Wall clock time and date at job start Sat Apr 11 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81402 * 103.00233 * 2 1 4 4 H 1.09001 * 109.47215 * 304.99989 * 3 2 1 5 5 C 1.53004 * 109.46926 * 64.99975 * 3 2 1 6 6 C 1.53002 * 109.46934 * 184.99966 * 3 2 1 7 7 C 1.50697 * 109.47100 * 65.00356 * 6 3 2 8 8 O 1.21276 * 120.00298 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00085 * 180.02562 * 7 6 3 10 10 C 1.47579 * 125.62466 * 359.97438 * 9 7 6 11 11 C 1.54123 * 104.78678 * 203.32518 * 10 9 7 12 12 C 1.54397 * 102.46940 * 323.92649 * 11 10 9 13 13 C 1.47077 * 125.63142 * 180.02562 * 9 7 6 14 14 H 1.08996 * 109.88095 * 59.57750 * 13 9 7 15 15 C 1.53004 * 110.00103 * 298.49863 * 13 9 7 16 16 C 1.52094 * 110.69556 * 206.07966 * 11 10 9 17 17 C 1.53337 * 109.49148 * 295.38381 * 16 11 10 18 18 N 1.46932 * 108.69512 * 306.72628 * 17 16 11 19 19 C 1.36941 * 120.57375 * 234.42926 * 18 17 16 20 20 H 1.08003 * 119.99600 * 151.62306 * 19 18 17 21 21 C 1.38812 * 120.00148 * 331.61997 * 19 18 17 22 22 N 1.31615 * 119.99766 * 342.93892 * 21 19 18 23 23 Si 1.86798 * 119.99961 * 162.93875 * 21 19 18 24 24 H 1.48508 * 109.47009 * 59.99877 * 23 21 19 25 25 H 1.48502 * 109.47229 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47166 * 300.00306 * 23 21 19 27 27 C 1.46932 * 118.84657 * 54.40628 * 18 17 16 28 28 C 1.52092 * 110.68270 * 81.76249 * 11 10 9 29 29 H 1.09009 * 109.46733 * 59.99665 * 1 2 3 30 30 H 1.08999 * 109.47486 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47352 * 300.00213 * 1 2 3 32 32 H 1.09000 * 109.47116 * 179.97438 * 5 3 2 33 33 H 1.08993 * 109.46979 * 300.00171 * 5 3 2 34 34 H 1.09001 * 109.47162 * 59.99981 * 5 3 2 35 35 H 1.09001 * 109.47215 * 305.00295 * 6 3 2 36 36 H 1.09000 * 109.46595 * 185.00486 * 6 3 2 37 37 H 1.09001 * 110.37249 * 84.50236 * 10 9 7 38 38 H 1.08996 * 110.37681 * 322.15274 * 10 9 7 39 39 H 1.09005 * 110.73493 * 152.99021 * 12 11 10 40 40 H 1.08999 * 110.72925 * 276.28955 * 12 11 10 41 41 H 1.08997 * 109.47203 * 302.09574 * 15 13 9 42 42 H 1.09003 * 109.47071 * 62.09219 * 15 13 9 43 43 H 1.08998 * 109.47181 * 182.08842 * 15 13 9 44 44 H 1.09000 * 109.46935 * 175.38509 * 16 11 10 45 45 H 1.08994 * 109.46920 * 55.39258 * 16 11 10 46 46 H 1.09001 * 109.59903 * 66.48569 * 17 16 11 47 47 H 1.08993 * 109.59944 * 186.80196 * 17 16 11 48 48 H 0.97003 * 119.99742 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.60240 * 65.34482 * 27 18 17 50 50 H 1.09004 * 109.60756 * 185.65699 * 27 18 17 51 51 H 1.08992 * 109.47473 * 304.60546 * 28 11 10 52 52 H 1.09005 * 109.46541 * 184.61077 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 3.7370 1.9411 -0.1257 7 6 4.1919 1.4269 -1.4672 8 8 3.3842 0.9665 -2.2459 9 7 5.4967 1.4778 -1.8013 10 6 6.5811 2.0094 -0.9532 11 6 7.6987 2.3974 -1.9409 12 6 7.5925 1.2933 -3.0150 13 6 6.0746 1.0136 -3.0716 14 1 5.6277 1.5584 -3.9032 15 6 5.8286 -0.4870 -3.2411 16 6 9.0581 2.3497 -1.2603 17 6 9.1150 3.4121 -0.1562 18 7 8.7480 4.7122 -0.7342 19 6 9.5799 5.7921 -0.6040 20 1 9.5775 6.5691 -1.3542 21 6 10.4263 5.8882 0.4920 22 7 10.2088 5.1478 1.5582 23 14 11.8738 7.0682 0.4537 24 1 11.3774 8.4545 0.2611 25 1 12.6171 6.9817 1.7364 26 1 12.7781 6.7061 -0.6672 27 6 7.4732 4.8332 -1.4548 28 6 7.4254 3.7631 -2.5519 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.9884 3.4635 1.3076 33 1 0.6636 2.2778 1.3969 34 1 2.2354 1.9149 2.1492 35 1 4.2339 1.3802 0.6659 36 1 3.9902 2.9975 -0.0365 37 1 6.9337 1.2427 -0.2632 38 1 6.2383 2.8865 -0.4043 39 1 7.9539 1.6553 -3.9776 40 1 8.1386 0.4017 -2.7071 41 1 6.2623 -1.0239 -2.3975 42 1 4.7560 -0.6773 -3.2801 43 1 6.2921 -0.8289 -4.1665 44 1 9.8391 2.5468 -1.9946 45 1 9.2110 1.3630 -0.8233 46 1 8.4133 3.1534 0.6367 47 1 10.1247 3.4623 0.2512 48 1 10.8004 5.2147 2.3240 49 1 6.6456 4.6832 -0.7614 50 1 7.3993 5.8239 -1.9034 51 1 6.4393 3.7627 -3.0162 52 1 8.1818 3.9818 -3.3058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707126573.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:37 Heat of formation + Delta-G solvation = -23.589071 kcal Electronic energy + Delta-G solvation = -29366.154951 eV Core-core repulsion = 25684.922664 eV Total energy + Delta-G solvation = -3681.232287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.54169 -38.54606 -36.07473 -34.61867 -33.09039 -31.88406 -30.90832 -29.91388 -29.27953 -27.80572 -27.16965 -25.67892 -24.27275 -22.94885 -22.28361 -21.40423 -20.54148 -19.00285 -18.09138 -16.97709 -16.72054 -16.56968 -16.04835 -15.08475 -14.97425 -14.81349 -14.23177 -14.19427 -13.83368 -13.81551 -13.69625 -13.44377 -13.31530 -12.95889 -12.87963 -12.82732 -12.54439 -12.42293 -12.16223 -12.13764 -11.79278 -11.64581 -11.51702 -11.47810 -11.34942 -11.21666 -10.97258 -10.83900 -10.73809 -10.45811 -10.26089 -10.21279 -9.89086 -9.85423 -9.59608 -9.53824 -9.36065 -8.48605 -8.43378 -7.52506 -6.68909 -5.82276 -3.24736 1.63235 2.51913 2.82941 3.10723 3.36018 3.42142 3.43397 4.42702 4.46933 4.50174 4.73298 4.78707 4.96353 4.99649 5.01837 5.07654 5.12931 5.29634 5.32957 5.34866 5.36855 5.40381 5.46277 5.50454 5.55984 5.59248 5.66757 5.72998 5.77840 5.85347 5.91393 5.93324 5.97208 6.05975 6.08625 6.18757 6.28303 6.33221 6.49018 6.55985 6.58927 6.65575 6.70193 6.81351 6.91841 7.31301 7.60733 7.72782 7.76827 8.35772 8.42334 9.18477 9.81644 10.38104 11.25913 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015570 B = 0.003023 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.846981 B = 9260.908470 C =10437.274580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.240 6.240 3 C -0.041 4.041 4 H 0.092 0.908 5 C -0.149 4.149 6 C -0.122 4.122 7 C 0.526 3.474 8 O -0.527 6.527 9 N -0.612 5.612 10 C 0.108 3.892 11 C -0.054 4.054 12 C -0.123 4.123 13 C 0.139 3.861 14 H 0.070 0.930 15 C -0.160 4.160 16 C -0.127 4.127 17 C 0.171 3.829 18 N -0.590 5.590 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.146 3.854 28 C -0.117 4.117 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.018 0.982 47 H 0.088 0.912 48 H 0.254 0.746 49 H 0.016 0.984 50 H 0.053 0.947 51 H 0.050 0.950 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.701 -9.588 -3.923 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.014 6.014 3 C -0.170 4.170 4 H 0.111 0.889 5 C -0.208 4.208 6 C -0.163 4.163 7 C 0.314 3.686 8 O -0.404 6.404 9 N -0.346 5.346 10 C -0.015 4.015 11 C -0.055 4.055 12 C -0.161 4.161 13 C 0.036 3.964 14 H 0.088 0.912 15 C -0.218 4.218 16 C -0.166 4.166 17 C 0.045 3.955 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.081 0.919 21 C -0.195 4.195 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.020 3.980 28 C -0.157 4.157 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.036 0.964 47 H 0.106 0.894 48 H 0.064 0.936 49 H 0.033 0.967 50 H 0.071 0.929 51 H 0.068 0.932 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.464 -10.701 -4.155 17.693 hybrid contribution 0.021 1.636 0.088 1.639 sum -13.443 -9.065 -4.067 16.716 Atomic orbital electron populations 1.23362 0.95351 1.06034 1.04521 1.86921 1.06138 1.10609 1.97733 1.22870 0.97911 0.94795 1.01403 0.88933 1.22114 1.01290 1.01244 0.96133 1.21526 0.94174 1.04031 0.96567 1.20052 0.80724 0.78972 0.88832 1.90707 1.51999 1.45590 1.52072 1.48663 1.06263 1.61595 1.18096 1.22472 0.86942 0.98550 0.93500 1.20953 0.95518 0.94818 0.94194 1.22829 0.93769 0.99296 1.00187 1.21499 0.93578 0.94854 0.86471 0.91199 1.22119 1.03097 0.95226 1.01358 1.22054 0.94214 1.00007 1.00353 1.20807 1.01606 0.82408 0.90684 1.44020 1.17000 1.06766 1.63493 1.19132 1.15441 1.00697 1.03011 0.91859 1.25021 1.00931 0.98907 0.94623 1.70008 1.37896 1.43001 1.03754 0.86396 0.82883 0.80860 0.76772 1.20926 1.21647 1.21057 1.20935 0.88930 0.95940 0.92211 1.21825 0.99991 0.94624 0.99232 0.90692 0.88493 0.90875 0.91324 0.92355 0.91118 0.88151 0.87390 0.91578 0.89873 0.90390 0.90717 0.92740 0.91299 0.92153 0.92132 0.93034 0.96405 0.89418 0.93585 0.96674 0.92855 0.93165 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.45 101.05 1.06 -0.04 16 2 S -0.24 -2.95 20.24 -107.50 -2.18 -5.13 16 3 C -0.04 -0.45 2.44 -26.73 -0.07 -0.52 16 4 H 0.09 1.10 7.96 -51.92 -0.41 0.69 16 5 C -0.15 -1.30 9.10 37.16 0.34 -0.96 16 6 C -0.12 -1.45 4.19 -27.88 -0.12 -1.56 16 7 C 0.53 7.63 7.36 -10.99 -0.08 7.55 16 8 O -0.53 -8.89 13.84 5.56 0.08 -8.82 16 9 N -0.61 -8.59 3.06 -163.27 -0.50 -9.09 16 10 C 0.11 1.55 4.68 -2.86 -0.01 1.53 16 11 C -0.05 -0.81 0.54 -154.11 -0.08 -0.89 16 12 C -0.12 -1.57 5.42 -25.24 -0.14 -1.70 16 13 C 0.14 1.85 3.09 -66.85 -0.21 1.64 16 14 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 15 C -0.16 -2.00 9.10 37.16 0.34 -1.66 16 16 C -0.13 -2.17 4.83 -27.02 -0.13 -2.30 16 17 C 0.17 3.73 5.06 -3.63 -0.02 3.71 16 18 N -0.59 -13.81 2.98 -172.13 -0.51 -14.33 16 19 C -0.25 -6.66 9.57 -15.06 -0.14 -6.81 16 20 H 0.06 1.65 7.89 -52.48 -0.41 1.24 16 21 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 22 N -0.90 -25.13 11.20 55.49 0.62 -24.51 16 23 Si 0.90 21.10 29.59 -169.99 -5.03 16.07 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.15 2.86 6.21 -3.63 -0.02 2.83 16 28 C -0.12 -1.91 4.82 -27.02 -0.13 -2.04 16 29 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16 31 H 0.07 0.54 7.14 -51.93 -0.37 0.17 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.45 6.92 -51.93 -0.36 0.09 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.11 1.17 7.86 -51.93 -0.41 0.77 16 37 H 0.07 0.94 7.97 -51.93 -0.41 0.52 16 38 H 0.08 1.27 5.58 -51.93 -0.29 0.98 16 39 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 40 H 0.07 0.90 7.70 -51.93 -0.40 0.50 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.99 6.90 -51.93 -0.36 0.63 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 46 H 0.02 0.40 7.65 -51.93 -0.40 0.01 16 47 H 0.09 2.21 6.04 -51.93 -0.31 1.89 16 48 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.02 0.30 6.59 -51.92 -0.34 -0.04 16 50 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 51 H 0.05 0.76 7.83 -51.93 -0.41 0.36 16 52 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 401.77 15.07 6.05 6.05 Total: -1.00 -29.51 401.77 -10.46 -39.98 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -9.50 Total: 0.97 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 0.50 Total: -1.20 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.39 Total: -47.92 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.18 Total: -5.13 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.51 -10.46 -39.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707126573.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.387 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds