Wall clock time and date at job start Sat Apr 11 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34781 * 120.00228 * 2 1 4 4 O 1.21282 * 120.00135 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99876 * 359.97438 * 3 2 1 6 6 S 1.81002 * 109.46991 * 179.97438 * 5 3 2 7 7 C 1.76195 * 99.99858 * 179.97438 * 6 5 3 8 8 H 1.08002 * 120.00394 * 0.02562 * 7 6 5 9 9 C 1.38797 * 120.00107 * 179.97438 * 7 6 5 10 10 N 1.31636 * 120.00221 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00050 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47158 * 89.99419 * 11 9 7 13 13 H 1.48494 * 109.47335 * 209.99661 * 11 9 7 14 14 H 1.48500 * 109.46841 * 330.00077 * 11 9 7 15 15 C 1.46499 * 120.00054 * 179.97438 * 2 1 3 16 16 C 1.52997 * 109.47226 * 239.19397 * 15 2 1 17 17 C 1.53001 * 109.47520 * 59.99854 * 16 15 2 18 18 C 1.53004 * 109.47085 * 59.99803 * 17 16 15 19 19 N 1.46893 * 109.47155 * 180.02562 * 18 17 16 20 20 C 1.46897 * 111.00053 * 205.00346 * 19 18 17 21 21 C 1.53002 * 109.47400 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.47346 * 179.97438 * 21 20 19 23 23 C 1.52994 * 117.50061 * 243.74510 * 22 21 20 24 24 C 1.52991 * 117.50049 * 175.08078 * 22 21 20 25 25 C 1.52997 * 109.47103 * 300.00453 * 18 17 16 26 26 C 1.53001 * 109.47520 * 59.99813 * 25 18 17 27 27 H 1.09004 * 109.47130 * 275.92122 * 1 2 3 28 28 H 1.09000 * 109.46560 * 35.91748 * 1 2 3 29 29 H 1.08991 * 109.47463 * 155.91714 * 1 2 3 30 30 H 1.08999 * 109.47159 * 299.99857 * 5 3 2 31 31 H 1.09000 * 109.46794 * 59.99982 * 5 3 2 32 32 H 0.97002 * 119.99742 * 180.02562 * 10 9 7 33 33 H 1.08996 * 109.47637 * 119.19183 * 15 2 1 34 34 H 1.09003 * 109.46978 * 299.99602 * 16 15 2 35 35 H 1.09004 * 109.47508 * 179.97438 * 16 15 2 36 36 H 1.09004 * 109.46554 * 300.00369 * 17 16 15 37 37 H 1.08994 * 109.47547 * 179.97438 * 17 16 15 38 38 H 1.09004 * 109.46772 * 60.00054 * 18 17 16 39 39 H 1.00896 * 111.00341 * 81.04870 * 19 18 17 40 40 H 1.09003 * 109.47259 * 299.99761 * 20 19 18 41 41 H 1.09003 * 109.47363 * 59.99438 * 20 19 18 42 42 H 1.09000 * 109.46939 * 299.99329 * 21 20 19 43 43 H 1.08994 * 109.47391 * 59.99574 * 21 20 19 44 44 H 1.09005 * 115.54598 * 29.41445 * 22 21 20 45 45 H 1.09000 * 117.49854 * 359.97438 * 23 22 21 46 46 H 1.09001 * 117.50022 * 145.02108 * 23 22 21 47 47 H 1.08998 * 117.50345 * 214.98033 * 24 22 21 48 48 H 1.09010 * 117.50085 * 0.02562 * 24 22 21 49 49 H 1.08995 * 109.47128 * 179.97438 * 25 18 17 50 50 H 1.09004 * 109.47508 * 300.00028 * 25 18 17 51 51 H 1.09004 * 109.47010 * 59.99354 * 26 25 18 52 52 H 1.08994 * 109.47547 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5617 3.8480 0.0003 7 6 1.4417 5.2082 -0.0013 8 1 0.3763 5.0306 -0.0020 9 6 1.9284 6.5080 -0.0006 10 7 1.0916 7.5242 -0.0013 11 14 3.7709 6.8154 0.0014 12 1 4.2607 6.8970 -1.3982 13 1 4.0589 8.0927 0.7018 14 1 4.4579 5.7008 0.7019 15 6 2.1975 -1.2687 0.0006 16 6 3.0922 -1.3405 1.2395 17 6 2.2280 -1.2500 2.4988 18 6 1.2338 -2.4129 2.5197 19 7 0.4036 -2.3257 3.7284 20 6 -0.1172 -3.6464 4.1057 21 6 -0.9754 -3.5154 5.3656 22 6 -1.5184 -4.8909 5.7582 23 6 -3.0349 -5.0892 5.7191 24 6 -2.3098 -4.9916 7.0637 25 6 0.3390 -2.3411 1.2807 26 6 1.2033 -2.4315 0.0214 27 1 -0.3633 0.1060 1.0222 28 1 -0.3632 0.8323 -0.6029 29 1 -0.3634 -0.9381 -0.4193 30 1 0.7591 2.5299 -0.8908 31 1 0.7584 2.5302 0.8892 32 1 1.4319 8.4326 -0.0012 33 1 2.8132 -1.3332 -0.8965 34 1 3.8005 -0.5120 1.2247 35 1 3.6369 -2.2847 1.2402 36 1 1.6830 -0.3060 2.4983 37 1 2.8654 -1.3016 3.3815 38 1 1.7788 -3.3568 2.5200 39 1 -0.3470 -1.6629 3.6046 40 1 -0.7247 -4.0434 3.2924 41 1 0.7149 -4.3228 4.3012 42 1 -0.3683 -3.1183 6.1791 43 1 -1.8075 -2.8391 5.1697 44 1 -0.8924 -5.7396 5.4823 45 1 -3.6459 -4.2397 5.4140 46 1 -3.4068 -6.0686 5.4179 47 1 -2.2050 -5.9067 7.6465 48 1 -2.4441 -4.0778 7.6427 49 1 -0.3689 -3.1697 1.2953 50 1 -0.2060 -1.3971 1.2802 51 1 1.7483 -3.3755 0.0219 52 1 0.5659 -2.3800 -0.8612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700432081.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:10 Heat of formation + Delta-G solvation = -27.645574 kcal Electronic energy + Delta-G solvation = -27815.761991 eV Core-core repulsion = 24134.353802 eV Total energy + Delta-G solvation = -3681.408190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.72145 -39.48872 -38.55345 -36.76721 -34.80398 -34.66880 -32.12374 -31.95722 -30.32685 -28.78312 -27.85754 -26.92476 -24.04613 -23.40214 -23.18238 -22.68605 -21.69903 -21.09196 -20.12486 -19.42160 -17.87537 -17.50520 -17.14257 -17.02638 -16.60721 -16.33573 -16.17639 -15.72398 -15.67685 -15.18745 -14.98197 -14.92613 -14.54364 -14.48996 -14.14120 -13.88809 -13.64566 -13.53634 -13.36160 -13.17825 -13.03561 -12.92851 -12.86417 -12.64791 -12.54875 -12.43465 -12.32649 -12.10314 -11.94402 -11.87084 -11.55285 -11.33253 -11.30351 -11.17417 -11.00634 -10.75732 -10.56317 -10.51921 -9.60934 -9.22378 -8.99771 -8.51919 -6.22337 0.98668 1.30365 1.46095 1.54614 1.59325 2.12440 2.24705 2.69427 2.86190 2.90198 3.15386 3.52810 3.76427 3.87465 3.87579 4.00292 4.04365 4.08514 4.14123 4.17316 4.23906 4.29856 4.34779 4.42075 4.44369 4.50989 4.55614 4.55912 4.62863 4.66340 4.71330 4.77368 4.80477 4.85130 4.93454 5.02532 5.06281 5.12696 5.16634 5.20703 5.22999 5.28030 5.30523 5.35609 5.39201 5.44723 5.70358 5.73360 6.10726 6.19666 6.31826 6.51235 6.93392 7.16699 8.60387 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.002228 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.056978 B =12565.177329 C =13479.479953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.598 5.598 3 C 0.531 3.469 4 O -0.557 6.557 5 C -0.105 4.105 6 S -0.177 6.177 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.045 3.955 10 N -0.916 5.916 11 Si 0.914 3.086 12 H -0.262 1.262 13 H -0.259 1.259 14 H -0.238 1.238 15 C 0.149 3.851 16 C -0.134 4.134 17 C -0.094 4.094 18 C 0.101 3.899 19 N -0.698 5.698 20 C 0.070 3.930 21 C -0.083 4.083 22 C -0.155 4.155 23 C -0.181 4.181 24 C -0.187 4.187 25 C -0.170 4.170 26 C -0.110 4.110 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.277 0.723 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.342 0.658 40 H 0.038 0.962 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.077 0.923 50 H 0.091 0.909 51 H 0.094 0.906 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.533 -30.675 6.683 32.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.332 5.332 3 C 0.319 3.681 4 O -0.435 6.435 5 C -0.256 4.256 6 S 0.050 5.950 7 C -0.675 4.675 8 H 0.080 0.920 9 C -0.160 4.160 10 N -0.554 5.554 11 Si 0.736 3.264 12 H -0.187 1.187 13 H -0.183 1.183 14 H -0.162 1.162 15 C 0.047 3.953 16 C -0.173 4.173 17 C -0.133 4.133 18 C -0.009 4.009 19 N -0.328 5.328 20 C -0.059 4.059 21 C -0.121 4.121 22 C -0.174 4.174 23 C -0.218 4.218 24 C -0.224 4.224 25 C -0.208 4.208 26 C -0.149 4.149 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.161 0.839 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.125 0.875 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.110 0.890 49 H 0.096 0.904 50 H 0.109 0.891 51 H 0.112 0.888 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.281 -30.555 7.136 31.819 hybrid contribution -1.481 0.907 -0.611 1.841 sum -6.762 -29.649 6.525 31.102 Atomic orbital electron populations 1.22444 0.78098 1.05050 1.02547 1.47818 1.07876 1.04513 1.72948 1.19915 0.87282 0.85132 0.75819 1.90647 1.15199 1.87360 1.50321 1.23284 1.01720 0.93951 1.06628 1.84706 1.13856 0.98946 1.97538 1.22443 0.94359 0.92502 1.58169 0.92002 1.25554 1.02700 0.94792 0.92949 1.70017 1.36704 0.99496 1.49173 0.85871 0.80290 0.80034 0.80198 1.18683 1.18298 1.16246 1.21127 0.93702 0.82708 0.97776 1.21886 0.98360 1.02578 0.94459 1.21305 0.97251 0.98183 0.96532 1.21437 0.93725 0.98048 0.87695 1.60505 1.26648 1.09762 1.35910 1.21893 0.97474 0.90349 0.96212 1.21079 0.98743 0.94770 0.97478 1.22285 0.94268 0.98838 1.01982 1.23116 0.94311 1.03426 1.00980 1.23043 1.04866 1.03521 0.90933 1.22869 0.98896 1.04510 0.94565 1.21736 0.97412 0.96829 0.98876 0.91077 0.91375 0.86963 0.87346 0.87612 0.91380 0.91871 0.93105 0.89710 0.94004 0.92997 0.90419 0.83939 0.94356 0.91452 0.91924 0.91960 0.87452 0.88795 0.88242 0.88244 0.88991 0.90424 0.89128 0.88802 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 8.00 127.77 1.02 2.02 16 2 N -0.60 -14.56 2.25 -822.61 -1.85 -16.41 16 3 C 0.53 18.77 7.40 87.66 0.65 19.41 16 4 O -0.56 -23.99 13.91 -3.04 -0.04 -24.03 16 5 C -0.11 -4.07 4.78 71.24 0.34 -3.73 16 6 S -0.18 -9.11 18.55 -56.49 -1.05 -10.16 16 7 C -0.53 -31.00 10.04 67.95 0.68 -30.32 16 8 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 9 C 0.05 2.69 5.50 84.86 0.47 3.16 16 10 N -0.92 -56.07 13.97 21.65 0.30 -55.76 16 11 Si 0.91 45.61 27.74 68.60 1.90 47.51 16 12 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.24 -11.95 6.74 99.48 0.67 -11.28 16 15 C 0.15 3.09 2.95 44.99 0.13 3.22 16 16 C -0.13 -3.12 5.23 30.59 0.16 -2.96 16 17 C -0.09 -2.07 5.37 30.60 0.16 -1.91 16 18 C 0.10 1.52 2.47 44.92 0.11 1.64 16 19 N -0.70 -10.62 6.25 -491.57 -3.07 -13.69 16 20 C 0.07 0.85 5.44 86.30 0.47 1.32 16 21 C -0.08 -1.01 5.76 30.60 0.18 -0.84 16 22 C -0.16 -1.69 5.73 -10.80 -0.06 -1.76 16 23 C -0.18 -1.83 10.18 30.62 0.31 -1.52 16 24 C -0.19 -2.00 10.25 30.62 0.31 -1.69 16 25 C -0.17 -1.92 4.51 30.59 0.14 -1.78 16 26 C -0.11 -1.31 4.91 30.60 0.15 -1.16 16 27 H 0.07 1.07 6.70 -2.38 -0.02 1.06 16 28 H 0.07 1.20 6.69 -2.39 -0.02 1.19 16 29 H 0.11 1.18 4.95 -2.39 -0.01 1.17 16 30 H 0.11 3.89 7.42 -2.40 -0.02 3.87 16 31 H 0.11 3.85 8.11 -2.40 -0.02 3.83 16 32 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.63 6.11 -2.39 -0.01 1.61 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.04 1.09 7.60 -2.39 -0.02 1.07 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.13 7.80 -2.38 -0.02 1.12 16 39 H 0.34 4.96 8.47 -89.70 -0.76 4.20 16 40 H 0.04 0.41 7.44 -2.39 -0.02 0.39 16 41 H 0.07 0.87 8.06 -2.39 -0.02 0.85 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 0.76 7.87 -2.39 -0.02 0.74 16 44 H 0.11 1.08 8.08 -2.38 -0.02 1.06 16 45 H 0.09 0.94 8.03 -2.39 -0.02 0.92 16 46 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 49 H 0.08 0.68 7.45 -2.39 -0.02 0.66 16 50 H 0.09 1.07 3.65 -2.39 -0.01 1.07 16 51 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 52 H 0.09 0.81 6.89 -2.39 -0.02 0.80 16 Total: -1.00 -72.57 404.93 1.52 -71.04 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.11 Total: 18.39 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 5.23 Total: -16.89 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -4.62 Total: -85.86 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.04 Total: -24.03 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Total: -72.57 1.52 -71.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700432081.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.396 kcal (2) G-P(sol) polarization free energy of solvation -72.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds