Wall clock time and date at job start Sat Apr 11 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81400 * 103.00128 * 2 1 4 4 H 1.09004 * 109.46804 * 304.99913 * 3 2 1 5 5 C 1.52997 * 109.46921 * 64.99837 * 3 2 1 6 6 C 1.52999 * 109.47220 * 185.00002 * 3 2 1 7 7 C 1.50697 * 109.46813 * 64.99697 * 6 3 2 8 8 O 1.21277 * 120.00285 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99999 * 179.72464 * 7 6 3 10 10 C 1.47578 * 125.62518 * 359.97293 * 9 7 6 11 11 C 1.54364 * 104.65817 * 156.56917 * 10 9 7 12 12 C 1.54387 * 102.36715 * 36.41976 * 11 10 9 13 13 C 1.47080 * 125.63166 * 180.28042 * 9 7 6 14 14 H 1.09002 * 109.87804 * 300.41052 * 13 9 7 15 15 C 1.52995 * 109.88176 * 61.56178 * 13 9 7 16 16 C 1.52111 * 110.58874 * 154.16245 * 11 10 9 17 17 C 1.53340 * 109.44684 * 183.27459 * 16 11 10 18 18 N 1.46935 * 108.68661 * 306.70468 * 17 16 11 19 19 C 1.36941 * 120.54982 * 234.36963 * 18 17 16 20 20 H 1.08000 * 119.99773 * 27.95370 * 19 18 17 21 21 C 1.38810 * 119.99588 * 207.95746 * 19 18 17 22 22 N 1.31617 * 120.00217 * 17.46861 * 21 19 18 23 23 Si 1.86806 * 119.99491 * 197.46642 * 21 19 18 24 24 H 1.48495 * 109.47032 * 90.00103 * 23 21 19 25 25 H 1.48509 * 109.46819 * 210.00020 * 23 21 19 26 26 H 1.48497 * 109.47373 * 329.99511 * 23 21 19 27 27 C 1.46932 * 118.89720 * 54.34452 * 18 17 16 28 28 C 1.52108 * 110.91021 * 278.52637 * 11 10 9 29 29 H 1.08993 * 109.47387 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47449 * 300.00116 * 1 2 3 31 31 H 1.09000 * 109.47344 * 59.99656 * 1 2 3 32 32 H 1.09000 * 109.47293 * 299.99730 * 5 3 2 33 33 H 1.09004 * 109.47319 * 60.00392 * 5 3 2 34 34 H 1.09009 * 109.47186 * 180.02562 * 5 3 2 35 35 H 1.08996 * 109.46851 * 305.00171 * 6 3 2 36 36 H 1.08993 * 109.47143 * 185.00168 * 6 3 2 37 37 H 1.08999 * 110.37911 * 275.50428 * 10 9 7 38 38 H 1.09006 * 110.37627 * 37.84948 * 10 9 7 39 39 H 1.09000 * 110.73012 * 206.81264 * 12 11 10 40 40 H 1.08991 * 110.73687 * 83.50263 * 12 11 10 41 41 H 1.08999 * 109.46842 * 58.54940 * 15 13 9 42 42 H 1.08997 * 109.47152 * 178.54290 * 15 13 9 43 43 H 1.08998 * 109.47023 * 298.55460 * 15 13 9 44 44 H 1.08999 * 109.47188 * 303.26914 * 16 11 10 45 45 H 1.09008 * 109.47319 * 63.27825 * 16 11 10 46 46 H 1.08997 * 109.60359 * 186.94311 * 17 16 11 47 47 H 1.08997 * 109.73635 * 66.53874 * 17 16 11 48 48 H 0.97006 * 119.99782 * 180.02562 * 22 21 19 49 49 H 1.08998 * 109.60251 * 185.89127 * 27 18 17 50 50 H 1.08998 * 109.73372 * 65.48473 * 27 18 17 51 51 H 1.08995 * 109.48218 * 296.89478 * 28 11 10 52 52 H 1.08998 * 109.47546 * 56.91320 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8419 5 6 1.7428 2.4015 1.3073 6 6 3.7370 1.9412 -0.1257 7 6 4.1919 1.4269 -1.4672 8 8 3.3840 0.9672 -2.2462 9 7 5.4958 1.4833 -1.8037 10 6 6.5792 2.0215 -0.9585 11 6 7.8600 1.3378 -1.4828 12 6 7.5970 1.2638 -3.0023 13 6 6.0728 1.0245 -3.0764 14 1 5.8707 -0.0378 -3.2135 15 6 5.4765 1.8243 -4.2364 16 6 9.0815 2.1972 -1.1946 17 6 10.3259 1.5342 -1.7971 18 7 10.4036 0.1497 -1.3111 19 6 11.5361 -0.3081 -0.6920 20 1 12.1746 0.3794 -0.1572 21 6 11.8633 -1.6558 -0.7521 22 7 11.3073 -2.4281 -1.6613 23 14 13.0929 -2.3731 0.4575 24 1 12.3756 -2.8560 1.6647 25 1 13.8096 -3.5073 -0.1793 26 1 14.0711 -1.3264 0.8484 27 6 9.2459 -0.7351 -1.4997 28 6 8.0077 -0.0589 -0.8988 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8899 32 1 0.6636 2.2779 1.3969 33 1 2.2354 1.9149 2.1492 34 1 1.9876 3.4638 1.3072 35 1 4.2339 1.3804 0.6659 36 1 3.9902 2.9975 -0.0366 37 1 6.6488 3.1032 -1.0738 38 1 6.4107 1.7605 0.0863 39 1 8.1405 0.4306 -3.4478 40 1 7.8641 2.2031 -3.4864 41 1 5.6778 2.8852 -4.0876 42 1 5.9274 1.4969 -5.1732 43 1 4.3995 1.6607 -4.2747 44 1 8.9445 3.1836 -1.6379 45 1 9.2090 2.2977 -0.1167 46 1 11.2171 2.0806 -1.4885 47 1 10.2540 1.5363 -2.8847 48 1 11.5357 -3.3700 -1.7030 49 1 9.4251 -1.6845 -0.9952 50 1 9.0864 -0.9108 -2.5636 51 1 8.1202 0.0095 0.1832 52 1 7.1213 -0.6474 -1.1355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707126572.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:31 Heat of formation + Delta-G solvation = -38.642769 kcal Electronic energy + Delta-G solvation = -29160.615986 eV Core-core repulsion = 25478.730922 eV Total energy + Delta-G solvation = -3681.885064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.69206 -39.82401 -37.51520 -35.53842 -34.75567 -32.87304 -32.53633 -31.59795 -30.04510 -28.85885 -28.31818 -27.12367 -25.73611 -24.09986 -23.60579 -22.59232 -22.12781 -19.94512 -19.59086 -18.41760 -17.95155 -17.62770 -16.99025 -16.85014 -16.52210 -15.74707 -15.63290 -15.31343 -15.14120 -15.01561 -14.77427 -14.59929 -14.53353 -14.29115 -14.10063 -13.99184 -13.58334 -13.42945 -13.25765 -13.14715 -13.11606 -12.96936 -12.91750 -12.69201 -12.56616 -12.34623 -12.23744 -12.18624 -12.13535 -11.99360 -11.78523 -11.70606 -11.38589 -11.07897 -11.00870 -10.73990 -10.61389 -10.48490 -9.55841 -8.62312 -8.47688 -7.84300 -5.28810 0.81762 1.46966 1.48778 1.56929 1.71690 1.75421 2.05185 2.53072 3.28914 3.41918 3.56251 3.64929 3.73814 3.82110 3.89666 4.17231 4.20587 4.23719 4.28057 4.31508 4.32457 4.34539 4.49399 4.53186 4.55406 4.59668 4.66413 4.72287 4.76408 4.79023 4.83172 4.86150 4.88337 4.95360 4.97926 5.00136 5.07289 5.13739 5.26204 5.27224 5.30656 5.34793 5.42981 5.46460 5.49899 5.59124 5.69012 5.82550 6.42400 6.65166 7.18443 7.27395 7.91964 8.42295 9.21217 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015408 B = 0.002828 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.746648 B = 9899.427176 C =10595.756112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.321 6.321 3 C -0.027 4.027 4 H 0.083 0.917 5 C -0.141 4.141 6 C -0.116 4.116 7 C 0.517 3.483 8 O -0.560 6.560 9 N -0.612 5.612 10 C 0.113 3.887 11 C -0.055 4.055 12 C -0.110 4.110 13 C 0.138 3.862 14 H 0.042 0.958 15 C -0.147 4.147 16 C -0.103 4.103 17 C 0.140 3.860 18 N -0.608 5.608 19 C -0.256 4.256 20 H 0.069 0.931 21 C -0.054 4.054 22 N -0.936 5.936 23 Si 0.962 3.038 24 H -0.288 1.288 25 H -0.299 1.299 26 H -0.266 1.266 27 C 0.183 3.817 28 C -0.108 4.108 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.138 0.862 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.016 0.984 48 H 0.247 0.753 49 H 0.044 0.956 50 H -0.004 1.004 51 H 0.053 0.947 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.124 15.448 4.310 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.095 6.095 3 C -0.156 4.156 4 H 0.101 0.899 5 C -0.200 4.200 6 C -0.156 4.156 7 C 0.306 3.694 8 O -0.438 6.438 9 N -0.346 5.346 10 C -0.009 4.009 11 C -0.056 4.056 12 C -0.148 4.148 13 C 0.035 3.965 14 H 0.060 0.940 15 C -0.205 4.205 16 C -0.142 4.142 17 C 0.015 3.985 18 N -0.332 5.332 19 C -0.387 4.387 20 H 0.086 0.914 21 C -0.249 4.249 22 N -0.583 5.583 23 Si 0.791 3.209 24 H -0.215 1.215 25 H -0.226 1.226 26 H -0.191 1.191 27 C 0.057 3.943 28 C -0.147 4.147 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.156 0.844 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.034 0.966 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.014 0.986 51 H 0.071 0.929 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.926 14.180 3.880 23.965 hybrid contribution 0.094 -0.530 0.083 0.545 sum -18.832 13.650 3.962 23.593 Atomic orbital electron populations 1.23352 0.91799 1.06861 1.05456 1.87380 1.10316 1.13931 1.97889 1.22875 0.97651 0.92565 1.02527 0.89866 1.22072 1.01804 1.01769 0.94325 1.21595 0.94417 1.05276 0.94300 1.20732 0.80441 0.78496 0.89720 1.90710 1.52831 1.46809 1.53490 1.48702 1.06587 1.61671 1.17682 1.22537 0.84367 0.98951 0.95008 1.20946 0.94805 0.94985 0.94815 1.22684 0.92640 1.03010 0.96469 1.21458 0.93245 0.97199 0.84623 0.94005 1.21996 1.00789 1.00357 0.97403 1.21699 0.93139 0.97973 1.01413 1.21106 0.96926 0.84976 0.95494 1.44298 1.12185 1.08772 1.67911 1.19538 1.01807 0.92759 1.24576 0.91373 1.25766 1.01045 0.98559 0.99509 1.70195 1.48107 1.05454 1.34512 0.85333 0.78974 0.77838 0.78739 1.21481 1.22565 1.19057 1.20513 0.85026 0.93333 0.95419 1.21728 0.97383 0.95975 0.99633 0.87936 0.88878 0.90541 0.91664 0.91136 0.89408 0.87723 0.84396 0.88257 0.89645 0.92127 0.88711 0.91243 0.91152 0.93340 0.88918 0.91778 0.92840 0.96587 0.94393 0.93780 0.98573 0.92871 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.45 113.37 1.19 -0.54 16 2 S -0.32 -7.78 20.24 -56.49 -1.14 -8.93 16 3 C -0.03 -0.49 2.44 30.59 0.07 -0.41 16 4 H 0.08 1.64 7.95 -2.39 -0.02 1.62 16 5 C -0.14 -1.57 9.10 71.98 0.66 -0.92 16 6 C -0.12 -2.04 4.18 29.85 0.12 -1.92 16 7 C 0.52 13.55 7.35 87.66 0.64 14.20 16 8 O -0.56 -18.81 13.82 -3.02 -0.04 -18.85 16 9 N -0.61 -15.45 3.05 -788.35 -2.41 -17.86 16 10 C 0.11 2.37 5.60 86.64 0.49 2.86 16 11 C -0.05 -1.53 0.55 -51.84 -0.03 -1.56 16 12 C -0.11 -3.07 4.45 31.56 0.14 -2.93 16 13 C 0.14 3.87 3.08 45.38 0.14 4.01 16 14 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 15 C -0.15 -3.61 9.10 71.98 0.66 -2.95 16 16 C -0.10 -2.82 4.84 30.41 0.15 -2.68 16 17 C 0.14 5.28 6.24 86.41 0.54 5.82 16 18 N -0.61 -29.42 2.98 -698.48 -2.08 -31.50 16 19 C -0.26 -13.84 9.57 84.03 0.80 -13.04 16 20 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 21 C -0.05 -3.00 4.90 84.86 0.42 -2.59 16 22 N -0.94 -56.04 11.20 21.65 0.24 -55.80 16 23 Si 0.96 45.01 29.59 68.60 2.03 47.04 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 C 0.18 8.74 5.02 86.41 0.43 9.17 16 28 C -0.11 -3.96 4.87 30.42 0.15 -3.82 16 29 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.10 7.14 -2.39 -0.02 1.09 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 0.66 6.92 -2.39 -0.02 0.64 16 33 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.10 1.83 7.87 -2.39 -0.02 1.81 16 36 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.10 1.52 8.00 -2.39 -0.02 1.50 16 38 H 0.09 1.62 7.41 -2.38 -0.02 1.61 16 39 H 0.06 2.08 6.18 -2.39 -0.01 2.07 16 40 H 0.09 2.22 7.68 -2.39 -0.02 2.20 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.05 1.37 6.88 -2.39 -0.02 1.35 16 44 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 45 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 46 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 47 H 0.02 0.62 7.63 -2.39 -0.02 0.60 16 48 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 49 H 0.04 2.46 6.01 -2.39 -0.01 2.45 16 50 H 0.00 -0.19 6.55 -2.39 -0.02 -0.21 16 51 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 52 H 0.04 1.63 7.82 -2.39 -0.02 1.61 16 Total: -1.00 -71.27 401.65 4.03 -67.24 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.87 Total: 15.95 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 6.57 Total: 2.71 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -4.25 Total: -105.16 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.04 Total: -18.85 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: -7.78 SS G_CDS: -1.14 Total: -8.93 kcal Total: -71.27 4.03 -67.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707126572.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.596 kcal (2) G-P(sol) polarization free energy of solvation -71.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds