Wall clock time and date at job start Sat Apr 11 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.99564 * 2 1 4 4 C 1.54320 * 109.88264 * 121.09378 * 2 1 3 5 5 H 1.08999 * 110.72179 * 23.25278 * 4 2 1 6 6 N 1.46904 * 110.72195 * 259.97695 * 4 2 1 7 7 C 1.46904 * 110.99791 * 155.00037 * 6 4 2 8 8 C 1.52996 * 109.46949 * 180.02562 * 7 6 4 9 9 C 1.53006 * 109.47057 * 294.99926 * 8 7 6 10 10 C 1.52996 * 109.47057 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47392 * 59.99753 * 10 9 8 12 12 C 1.52993 * 109.47260 * 300.00370 * 11 10 9 13 13 C 1.52999 * 109.47163 * 174.99993 * 8 7 6 14 14 C 1.55159 * 102.94349 * 141.61270 * 4 2 1 15 15 C 1.55129 * 101.48377 * 324.33664 * 14 4 2 16 16 N 1.47018 * 109.88489 * 238.90479 * 2 1 3 17 17 C 1.34784 * 125.64722 * 61.60555 * 16 2 1 18 18 O 1.21279 * 119.99925 * 359.97438 * 17 16 2 19 19 C 1.50700 * 119.99961 * 180.02562 * 17 16 2 20 20 S 1.80996 * 109.47240 * 179.97438 * 19 17 16 21 21 C 1.76200 * 100.00090 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00086 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00048 * 179.97438 * 21 20 19 24 24 N 1.31626 * 119.99898 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99937 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47255 * 0.02562 * 25 23 21 27 27 H 1.48509 * 109.46667 * 120.00384 * 25 23 21 28 28 H 1.48500 * 109.47120 * 239.99937 * 25 23 21 29 29 H 1.09003 * 109.46637 * 179.63823 * 1 2 3 30 30 H 1.08988 * 109.47203 * 299.64294 * 1 2 3 31 31 H 1.09006 * 109.46808 * 59.64306 * 1 2 3 32 32 H 1.00898 * 110.99618 * 31.04664 * 6 4 2 33 33 H 1.08998 * 109.47151 * 299.99732 * 7 6 4 34 34 H 1.08992 * 109.47130 * 59.99725 * 7 6 4 35 35 H 1.09001 * 109.47159 * 54.99349 * 8 7 6 36 36 H 1.08998 * 109.46755 * 300.00233 * 9 8 7 37 37 H 1.08999 * 109.46980 * 60.00138 * 9 8 7 38 38 H 1.09007 * 109.47342 * 300.00315 * 10 9 8 39 39 H 1.09004 * 109.47260 * 179.97438 * 10 9 8 40 40 H 1.08998 * 109.47145 * 179.97438 * 11 10 9 41 41 H 1.09007 * 109.46419 * 59.99996 * 11 10 9 42 42 H 1.09007 * 109.47100 * 299.99209 * 12 11 10 43 43 H 1.09003 * 109.47679 * 179.97438 * 12 11 10 44 44 H 1.08998 * 109.46851 * 299.99343 * 13 8 7 45 45 H 1.08998 * 109.46973 * 59.99986 * 13 8 7 46 46 H 1.09004 * 111.00410 * 82.57393 * 14 4 2 47 47 H 1.08993 * 111.00686 * 206.38740 * 14 4 2 48 48 H 1.09005 * 110.49746 * 278.45477 * 15 14 4 49 49 H 1.08997 * 110.34301 * 156.05884 * 15 14 4 50 50 H 1.09004 * 109.46932 * 300.00223 * 19 17 16 51 51 H 1.08997 * 109.47392 * 59.99562 * 19 17 16 52 52 H 0.97005 * 120.00078 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 1.3052 -1.4459 1.6182 6 7 2.4565 0.1987 2.2904 7 6 2.3871 -0.4243 3.6190 8 6 2.8110 0.5917 4.6814 9 6 4.2838 0.9548 4.4810 10 6 4.7076 1.9713 5.5431 11 6 4.5166 1.3646 6.9347 12 6 3.0439 1.0016 7.1350 13 6 2.6202 -0.0156 6.0727 14 6 3.2877 -1.5142 0.6924 15 6 2.8101 -1.8824 -0.7368 16 7 2.0301 -0.7140 -1.1839 17 6 1.8075 -0.3619 -2.4657 18 8 1.1429 0.6207 -2.7180 19 6 2.3834 -1.1900 -3.5855 20 16 1.9114 -0.4659 -5.1757 21 6 2.6956 -1.5997 -6.2730 22 1 3.2567 -2.4335 -5.8776 23 6 2.5914 -1.4219 -7.6456 24 7 1.9072 -0.4060 -8.1275 25 14 3.4222 -2.6244 -8.8089 26 1 4.1227 -3.6708 -8.0219 27 1 2.3989 -3.2605 -9.6770 28 1 4.4049 -1.8981 -9.6527 29 1 -0.3633 -1.0277 -0.0065 30 1 -0.3633 0.5082 0.8931 31 1 -0.3633 0.5194 -0.8868 32 1 1.8955 1.0366 2.2541 33 1 1.3654 -0.7494 3.8149 34 1 3.0549 -1.2851 3.6519 35 1 2.1999 1.4896 4.5899 36 1 4.8950 0.0569 4.5725 37 1 4.4197 1.3874 3.4899 38 1 4.0962 2.8691 5.4512 39 1 5.7569 2.2296 5.4006 40 1 4.8189 2.0887 7.6913 41 1 5.1279 0.4668 7.0265 42 1 2.4326 1.8994 7.0431 43 1 2.9079 0.5690 8.1262 44 1 1.5710 -0.2741 6.2155 45 1 3.2315 -0.9134 6.1642 46 1 4.1655 -0.8687 0.6605 47 1 3.4857 -2.4106 1.2800 48 1 2.1802 -2.7717 -0.7115 49 1 3.6657 -2.0410 -1.3932 50 1 3.4701 -1.2079 -3.5022 51 1 1.9973 -2.2072 -3.5209 52 1 1.8340 -0.2819 -9.0868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700813161.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:16 Heat of formation + Delta-G solvation = -63.576859 kcal Electronic energy + Delta-G solvation = -27326.064642 eV Core-core repulsion = 23643.098354 eV Total energy + Delta-G solvation = -3682.966287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.16547 -39.12881 -37.58057 -35.20157 -32.42054 -32.26944 -31.41808 -31.06440 -30.16259 -28.32744 -25.94509 -25.47493 -24.20190 -22.88297 -22.82471 -21.39242 -20.80254 -20.03948 -18.93407 -17.61672 -16.82679 -16.29424 -16.12543 -15.33501 -15.13281 -14.87980 -14.79610 -14.71262 -14.46995 -14.26899 -13.91754 -13.84026 -13.71170 -13.23638 -12.86116 -12.66681 -12.54954 -12.51542 -12.45200 -12.28134 -12.23475 -11.81278 -11.65520 -11.48590 -11.45648 -11.30012 -11.12770 -11.06363 -11.00003 -10.80839 -10.78041 -10.74077 -10.37363 -10.33419 -9.79185 -9.31814 -9.06419 -8.75132 -8.47030 -8.21209 -6.48661 -6.20745 -3.91036 2.88918 3.10411 3.22191 3.26413 3.31718 3.59521 3.83125 4.19583 4.22829 4.31381 4.40298 4.45948 4.49033 4.74406 4.87558 4.91561 4.98191 5.05542 5.10767 5.11982 5.14483 5.16065 5.18938 5.22940 5.30483 5.32138 5.32943 5.42795 5.44003 5.54031 5.55250 5.60074 5.66064 5.69225 5.74140 5.79205 5.80444 5.85088 5.91089 5.95225 5.99081 6.03248 6.12852 6.16004 6.16382 6.23734 6.53903 6.75545 7.02413 7.60918 7.72597 8.36530 8.60542 9.24693 10.86757 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.001797 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.540946 B =15577.250569 C =15857.086323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 H 0.081 0.919 4 C 0.078 3.922 5 H 0.062 0.938 6 N -0.675 5.675 7 C 0.064 3.936 8 C -0.084 4.084 9 C -0.106 4.106 10 C -0.122 4.122 11 C -0.120 4.120 12 C -0.118 4.118 13 C -0.114 4.114 14 C -0.120 4.120 15 C 0.100 3.900 16 N -0.620 5.620 17 C 0.550 3.450 18 O -0.515 6.515 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.343 0.657 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.066 0.934 49 H 0.080 0.920 50 H 0.089 0.911 51 H 0.088 0.912 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -1.156 31.502 31.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 H 0.099 0.901 4 C -0.032 4.032 5 H 0.080 0.920 6 N -0.307 5.307 7 C -0.065 4.065 8 C -0.103 4.103 9 C -0.143 4.143 10 C -0.160 4.160 11 C -0.158 4.158 12 C -0.156 4.156 13 C -0.152 4.152 14 C -0.158 4.158 15 C -0.024 4.024 16 N -0.358 5.358 17 C 0.338 3.662 18 O -0.389 6.389 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.162 0.838 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.095 0.905 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.107 0.893 51 H 0.106 0.894 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.687 0.305 30.790 30.909 hybrid contribution 0.325 -2.046 -0.287 2.091 sum 3.012 -1.741 30.503 30.701 Atomic orbital electron populations 1.22181 0.94910 1.02259 1.02968 1.21548 0.94150 0.96778 0.84283 0.90100 1.22627 0.96098 0.93783 0.90739 0.91988 1.60520 1.59873 1.07646 1.02645 1.22064 0.99188 0.97362 0.87914 1.21160 0.97575 0.98098 0.93463 1.21477 0.94756 0.98856 0.99216 1.21573 1.01040 0.98665 0.94696 1.21545 0.96445 1.00622 0.97179 1.21519 0.96507 0.99157 0.98394 1.21561 1.00985 0.98503 0.94160 1.22861 0.98359 1.00246 0.94370 1.22357 0.95657 0.88860 0.95535 1.48487 1.54065 1.28555 1.04644 1.20002 0.79775 0.85021 0.81364 1.90688 1.38617 1.27001 1.82566 1.23509 1.03676 1.02588 0.99935 1.85387 1.69547 1.37860 0.90623 1.22905 1.38149 1.14094 0.93101 0.90891 1.24990 0.95255 0.95991 0.97353 1.70029 1.38557 1.28158 1.13536 0.86119 0.79022 0.80262 0.80107 1.19615 1.20577 1.20555 0.92613 0.92397 0.90452 0.83821 0.95247 0.90896 0.91347 0.92375 0.90630 0.92202 0.92189 0.92383 0.92141 0.92097 0.92230 0.92228 0.91914 0.89470 0.90484 0.91576 0.90143 0.89321 0.89389 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.10 37.16 0.34 -1.67 16 2 C 0.14 1.67 2.97 -66.96 -0.20 1.48 16 3 H 0.08 1.09 7.90 -51.92 -0.41 0.68 16 4 C 0.08 0.70 2.80 -65.88 -0.18 0.52 16 5 H 0.06 0.54 7.54 -51.93 -0.39 0.14 16 6 N -0.68 -5.26 5.80 -104.79 -0.61 -5.87 16 7 C 0.06 0.42 4.94 -3.82 -0.02 0.40 16 8 C -0.08 -0.51 2.33 -90.62 -0.21 -0.72 16 9 C -0.11 -0.71 5.09 -26.73 -0.14 -0.84 16 10 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 11 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 12 C -0.12 -0.64 5.92 -26.71 -0.16 -0.79 16 13 C -0.11 -0.63 5.21 -26.70 -0.14 -0.77 16 14 C -0.12 -1.07 6.78 -24.46 -0.17 -1.24 16 15 C 0.10 1.11 6.70 -2.41 -0.02 1.09 16 16 N -0.62 -9.13 3.06 -162.88 -0.50 -9.63 16 17 C 0.55 10.77 7.66 -10.98 -0.08 10.69 16 18 O -0.51 -11.94 14.90 5.56 0.08 -11.86 16 19 C -0.15 -3.06 5.16 36.01 0.19 -2.87 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 22 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 25 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.56 8.14 -51.94 -0.42 0.14 16 31 H 0.08 1.20 6.88 -51.93 -0.36 0.84 16 32 H 0.34 2.61 8.32 -39.29 -0.33 2.28 16 33 H 0.03 0.19 8.08 -51.93 -0.42 -0.23 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.60 7.75 -51.93 -0.40 0.20 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.08 0.89 7.48 -51.93 -0.39 0.50 16 50 H 0.09 1.73 7.85 -51.91 -0.41 1.32 16 51 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 52 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 416.26 15.07 6.27 6.27 Total: -1.00 -33.08 416.26 -12.00 -45.08 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -9.84 Total: -1.48 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -0.91 Total: -9.54 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: -0.37 Total: -41.09 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.08 -12.00 -45.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700813161.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.499 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds