 -0.40 1.23 16 52 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 412.03 15.07 6.21 6.21 Total: -1.00 -31.77 412.03 -11.02 -42.79 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -9.30 Total: 3.53 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -0.42 Total: -11.48 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.33 Total: -42.70 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.06 Total: -10.84 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.77 -11.02 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698943144.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.870 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds