Wall clock time and date at job start Sat Apr 11 2020 06:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46905 * 110.99677 * 2 1 4 4 C 1.53003 * 109.46990 * 160.26165 * 3 2 1 5 5 C 1.54263 * 110.03460 * 291.75261 * 4 3 2 6 6 C 1.54892 * 104.19497 * 217.10338 * 5 4 3 7 7 C 1.54890 * 102.74865 * 37.94232 * 6 5 4 8 8 C 1.53875 * 110.03351 * 174.58306 * 4 3 2 9 9 C 1.46893 * 111.00137 * 236.04402 * 2 1 3 10 10 C 1.53001 * 109.47323 * 293.95148 * 9 2 1 11 11 H 1.09005 * 109.99520 * 64.64045 * 10 9 2 12 12 C 1.54373 * 109.90273 * 185.70326 * 10 9 2 13 13 C 1.55153 * 102.91615 * 141.57837 * 12 10 9 14 14 C 1.54906 * 101.62001 * 324.54752 * 13 12 10 15 15 N 1.47021 * 109.88136 * 303.54636 * 10 9 2 16 16 C 1.34774 * 125.64742 * 61.68022 * 15 10 9 17 17 O 1.21278 * 120.00313 * 359.97438 * 16 15 10 18 18 C 1.50699 * 119.99822 * 179.97438 * 16 15 10 19 19 S 1.81003 * 109.47193 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00103 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00161 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00034 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00310 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00053 * 359.97438 * 22 20 19 25 25 H 1.48510 * 109.47078 * 89.99887 * 24 22 20 26 26 H 1.48493 * 109.47545 * 209.99977 * 24 22 20 27 27 H 1.48499 * 109.47047 * 330.00319 * 24 22 20 28 28 H 1.09005 * 109.46919 * 177.65456 * 1 2 3 29 29 H 1.09005 * 109.47217 * 297.65466 * 1 2 3 30 30 H 1.08995 * 109.47128 * 57.65202 * 1 2 3 31 31 H 1.09000 * 109.46806 * 280.25873 * 3 2 1 32 32 H 1.09000 * 109.47512 * 40.26393 * 3 2 1 33 33 H 1.09005 * 110.01830 * 53.19509 * 4 3 2 34 34 H 1.08999 * 110.48656 * 335.78481 * 5 4 3 35 35 H 1.08999 * 110.48770 * 98.42594 * 5 4 3 36 36 H 1.08992 * 110.75811 * 279.62776 * 6 5 4 37 37 H 1.09003 * 110.75138 * 156.25505 * 6 5 4 38 38 H 1.08995 * 110.48625 * 203.37919 * 7 6 5 39 39 H 1.09006 * 110.48590 * 80.73215 * 7 6 5 40 40 H 1.08996 * 110.03280 * 238.57139 * 8 4 3 41 41 H 1.09002 * 110.02673 * 359.95502 * 8 4 3 42 42 H 1.09007 * 109.46918 * 173.95320 * 9 2 1 43 43 H 1.09000 * 109.46909 * 53.95341 * 9 2 1 44 44 H 1.08998 * 110.70040 * 23.23424 * 12 10 9 45 45 H 1.08996 * 110.75501 * 259.94627 * 12 10 9 46 46 H 1.09008 * 111.00300 * 206.45211 * 13 12 10 47 47 H 1.08997 * 111.00780 * 82.64567 * 13 12 10 48 48 H 1.09002 * 110.37085 * 155.83238 * 14 13 12 49 49 H 1.08998 * 110.36625 * 278.15328 * 14 13 12 50 50 H 1.09000 * 109.47469 * 299.99288 * 18 16 15 51 51 H 1.08998 * 109.47488 * 59.99721 * 18 16 15 52 52 H 0.96995 * 120.00533 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 3.4457 1.3611 0.4872 5 6 3.4981 0.9873 1.9829 6 6 4.6365 1.8682 2.5549 7 6 4.4534 3.2025 1.7901 8 6 4.0531 2.7696 0.3646 9 6 1.9954 -0.7660 -1.1375 10 6 1.6315 -2.2426 -0.9702 11 1 0.5495 -2.3671 -1.0135 12 6 2.3001 -3.0780 -2.0830 13 6 2.7193 -4.3737 -1.3396 14 6 3.1087 -3.8215 0.0544 15 7 2.1410 -2.7405 0.3159 16 6 1.7822 -2.2848 1.5324 17 8 0.9726 -1.3870 1.6291 18 6 2.3869 -2.8909 2.7725 19 16 1.7096 -2.0705 4.2369 20 6 2.5638 -2.9495 5.5027 21 1 3.2607 -3.7319 5.2408 22 6 2.3404 -2.6371 6.8365 23 7 2.9781 -3.2941 7.7822 24 14 1.1345 -1.2844 7.2897 25 1 -0.2219 -1.8657 7.4561 26 1 1.5598 -0.6479 8.5621 27 1 1.1068 -0.2642 6.2109 28 1 -0.3633 -1.0269 -0.0421 29 1 -0.3634 0.4770 0.9103 30 1 -0.3633 0.5498 -0.8681 31 1 1.9546 1.7762 -1.0113 32 1 1.3935 1.9918 0.6642 33 1 4.0304 0.6503 -0.0968 34 1 2.5516 1.2242 2.4687 35 1 3.7361 -0.0695 2.1039 36 1 5.6104 1.4294 2.3384 37 1 4.5083 2.0168 3.6272 38 1 5.3884 3.7623 1.7703 39 1 3.6610 3.7972 2.2448 40 1 4.9329 2.7421 -0.2782 41 1 3.3148 3.4603 -0.0428 42 1 3.0797 -0.6610 -1.1755 43 1 1.5611 -0.3873 -2.0627 44 1 3.1738 -2.5614 -2.4803 45 1 1.5888 -3.3023 -2.8778 46 1 3.5738 -4.8442 -1.8261 47 1 1.8834 -5.0691 -1.2648 48 1 3.0191 -4.6019 0.8101 49 1 4.1239 -3.4254 0.0354 50 1 2.1507 -3.9543 2.8096 51 1 3.4688 -2.7595 2.7507 52 1 2.8217 -3.0761 8.7143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700350496.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:07 Heat of formation + Delta-G solvation = -19.809924 kcal Electronic energy + Delta-G solvation = -29862.967903 eV Core-core repulsion = 26181.899493 eV Total energy + Delta-G solvation = -3681.068410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.07760 -38.38563 -36.96424 -36.08374 -32.36923 -31.70822 -30.80272 -29.49383 -28.62974 -28.36447 -26.22533 -25.53593 -24.99485 -22.97681 -21.28746 -21.10570 -20.34226 -19.35425 -18.62704 -17.55500 -16.73495 -16.47401 -15.79092 -15.37293 -14.98990 -14.84981 -14.73277 -14.15839 -14.01646 -13.94822 -13.73803 -13.35859 -13.20720 -13.06970 -12.87938 -12.75057 -12.55468 -12.19090 -11.83012 -11.65041 -11.54546 -11.38608 -11.33390 -11.17074 -11.00197 -10.95475 -10.93672 -10.84440 -10.66551 -10.62198 -10.45434 -10.42751 -10.30714 -10.04705 -9.79167 -8.93641 -8.87126 -8.38734 -8.36865 -7.60170 -6.78822 -6.22321 -3.91041 2.88115 3.32438 3.37476 3.43007 3.54805 3.74531 4.07523 4.38657 4.43498 4.56793 4.71393 4.83407 4.86219 4.88797 4.95272 5.04770 5.17140 5.23130 5.23977 5.34838 5.39004 5.45464 5.53549 5.55550 5.59187 5.67376 5.69804 5.72621 5.74279 5.79300 5.81358 5.89108 5.91822 5.94879 5.97560 6.02830 6.05609 6.09144 6.15054 6.19541 6.22776 6.41363 6.45703 6.49460 6.68023 6.76670 6.87729 7.38891 7.46697 7.98091 8.01344 8.49012 8.94418 9.24677 10.87284 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.004886 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.356016 B = 5729.359862 C = 7591.881246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.501 5.501 3 C 0.064 3.936 4 C -0.083 4.083 5 C -0.093 4.093 6 C -0.129 4.129 7 C -0.123 4.123 8 C -0.119 4.119 9 C 0.045 3.955 10 C 0.145 3.855 11 H 0.069 0.931 12 C -0.127 4.127 13 C -0.132 4.132 14 C 0.100 3.900 15 N -0.616 5.616 16 C 0.544 3.456 17 O -0.467 6.467 18 C -0.115 4.115 19 S -0.136 6.136 20 C -0.519 4.519 21 H 0.085 0.915 22 C 0.095 3.905 23 N -0.884 5.884 24 Si 0.856 3.144 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.234 1.234 28 H 0.066 0.934 29 H 0.066 0.934 30 H -0.006 1.006 31 H 0.020 0.980 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.063 0.937 50 H 0.085 0.915 51 H 0.087 0.913 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 5.256 -22.114 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.224 5.224 3 C -0.064 4.064 4 C -0.102 4.102 5 C -0.131 4.131 6 C -0.167 4.167 7 C -0.160 4.160 8 C -0.157 4.157 9 C -0.084 4.084 10 C 0.040 3.960 11 H 0.087 0.913 12 C -0.166 4.166 13 C -0.170 4.170 14 C -0.023 4.023 15 N -0.355 5.355 16 C 0.331 3.669 17 O -0.337 6.337 18 C -0.265 4.265 19 S 0.090 5.910 20 C -0.666 4.666 21 H 0.103 0.897 22 C -0.113 4.113 23 N -0.521 5.521 24 Si 0.681 3.319 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.158 1.158 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.012 0.988 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.081 0.919 50 H 0.103 0.897 51 H 0.105 0.895 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.038 6.392 -21.226 22.167 hybrid contribution 0.433 -0.326 -0.421 0.687 sum 0.471 6.066 -21.646 22.485 Atomic orbital electron populations 1.22090 0.86822 1.01249 0.98426 1.62249 1.08173 1.11909 1.40093 1.22249 0.95847 0.90158 0.98139 1.21732 0.94914 0.95572 0.98023 1.22146 0.98398 0.99511 0.93033 1.22546 0.99089 0.95290 0.99759 1.22337 1.00493 0.97747 0.95460 1.22179 0.99767 0.96606 0.97164 1.22605 1.00312 0.93559 0.91929 1.21520 0.98229 0.92606 0.83638 0.91284 1.22664 1.00923 0.95990 0.96983 1.22752 1.01875 0.97055 0.95286 1.22230 0.93038 0.90181 0.96879 1.48352 1.44805 1.37639 1.04660 1.19609 0.82668 0.82508 0.82154 1.90726 1.31898 1.26466 1.84607 1.23251 1.03619 1.03301 0.96374 1.84653 1.59388 1.50430 0.96499 1.22366 1.29312 1.23105 0.91851 0.89688 1.24695 0.95374 0.95966 0.95235 1.69942 1.41351 1.40493 1.00291 0.86748 0.81704 0.83577 0.79887 1.19408 1.20183 1.15821 0.91520 0.91487 0.98753 0.96211 0.91171 0.91973 0.91029 0.91669 0.92200 0.91571 0.92411 0.91929 0.92473 0.92348 0.90982 0.95234 0.90662 0.90430 0.90145 0.90689 0.90656 0.91881 0.89659 0.89506 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.87 7.25 60.06 0.44 1.31 16 2 N -0.50 -6.96 1.87 -242.92 -0.45 -7.41 16 3 C 0.06 0.83 4.06 -3.82 -0.02 0.82 16 4 C -0.08 -1.07 2.99 -89.50 -0.27 -1.34 16 5 C -0.09 -1.45 6.20 -25.07 -0.16 -1.61 16 6 C -0.13 -1.80 6.91 -24.74 -0.17 -1.97 16 7 C -0.12 -1.44 6.83 -25.07 -0.17 -1.61 16 8 C -0.12 -1.33 6.46 -25.61 -0.17 -1.49 16 9 C 0.05 0.52 4.37 -3.83 -0.02 0.51 16 10 C 0.14 1.62 2.89 -66.93 -0.19 1.43 16 11 H 0.07 0.85 6.68 -51.93 -0.35 0.50 16 12 C -0.13 -1.00 6.48 -24.87 -0.16 -1.17 16 13 C -0.13 -1.04 7.08 -24.59 -0.17 -1.21 16 14 C 0.10 1.07 6.69 -2.53 -0.02 1.05 16 15 N -0.62 -8.31 3.06 -162.99 -0.50 -8.81 16 16 C 0.54 9.51 7.43 -10.99 -0.08 9.43 16 17 O -0.47 -9.01 10.01 5.56 0.06 -8.95 16 18 C -0.11 -2.27 5.16 36.01 0.19 -2.08 16 19 S -0.14 -3.40 18.55 -107.50 -1.99 -5.39 16 20 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 21 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 22 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.92 13.97 55.49 0.78 -26.15 16 24 Si 0.86 21.95 27.74 -169.99 -4.71 17.24 16 25 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.23 -5.96 6.74 56.52 0.38 -5.58 16 28 H 0.07 0.99 5.51 -51.93 -0.29 0.71 16 29 H 0.07 1.06 7.97 -51.93 -0.41 0.65 16 30 H -0.01 -0.07 8.14 -51.93 -0.42 -0.50 16 31 H 0.02 0.24 8.00 -51.93 -0.42 -0.18 16 32 H 0.07 0.98 7.77 -51.93 -0.40 0.57 16 33 H 0.06 0.82 6.67 -51.93 -0.35 0.47 16 34 H 0.07 1.28 7.75 -51.93 -0.40 0.88 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 42 H 0.07 0.85 6.49 -51.93 -0.34 0.51 16 43 H 0.03 0.32 8.12 -51.93 -0.42 -0.11 16 44 H 0.07 0.54 7.79 -51.93 -0.40 0.14 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.08 0.83 7.48 -51.93 -0.39 0.44 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.09 1.64 7.85 -51.92 -0.41 1.23 16 51 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 52 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 402.30 15.07 6.06 6.06 Total: -1.00 -31.52 402.30 -11.15 -42.66 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -9.62 Total: 0.66 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -0.75 Total: -9.91 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.18 Total: -42.37 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.06 Total: -8.95 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.52 -11.15 -42.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700350496.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.851 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds