Wall clock time and date at job start Sat Apr 11 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 120.00080 * 2 1 4 4 C 1.52999 * 109.47252 * 125.00087 * 3 2 1 5 5 C 1.52994 * 109.47177 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47492 * 179.97438 * 5 4 3 7 7 C 1.46900 * 111.00296 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 184.92830 * 7 6 5 9 9 H 1.08994 * 109.58907 * 62.00866 * 8 7 6 10 10 C 1.53198 * 109.70282 * 301.65317 * 8 7 6 11 11 H 1.09002 * 109.49574 * 65.55513 * 10 8 7 12 12 C 1.53008 * 109.49511 * 305.49329 * 10 8 7 13 13 C 1.53038 * 109.30972 * 185.51021 * 10 8 7 14 14 C 1.53042 * 109.54028 * 61.36797 * 13 10 8 15 15 C 1.53193 * 109.30734 * 298.62973 * 14 13 10 16 16 N 1.46919 * 109.58650 * 182.29621 * 8 7 6 17 17 C 1.34785 * 120.63026 * 353.25928 * 16 8 7 18 18 O 1.21276 * 119.99793 * 354.62943 * 17 16 8 19 19 C 1.50701 * 119.99774 * 174.63251 * 17 16 8 20 20 S 1.81005 * 109.46543 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99538 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00194 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99959 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99804 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00161 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46990 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47118 * 119.99914 * 25 23 21 28 28 H 1.48495 * 109.47025 * 240.00257 * 25 23 21 29 29 H 1.07994 * 120.00414 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.99405 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00633 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.46747 * 5.00270 * 3 2 1 33 33 H 1.08997 * 109.47114 * 245.00518 * 3 2 1 34 34 H 1.09003 * 109.47095 * 60.00396 * 4 3 2 35 35 H 1.09000 * 109.47131 * 300.00687 * 4 3 2 36 36 H 1.09003 * 109.46992 * 60.00079 * 5 4 3 37 37 H 1.09000 * 109.47444 * 300.00242 * 5 4 3 38 38 H 1.00908 * 110.99469 * 56.04644 * 6 5 4 39 39 H 1.08994 * 109.46700 * 64.92725 * 7 6 5 40 40 H 1.08994 * 109.46708 * 304.92721 * 7 6 5 41 41 H 1.08993 * 109.46764 * 60.00141 * 12 10 8 42 42 H 1.08999 * 109.46630 * 179.97438 * 12 10 8 43 43 H 1.08996 * 109.46752 * 300.00145 * 12 10 8 44 44 H 1.09000 * 109.45372 * 181.38645 * 13 10 8 45 45 H 1.08996 * 109.46101 * 301.33866 * 13 10 8 46 46 H 1.08998 * 109.49825 * 58.58238 * 14 13 10 47 47 H 1.09003 * 109.49487 * 178.67961 * 14 13 10 48 48 H 1.08990 * 109.59116 * 294.84657 * 15 14 13 49 49 H 1.09006 * 109.58480 * 174.42350 * 15 14 13 50 50 H 1.09001 * 109.47244 * 299.99585 * 19 17 16 51 51 H 1.08998 * 109.47065 * 60.00636 * 19 17 16 52 52 H 0.96997 * 119.99958 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7996 2.6584 1.1819 6 7 4.7320 2.6856 2.3168 7 6 5.4848 3.9466 2.3496 8 6 6.5285 3.8885 3.4668 9 1 7.2357 3.0842 3.2648 10 6 5.8346 3.6372 4.8093 11 1 5.3788 2.6470 4.8034 12 6 4.7527 4.6961 5.0310 13 6 6.8674 3.7175 5.9357 14 6 7.4844 5.1177 5.9656 15 6 8.1970 5.3858 4.6363 16 7 7.2458 5.1688 3.5377 17 6 7.0394 6.1239 2.6094 18 8 6.3309 5.8958 1.6519 19 6 7.6891 7.4752 2.7613 20 16 7.2221 8.5293 1.3659 21 6 8.0942 10.0007 1.7888 22 1 8.6885 10.0361 2.6899 23 6 8.0183 11.1140 0.9633 24 7 7.2953 11.0704 -0.1357 25 14 8.9435 12.6738 1.4113 26 1 9.6779 12.4651 2.6850 27 1 9.9089 13.0039 0.3322 28 1 7.9798 13.7919 1.5724 29 1 -0.5400 0.9352 0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 3.7401 0.5066 1.0920 35 1 2.4773 1.2355 2.1130 36 1 3.0943 3.4846 1.2718 37 1 4.3573 2.7564 0.2506 38 1 5.3553 1.8924 2.2916 39 1 4.7998 4.7739 2.5348 40 1 5.9848 4.0961 1.3927 41 1 4.0190 4.6399 4.2269 42 1 4.2590 4.5166 5.9861 43 1 5.2091 5.6859 5.0379 44 1 6.3807 3.5146 6.8897 45 1 7.6505 2.9791 5.7636 46 1 6.6985 5.8585 6.1130 47 1 8.2028 5.1813 6.7829 48 1 9.0402 4.7035 4.5296 49 1 8.5526 6.4159 4.6136 50 1 7.3564 7.9358 3.6914 51 1 8.7725 7.3572 2.7813 52 1 7.2419 11.8484 -0.7124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698943144.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:54 Heat of formation + Delta-G solvation = -38.349331 kcal Electronic energy + Delta-G solvation = -27957.587215 eV Core-core repulsion = 24275.714876 eV Total energy + Delta-G solvation = -3681.872339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77732 -38.79903 -37.91737 -36.12589 -34.62089 -34.56125 -33.31837 -31.32366 -30.93797 -28.18529 -27.62563 -27.21378 -25.55702 -24.74563 -22.59709 -22.33720 -21.39070 -20.61263 -19.84261 -19.18471 -18.09201 -17.22814 -16.90232 -16.84707 -16.75244 -16.19084 -15.97523 -15.62071 -15.45184 -15.39715 -15.07838 -14.94543 -14.50120 -14.46501 -14.21958 -14.03704 -13.80301 -13.50687 -13.37194 -13.17259 -13.00249 -12.92788 -12.65200 -12.62472 -12.55396 -12.39452 -12.35902 -11.88620 -11.87821 -11.71121 -11.66825 -11.55794 -11.32655 -11.17796 -11.17406 -10.43868 -10.26820 -10.19493 -9.56849 -9.19897 -8.67805 -8.36504 -6.14121 1.24794 1.39580 1.42021 1.44690 1.55677 1.59982 2.07430 2.25879 2.97648 3.15227 3.31844 3.65407 3.80533 3.88646 3.93591 3.98244 4.08039 4.11420 4.22440 4.24764 4.26049 4.39147 4.44055 4.44878 4.50501 4.54328 4.61172 4.64335 4.72656 4.80225 4.81623 4.89385 4.93228 4.98919 5.03380 5.05665 5.07737 5.18323 5.26900 5.29956 5.32337 5.36829 5.39613 5.40206 5.56218 5.72295 5.76665 5.91849 6.00874 6.18168 6.35620 6.52421 7.04912 7.20716 8.72897 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010582 B = 0.002637 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.457908 B =10616.986460 C =12833.796155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.097 4.097 4 C -0.096 4.096 5 C 0.064 3.936 6 N -0.682 5.682 7 C 0.076 3.924 8 C 0.154 3.846 9 H 0.083 0.917 10 C -0.082 4.082 11 H 0.099 0.901 12 C -0.139 4.139 13 C -0.111 4.111 14 C -0.134 4.134 15 C 0.099 3.901 16 N -0.600 5.600 17 C 0.531 3.469 18 O -0.552 6.552 19 C -0.125 4.125 20 S -0.149 6.149 21 C -0.545 4.545 22 H 0.081 0.919 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.256 1.256 27 H -0.273 1.273 28 H -0.274 1.274 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.017 0.983 38 H 0.344 0.656 39 H 0.053 0.947 40 H 0.030 0.970 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.057 0.943 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.100 0.900 51 H 0.103 0.897 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 -22.744 12.566 26.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.175 4.175 3 C -0.134 4.134 4 C -0.134 4.134 5 C -0.066 4.066 6 N -0.315 5.315 7 C -0.052 4.052 8 C 0.051 3.949 9 H 0.101 0.899 10 C -0.101 4.101 11 H 0.118 0.882 12 C -0.196 4.196 13 C -0.148 4.148 14 C -0.172 4.172 15 C -0.022 4.022 16 N -0.335 5.335 17 C 0.319 3.681 18 O -0.430 6.430 19 C -0.276 4.276 20 S 0.079 5.921 21 C -0.692 4.692 22 H 0.099 0.901 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.180 1.180 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.111 0.889 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.162 0.838 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.116 0.884 48 H 0.108 0.892 49 H 0.102 0.898 50 H 0.118 0.882 51 H 0.121 0.879 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.693 -22.766 11.476 25.923 hybrid contribution 1.621 1.565 -0.080 2.255 sum -3.072 -21.201 11.395 24.265 Atomic orbital electron populations 1.24017 0.96097 1.02376 1.01273 1.23024 0.96204 0.98454 0.99804 1.20738 0.98230 0.95753 0.98716 1.21365 0.97666 0.95855 0.98470 1.21873 0.95000 0.98647 0.91051 1.60527 1.22218 1.04346 1.44409 1.22276 0.94752 0.91304 0.96902 1.21359 0.92832 0.84436 0.96244 0.89937 1.21349 0.95564 1.00442 0.92777 0.88246 1.21776 0.98378 0.98296 1.01171 1.21577 0.98173 0.96642 0.98426 1.21966 1.00687 0.98172 0.96415 1.22047 0.91387 1.03193 0.85615 1.48101 1.43415 1.15056 1.26936 1.20074 0.80521 0.85390 0.82117 1.90712 1.39663 1.80307 1.32286 1.23405 1.04200 0.96072 1.03901 1.85524 1.66560 1.09904 1.30147 1.23221 1.34688 0.98987 1.12352 0.90077 1.26132 0.96291 1.02574 0.94201 1.70189 1.39527 1.31623 1.13433 0.84913 0.77835 0.76457 0.78801 1.17985 1.19885 1.19924 0.88852 0.87329 0.86354 0.92127 0.91200 0.90798 0.91206 0.93052 0.96437 0.83789 0.92846 0.95177 0.94133 0.91775 0.94604 0.90316 0.90358 0.92392 0.88417 0.89158 0.89789 0.88181 0.87858 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.87 14.32 67.78 0.97 -1.90 16 2 C -0.16 -2.34 9.52 25.65 0.24 -2.10 16 3 C -0.10 -1.64 5.66 29.85 0.17 -1.47 16 4 C -0.10 -1.64 5.46 30.59 0.17 -1.47 16 5 C 0.06 1.48 5.68 86.30 0.49 1.97 16 6 N -0.68 -15.25 5.83 -513.91 -3.00 -18.24 16 7 C 0.08 2.23 3.04 86.30 0.26 2.49 16 8 C 0.15 3.60 2.80 44.98 0.13 3.72 16 9 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 10 C -0.08 -1.52 2.54 -10.71 -0.03 -1.54 16 11 H 0.10 1.66 7.76 -2.39 -0.02 1.64 16 12 C -0.14 -3.20 8.21 71.98 0.59 -2.60 16 13 C -0.11 -1.50 5.43 30.62 0.17 -1.33 16 14 C -0.13 -2.05 5.74 30.67 0.18 -1.88 16 15 C 0.10 1.93 6.35 86.36 0.55 2.48 16 16 N -0.60 -16.23 2.41 -795.04 -1.92 -18.15 16 17 C 0.53 20.07 7.55 87.66 0.66 20.73 16 18 O -0.55 -25.02 11.42 -3.02 -0.03 -25.05 16 19 C -0.12 -5.08 4.51 71.24 0.32 -4.76 16 20 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 21 C -0.54 -31.38 9.50 67.96 0.65 -30.73 16 22 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 23 C 0.01 0.73 5.49 84.86 0.47 1.19 16 24 N -0.91 -56.37 13.22 21.65 0.29 -56.09 16 25 Si 1.00 43.90 29.55 68.60 2.03 45.92 16 26 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 H 0.09 1.36 7.84 -2.91 -0.02 1.34 16 30 H 0.11 1.23 8.06 -2.91 -0.02 1.21 16 31 H 0.12 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.06 1.11 7.79 -2.39 -0.02 1.09 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.34 6.19 8.67 -89.69 -0.78 5.41 16 39 H 0.05 1.94 5.54 -2.39 -0.01 1.93 16 40 H 0.03 1.11 6.26 -2.39 -0.01 1.09 16 41 H 0.04 1.11 6.40 -2.39 -0.02 1.09 16 42 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.03 0.95 5.97 -2.39 -0.01 0.93 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 1.09 6.33 -2.39 -0.02 1.07 16 47 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.08 1.73 5.93 -2.38 -0.01 1.72 16 50 H 0.10 3.81 7.92 -2.40 -0.02 3.79 16 51 H 0.10 3.84 7.72 -2.40 -0.02 3.82 16 52 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -73.47 412.03 2.29 -71.18 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.10 Total: 27.14 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 5.98 Total: -17.21 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -4.63 Total: -92.48 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.03 Total: -25.05 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -73.47 2.29 -71.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698943144.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.835 kcal (2) G-P(sol) polarization free energy of solvation -73.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds