Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46905 * 110.99677 * 2 1 4 4 C 1.53003 * 109.46990 * 160.26165 * 3 2 1 5 5 C 1.54263 * 110.03460 * 291.75261 * 4 3 2 6 6 C 1.54892 * 104.19497 * 217.10338 * 5 4 3 7 7 C 1.54890 * 102.74865 * 37.94232 * 6 5 4 8 8 C 1.53875 * 110.03351 * 174.58306 * 4 3 2 9 9 C 1.46893 * 111.00137 * 236.04402 * 2 1 3 10 10 C 1.53001 * 109.47323 * 293.95148 * 9 2 1 11 11 H 1.09005 * 109.99520 * 64.64045 * 10 9 2 12 12 C 1.54373 * 109.90273 * 185.70326 * 10 9 2 13 13 C 1.55153 * 102.91615 * 141.57837 * 12 10 9 14 14 C 1.54906 * 101.62001 * 324.54752 * 13 12 10 15 15 N 1.47021 * 109.88136 * 303.54636 * 10 9 2 16 16 C 1.34774 * 125.64742 * 61.68022 * 15 10 9 17 17 O 1.21278 * 120.00313 * 359.97438 * 16 15 10 18 18 C 1.50699 * 119.99822 * 179.97438 * 16 15 10 19 19 S 1.81003 * 109.47193 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00103 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00161 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00034 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00310 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00053 * 359.97438 * 22 20 19 25 25 H 1.48510 * 109.47078 * 89.99887 * 24 22 20 26 26 H 1.48493 * 109.47545 * 209.99977 * 24 22 20 27 27 H 1.48499 * 109.47047 * 330.00319 * 24 22 20 28 28 H 1.09005 * 109.46919 * 177.65456 * 1 2 3 29 29 H 1.09005 * 109.47217 * 297.65466 * 1 2 3 30 30 H 1.08995 * 109.47128 * 57.65202 * 1 2 3 31 31 H 1.09000 * 109.46806 * 280.25873 * 3 2 1 32 32 H 1.09000 * 109.47512 * 40.26393 * 3 2 1 33 33 H 1.09005 * 110.01830 * 53.19509 * 4 3 2 34 34 H 1.08999 * 110.48656 * 335.78481 * 5 4 3 35 35 H 1.08999 * 110.48770 * 98.42594 * 5 4 3 36 36 H 1.08992 * 110.75811 * 279.62776 * 6 5 4 37 37 H 1.09003 * 110.75138 * 156.25505 * 6 5 4 38 38 H 1.08995 * 110.48625 * 203.37919 * 7 6 5 39 39 H 1.09006 * 110.48590 * 80.73215 * 7 6 5 40 40 H 1.08996 * 110.03280 * 238.57139 * 8 4 3 41 41 H 1.09002 * 110.02673 * 359.95502 * 8 4 3 42 42 H 1.09007 * 109.46918 * 173.95320 * 9 2 1 43 43 H 1.09000 * 109.46909 * 53.95341 * 9 2 1 44 44 H 1.08998 * 110.70040 * 23.23424 * 12 10 9 45 45 H 1.08996 * 110.75501 * 259.94627 * 12 10 9 46 46 H 1.09008 * 111.00300 * 206.45211 * 13 12 10 47 47 H 1.08997 * 111.00780 * 82.64567 * 13 12 10 48 48 H 1.09002 * 110.37085 * 155.83238 * 14 13 12 49 49 H 1.08998 * 110.36625 * 278.15328 * 14 13 12 50 50 H 1.09000 * 109.47469 * 299.99288 * 18 16 15 51 51 H 1.08998 * 109.47488 * 59.99721 * 18 16 15 52 52 H 0.96995 * 120.00533 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 3.4457 1.3611 0.4872 5 6 3.4981 0.9873 1.9829 6 6 4.6365 1.8682 2.5549 7 6 4.4534 3.2025 1.7901 8 6 4.0531 2.7696 0.3646 9 6 1.9954 -0.7660 -1.1375 10 6 1.6315 -2.2426 -0.9702 11 1 0.5495 -2.3671 -1.0135 12 6 2.3001 -3.0780 -2.0830 13 6 2.7193 -4.3737 -1.3396 14 6 3.1087 -3.8215 0.0544 15 7 2.1410 -2.7405 0.3159 16 6 1.7822 -2.2848 1.5324 17 8 0.9726 -1.3870 1.6291 18 6 2.3869 -2.8909 2.7725 19 16 1.7096 -2.0705 4.2369 20 6 2.5638 -2.9495 5.5027 21 1 3.2607 -3.7319 5.2408 22 6 2.3404 -2.6371 6.8365 23 7 2.9781 -3.2941 7.7822 24 14 1.1345 -1.2844 7.2897 25 1 -0.2219 -1.8657 7.4561 26 1 1.5598 -0.6479 8.5621 27 1 1.1068 -0.2642 6.2109 28 1 -0.3633 -1.0269 -0.0421 29 1 -0.3634 0.4770 0.9103 30 1 -0.3633 0.5498 -0.8681 31 1 1.9546 1.7762 -1.0113 32 1 1.3935 1.9918 0.6642 33 1 4.0304 0.6503 -0.0968 34 1 2.5516 1.2242 2.4687 35 1 3.7361 -0.0695 2.1039 36 1 5.6104 1.4294 2.3384 37 1 4.5083 2.0168 3.6272 38 1 5.3884 3.7623 1.7703 39 1 3.6610 3.7972 2.2448 40 1 4.9329 2.7421 -0.2782 41 1 3.3148 3.4603 -0.0428 42 1 3.0797 -0.6610 -1.1755 43 1 1.5611 -0.3873 -2.0627 44 1 3.1738 -2.5614 -2.4803 45 1 1.5888 -3.3023 -2.8778 46 1 3.5738 -4.8442 -1.8261 47 1 1.8834 -5.0691 -1.2648 48 1 3.0191 -4.6019 0.8101 49 1 4.1239 -3.4254 0.0354 50 1 2.1507 -3.9543 2.8096 51 1 3.4688 -2.7595 2.7507 52 1 2.8217 -3.0761 8.7143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700350496.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = -36.284316 kcal Electronic energy + Delta-G solvation = -29863.682286 eV Core-core repulsion = 26181.899493 eV Total energy + Delta-G solvation = -3681.782794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16051 -39.46045 -38.16424 -37.10556 -34.65522 -32.84108 -31.72866 -30.52364 -30.05482 -29.45039 -27.82650 -27.21825 -25.98519 -24.01174 -22.32308 -21.96386 -21.40871 -20.45530 -20.03297 -19.29002 -18.00402 -17.52025 -17.09150 -16.85365 -16.45525 -16.16176 -15.90120 -15.71195 -15.31715 -15.02629 -14.95413 -14.81910 -14.31234 -14.22810 -14.10095 -13.90082 -13.64112 -13.38355 -13.21489 -13.11273 -12.93914 -12.77306 -12.68580 -12.50789 -12.27710 -12.04651 -11.96285 -11.87901 -11.85140 -11.79359 -11.70184 -11.58644 -11.44876 -11.39697 -11.15773 -11.09013 -10.45075 -10.27411 -9.48538 -8.90610 -8.63617 -8.50209 -6.17088 1.03696 1.29916 1.47334 1.59660 2.00645 2.24941 2.33478 2.76908 2.88279 3.11682 3.63966 3.73706 3.78953 3.84471 3.90056 3.98247 4.09225 4.23625 4.28410 4.33204 4.35334 4.47382 4.48474 4.52065 4.61300 4.63264 4.64843 4.68638 4.78771 4.81931 4.83010 4.87322 4.89707 4.97057 4.97297 5.01327 5.11479 5.14360 5.16640 5.18824 5.28626 5.32635 5.40765 5.48398 5.54177 5.61343 5.67346 5.72175 6.12195 6.40152 6.44465 6.75854 6.95607 7.59652 8.62862 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.004886 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.356016 B = 5729.359862 C = 7591.881246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.523 5.523 3 C 0.069 3.931 4 C -0.075 4.075 5 C -0.088 4.088 6 C -0.132 4.132 7 C -0.118 4.118 8 C -0.112 4.112 9 C 0.048 3.952 10 C 0.140 3.860 11 H 0.060 0.940 12 C -0.115 4.115 13 C -0.120 4.120 14 C 0.089 3.911 15 N -0.611 5.611 16 C 0.545 3.455 17 O -0.490 6.490 18 C -0.101 4.101 19 S -0.154 6.154 20 C -0.529 4.529 21 H 0.054 0.946 22 C 0.047 3.953 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.261 1.261 27 H -0.236 1.236 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.012 0.988 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.089 0.911 51 H 0.087 0.913 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.438 6.161 -25.411 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.247 5.247 3 C -0.059 4.059 4 C -0.093 4.093 5 C -0.126 4.126 6 C -0.169 4.169 7 C -0.155 4.155 8 C -0.150 4.150 9 C -0.080 4.080 10 C 0.036 3.964 11 H 0.078 0.922 12 C -0.154 4.154 13 C -0.158 4.158 14 C -0.033 4.033 15 N -0.348 5.348 16 C 0.330 3.670 17 O -0.362 6.362 18 C -0.252 4.252 19 S 0.073 5.927 20 C -0.677 4.677 21 H 0.072 0.928 22 C -0.158 4.158 23 N -0.559 5.559 24 Si 0.736 3.264 25 H -0.188 1.188 26 H -0.185 1.185 27 H -0.160 1.160 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.108 0.892 45 H 0.117 0.883 46 H 0.124 0.876 47 H 0.094 0.906 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.108 0.892 51 H 0.105 0.895 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.384 7.273 -24.560 25.617 hybrid contribution 0.398 -0.724 0.530 0.981 sum 0.782 6.550 -24.030 24.919 Atomic orbital electron populations 1.21860 0.87295 1.00414 0.97756 1.62156 1.07963 1.12717 1.41879 1.22182 0.95383 0.89689 0.98667 1.21657 0.95210 0.96924 0.95557 1.21990 0.97345 0.97872 0.95411 1.22553 0.98621 0.96615 0.99136 1.22313 1.01436 0.96346 0.95427 1.22148 1.00645 0.95275 0.96950 1.22618 1.00329 0.93296 0.91776 1.21762 0.98094 0.93224 0.83315 0.92244 1.22669 1.01646 0.95057 0.95979 1.22734 1.02904 0.97072 0.93121 1.22498 0.92754 0.89273 0.98813 1.48249 1.44581 1.37767 1.04204 1.19117 0.82661 0.82450 0.82747 1.90734 1.32961 1.27436 1.85108 1.23206 1.03467 1.03065 0.95447 1.84498 1.59384 1.50929 0.97890 1.22537 1.29010 1.22670 0.93489 0.92790 1.25529 0.96993 0.98091 0.95186 1.70022 1.42832 1.42093 1.00933 0.85874 0.79668 0.80869 0.79987 1.18751 1.18517 1.15997 0.92591 0.94232 0.96972 0.94318 0.92810 0.91737 0.94215 0.94773 0.91569 0.93178 0.90495 0.92202 0.90692 0.91151 0.90783 0.93400 0.89224 0.88305 0.87557 0.90636 0.91445 0.91170 0.89242 0.89495 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.10 7.25 127.69 0.93 3.02 16 2 N -0.52 -14.19 1.87 -922.45 -1.73 -15.92 16 3 C 0.07 1.71 4.06 86.30 0.35 2.06 16 4 C -0.07 -1.83 2.99 -10.07 -0.03 -1.86 16 5 C -0.09 -2.84 6.20 31.67 0.20 -2.65 16 6 C -0.13 -3.69 6.91 31.89 0.22 -3.47 16 7 C -0.12 -2.57 6.83 31.67 0.22 -2.36 16 8 C -0.11 -2.22 6.46 31.32 0.20 -2.01 16 9 C 0.05 1.01 4.37 86.30 0.38 1.39 16 10 C 0.14 2.83 2.89 45.36 0.13 2.97 16 11 H 0.06 1.35 6.68 -2.38 -0.02 1.34 16 12 C -0.12 -1.37 6.48 31.80 0.21 -1.16 16 13 C -0.12 -1.48 7.08 31.98 0.23 -1.26 16 14 C 0.09 1.76 6.69 86.86 0.58 2.34 16 15 N -0.61 -15.92 3.06 -787.99 -2.41 -18.34 16 16 C 0.54 19.32 7.43 87.66 0.65 19.97 16 17 O -0.49 -19.39 10.01 -3.02 -0.03 -19.42 16 18 C -0.10 -4.11 5.16 71.24 0.37 -3.74 16 19 S -0.15 -7.92 18.55 -56.49 -1.05 -8.97 16 20 C -0.53 -31.78 10.04 67.95 0.68 -31.10 16 21 H 0.05 3.46 8.03 -2.91 -0.02 3.44 16 22 C 0.05 2.83 5.50 84.86 0.47 3.29 16 23 N -0.92 -57.41 13.97 21.65 0.30 -57.11 16 24 Si 0.91 46.18 27.74 68.60 1.90 48.09 16 25 H -0.26 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 27 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 28 H 0.06 1.67 5.51 -2.38 -0.01 1.65 16 29 H 0.04 1.30 7.97 -2.38 -0.02 1.28 16 30 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.04 0.82 8.00 -2.39 -0.02 0.80 16 32 H 0.05 1.50 7.77 -2.39 -0.02 1.48 16 33 H 0.06 1.57 6.67 -2.38 -0.02 1.55 16 34 H 0.04 1.50 7.75 -2.39 -0.02 1.49 16 35 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.26 7.67 -2.39 -0.02 1.24 16 42 H 0.07 1.53 6.49 -2.38 -0.02 1.51 16 43 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 44 H 0.09 0.87 7.79 -2.39 -0.02 0.85 16 45 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.11 0.84 8.14 -2.38 -0.02 0.83 16 47 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 48 H 0.07 1.43 7.48 -2.39 -0.02 1.42 16 49 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.09 3.54 7.85 -2.39 -0.02 3.52 16 51 H 0.09 3.51 8.14 -2.40 -0.02 3.49 16 52 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -71.35 402.30 3.59 -67.76 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.83 Total: 18.47 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 5.77 Total: -14.57 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -3.84 Total: -91.36 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.03 Total: -19.42 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.90 Total: 48.09 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.05 Total: -8.97 kcal Total: -71.35 3.59 -67.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700350496.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.473 kcal (2) G-P(sol) polarization free energy of solvation -71.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds