Wall clock time and date at job start Sat Apr 11 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81402 * 103.00233 * 2 1 4 4 H 1.09001 * 109.47215 * 304.99989 * 3 2 1 5 5 C 1.53004 * 109.46926 * 64.99975 * 3 2 1 6 6 C 1.53002 * 109.46934 * 184.99966 * 3 2 1 7 7 C 1.50697 * 109.47100 * 65.00356 * 6 3 2 8 8 O 1.21276 * 120.00298 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00085 * 180.02562 * 7 6 3 10 10 C 1.47579 * 125.62466 * 359.97438 * 9 7 6 11 11 C 1.54123 * 104.78678 * 203.32518 * 10 9 7 12 12 C 1.54397 * 102.46940 * 323.92649 * 11 10 9 13 13 C 1.47077 * 125.63142 * 180.02562 * 9 7 6 14 14 H 1.08996 * 109.88095 * 59.57750 * 13 9 7 15 15 C 1.53004 * 110.00103 * 298.49863 * 13 9 7 16 16 C 1.52094 * 110.69556 * 206.07966 * 11 10 9 17 17 C 1.53337 * 109.49148 * 295.38381 * 16 11 10 18 18 N 1.46932 * 108.69512 * 306.72628 * 17 16 11 19 19 C 1.36941 * 120.57375 * 234.42926 * 18 17 16 20 20 H 1.08003 * 119.99600 * 151.62306 * 19 18 17 21 21 C 1.38812 * 120.00148 * 331.61997 * 19 18 17 22 22 N 1.31615 * 119.99766 * 342.93892 * 21 19 18 23 23 Si 1.86798 * 119.99961 * 162.93875 * 21 19 18 24 24 H 1.48508 * 109.47009 * 59.99877 * 23 21 19 25 25 H 1.48502 * 109.47229 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47166 * 300.00306 * 23 21 19 27 27 C 1.46932 * 118.84657 * 54.40628 * 18 17 16 28 28 C 1.52092 * 110.68270 * 81.76249 * 11 10 9 29 29 H 1.09009 * 109.46733 * 59.99665 * 1 2 3 30 30 H 1.08999 * 109.47486 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47352 * 300.00213 * 1 2 3 32 32 H 1.09000 * 109.47116 * 179.97438 * 5 3 2 33 33 H 1.08993 * 109.46979 * 300.00171 * 5 3 2 34 34 H 1.09001 * 109.47162 * 59.99981 * 5 3 2 35 35 H 1.09001 * 109.47215 * 305.00295 * 6 3 2 36 36 H 1.09000 * 109.46595 * 185.00486 * 6 3 2 37 37 H 1.09001 * 110.37249 * 84.50236 * 10 9 7 38 38 H 1.08996 * 110.37681 * 322.15274 * 10 9 7 39 39 H 1.09005 * 110.73493 * 152.99021 * 12 11 10 40 40 H 1.08999 * 110.72925 * 276.28955 * 12 11 10 41 41 H 1.08997 * 109.47203 * 302.09574 * 15 13 9 42 42 H 1.09003 * 109.47071 * 62.09219 * 15 13 9 43 43 H 1.08998 * 109.47181 * 182.08842 * 15 13 9 44 44 H 1.09000 * 109.46935 * 175.38509 * 16 11 10 45 45 H 1.08994 * 109.46920 * 55.39258 * 16 11 10 46 46 H 1.09001 * 109.59903 * 66.48569 * 17 16 11 47 47 H 1.08993 * 109.59944 * 186.80196 * 17 16 11 48 48 H 0.97003 * 119.99742 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.60240 * 65.34482 * 27 18 17 50 50 H 1.09004 * 109.60756 * 185.65699 * 27 18 17 51 51 H 1.08992 * 109.47473 * 304.60546 * 28 11 10 52 52 H 1.09005 * 109.46541 * 184.61077 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 3.7370 1.9411 -0.1257 7 6 4.1919 1.4269 -1.4672 8 8 3.3842 0.9665 -2.2459 9 7 5.4967 1.4778 -1.8013 10 6 6.5811 2.0094 -0.9532 11 6 7.6987 2.3974 -1.9409 12 6 7.5925 1.2933 -3.0150 13 6 6.0746 1.0136 -3.0716 14 1 5.6277 1.5584 -3.9032 15 6 5.8286 -0.4870 -3.2411 16 6 9.0581 2.3497 -1.2603 17 6 9.1150 3.4121 -0.1562 18 7 8.7480 4.7122 -0.7342 19 6 9.5799 5.7921 -0.6040 20 1 9.5775 6.5691 -1.3542 21 6 10.4263 5.8882 0.4920 22 7 10.2088 5.1478 1.5582 23 14 11.8738 7.0682 0.4537 24 1 11.3774 8.4545 0.2611 25 1 12.6171 6.9817 1.7364 26 1 12.7781 6.7061 -0.6672 27 6 7.4732 4.8332 -1.4548 28 6 7.4254 3.7631 -2.5519 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.9884 3.4635 1.3076 33 1 0.6636 2.2778 1.3969 34 1 2.2354 1.9149 2.1492 35 1 4.2339 1.3802 0.6659 36 1 3.9902 2.9975 -0.0365 37 1 6.9337 1.2427 -0.2632 38 1 6.2383 2.8865 -0.4043 39 1 7.9539 1.6553 -3.9776 40 1 8.1386 0.4017 -2.7071 41 1 6.2623 -1.0239 -2.3975 42 1 4.7560 -0.6773 -3.2801 43 1 6.2921 -0.8289 -4.1665 44 1 9.8391 2.5468 -1.9946 45 1 9.2110 1.3630 -0.8233 46 1 8.4133 3.1534 0.6367 47 1 10.1247 3.4623 0.2512 48 1 10.8004 5.2147 2.3240 49 1 6.6456 4.6832 -0.7614 50 1 7.3993 5.8239 -1.9034 51 1 6.4393 3.7627 -3.0162 52 1 8.1818 3.9818 -3.3058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707126573.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:36 Heat of formation + Delta-G solvation = -37.924468 kcal Electronic energy + Delta-G solvation = -29366.776580 eV Core-core repulsion = 25684.922664 eV Total energy + Delta-G solvation = -3681.853916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.72868 -39.80336 -37.54340 -35.55678 -34.71634 -33.03539 -32.50177 -31.50458 -30.04446 -28.81943 -28.49942 -26.80137 -25.96136 -24.15582 -23.59720 -22.75888 -21.77810 -20.20703 -19.52090 -18.37760 -18.00878 -17.64265 -17.15729 -16.80190 -16.08042 -15.99925 -15.69056 -15.38601 -15.13988 -14.87892 -14.85118 -14.69907 -14.44172 -14.35045 -14.08643 -13.82610 -13.60894 -13.42290 -13.28272 -13.17874 -13.04785 -12.93406 -12.89315 -12.73634 -12.52311 -12.40170 -12.36392 -12.21090 -12.17358 -11.93192 -11.89839 -11.78870 -11.40370 -11.05706 -10.92599 -10.78308 -10.64739 -10.45054 -9.57587 -8.59580 -8.46742 -7.82982 -5.27293 0.79818 1.49063 1.51157 1.57314 1.69711 1.71747 2.03542 2.54402 3.30163 3.38822 3.55700 3.61822 3.73877 3.80739 3.87358 4.13732 4.17082 4.21290 4.27388 4.32469 4.35654 4.36105 4.43421 4.49322 4.55774 4.60448 4.63287 4.71663 4.74756 4.77720 4.80028 4.84290 4.86488 4.94700 4.96666 4.98275 5.08657 5.15101 5.22876 5.25023 5.28848 5.35344 5.41209 5.44847 5.50636 5.59990 5.70482 5.86007 6.44543 6.59138 7.21066 7.23907 7.92847 8.43125 9.22119 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015570 B = 0.003023 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.846981 B = 9260.908470 C =10437.274580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.303 6.303 3 C -0.028 4.028 4 H 0.082 0.918 5 C -0.143 4.143 6 C -0.120 4.120 7 C 0.522 3.478 8 O -0.553 6.553 9 N -0.612 5.612 10 C 0.115 3.885 11 C -0.053 4.053 12 C -0.110 4.110 13 C 0.136 3.864 14 H 0.065 0.935 15 C -0.151 4.151 16 C -0.112 4.112 17 C 0.178 3.822 18 N -0.607 5.607 19 C -0.261 4.261 20 H 0.061 0.939 21 C -0.045 4.045 22 N -0.930 5.930 23 Si 0.960 3.040 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.280 1.280 27 C 0.144 3.856 28 C -0.103 4.103 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.072 0.928 46 H 0.004 0.996 47 H 0.050 0.950 48 H 0.249 0.751 49 H 0.018 0.982 50 H 0.046 0.954 51 H 0.064 0.936 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.262 -10.037 -4.765 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.077 6.077 3 C -0.157 4.157 4 H 0.101 0.899 5 C -0.202 4.202 6 C -0.161 4.161 7 C 0.311 3.689 8 O -0.431 6.431 9 N -0.345 5.345 10 C -0.008 4.008 11 C -0.054 4.054 12 C -0.147 4.147 13 C 0.033 3.967 14 H 0.083 0.917 15 C -0.209 4.209 16 C -0.151 4.151 17 C 0.052 3.948 18 N -0.330 5.330 19 C -0.392 4.392 20 H 0.079 0.921 21 C -0.241 4.241 22 N -0.576 5.576 23 Si 0.788 3.212 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.206 1.206 27 C 0.019 3.981 28 C -0.142 4.142 29 H 0.094 0.906 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.136 0.864 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.022 0.978 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.035 0.965 50 H 0.065 0.935 51 H 0.083 0.917 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.035 -11.151 -5.022 18.616 hybrid contribution 0.123 1.787 0.335 1.822 sum -13.912 -9.364 -4.687 17.413 Atomic orbital electron populations 1.23383 0.91903 1.07049 1.05411 1.87086 1.10117 1.12630 1.97883 1.22823 0.97179 0.93481 1.02248 0.89940 1.22080 1.01998 1.01444 0.94665 1.21569 0.94898 1.04439 0.95170 1.20472 0.80555 0.78460 0.89391 1.90694 1.52595 1.46756 1.53088 1.48712 1.06146 1.61368 1.18316 1.22340 0.86787 0.98319 0.93324 1.20856 0.94348 0.95111 0.95043 1.22760 0.93434 0.98693 0.99857 1.21588 0.93805 0.95313 0.85972 0.91655 1.22030 1.01765 0.94634 1.02476 1.21840 0.95435 0.99188 0.98684 1.20622 0.98933 0.83334 0.91908 1.44255 1.18195 1.06701 1.63884 1.19416 1.15834 1.01286 1.02650 0.92119 1.25674 1.03202 1.00754 0.94490 1.70148 1.38641 1.44630 1.04180 0.85464 0.80091 0.79227 0.76379 1.20450 1.22111 1.20633 1.21048 0.87328 0.96980 0.92792 1.21646 1.00709 0.94050 0.97825 0.90571 0.87449 0.89129 0.90408 0.91163 0.91113 0.87814 0.86399 0.91111 0.90877 0.89022 0.89349 0.92741 0.93495 0.90016 0.92599 0.90944 0.97772 0.93108 0.94168 0.96466 0.93522 0.91728 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 10.45 113.37 1.18 -0.58 16 2 S -0.30 -7.30 20.24 -56.49 -1.14 -8.44 16 3 C -0.03 -0.60 2.44 30.60 0.07 -0.53 16 4 H 0.08 1.91 7.96 -2.39 -0.02 1.89 16 5 C -0.14 -2.27 9.10 71.98 0.66 -1.61 16 6 C -0.12 -2.75 4.19 29.85 0.13 -2.63 16 7 C 0.52 14.73 7.36 87.66 0.64 15.38 16 8 O -0.55 -18.48 13.84 -3.02 -0.04 -18.52 16 9 N -0.61 -16.27 3.06 -788.84 -2.41 -18.69 16 10 C 0.11 3.13 4.68 86.55 0.40 3.53 16 11 C -0.05 -1.47 0.54 -51.93 -0.03 -1.50 16 12 C -0.11 -2.46 5.42 31.56 0.17 -2.29 16 13 C 0.14 3.31 3.09 45.38 0.14 3.46 16 14 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 15 C -0.15 -3.48 9.10 71.98 0.66 -2.82 16 16 C -0.11 -3.68 4.83 30.41 0.15 -3.54 16 17 C 0.18 7.81 5.06 86.41 0.44 8.25 16 18 N -0.61 -28.51 2.98 -698.50 -2.08 -30.59 16 19 C -0.26 -13.86 9.57 84.03 0.80 -13.06 16 20 H 0.06 3.18 7.89 -2.91 -0.02 3.16 16 21 C -0.05 -2.45 4.91 84.86 0.42 -2.04 16 22 N -0.93 -52.89 11.20 21.65 0.24 -52.64 16 23 Si 0.96 43.74 29.59 68.60 2.03 45.77 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 C 0.14 5.54 6.21 86.41 0.54 6.08 16 28 C -0.10 -3.17 4.82 30.41 0.15 -3.02 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.09 1.15 7.14 -2.39 -0.02 1.13 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 0.95 6.92 -2.39 -0.02 0.93 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.12 2.44 7.86 -2.39 -0.02 2.42 16 37 H 0.07 1.89 7.97 -2.39 -0.02 1.87 16 38 H 0.07 2.16 5.58 -2.39 -0.01 2.14 16 39 H 0.09 1.86 8.01 -2.38 -0.02 1.84 16 40 H 0.09 1.80 7.70 -2.39 -0.02 1.78 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.05 1.30 6.90 -2.39 -0.02 1.28 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.07 2.09 8.09 -2.39 -0.02 2.07 16 46 H 0.00 0.19 7.65 -2.39 -0.02 0.17 16 47 H 0.05 2.61 6.04 -2.39 -0.01 2.60 16 48 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 49 H 0.02 0.67 6.59 -2.38 -0.02 0.65 16 50 H 0.05 1.82 7.93 -2.38 -0.02 1.80 16 51 H 0.06 1.82 7.83 -2.39 -0.02 1.80 16 52 H 0.06 1.87 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -64.36 401.77 3.98 -60.39 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.87 Total: 19.65 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 6.52 Total: 3.07 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -4.25 Total: -101.92 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.04 Total: -18.52 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -7.30 SS G_CDS: -1.14 Total: -8.44 kcal Total: -64.36 3.98 -60.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707126573.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.462 kcal (2) G-P(sol) polarization free energy of solvation -64.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds