Wall clock time and date at job start Sat Apr 11 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81402 * 103.00065 * 2 1 4 4 H 1.09001 * 109.46655 * 55.00607 * 3 2 1 5 5 C 1.52998 * 109.47301 * 295.00121 * 3 2 1 6 6 C 1.52999 * 109.47244 * 174.99946 * 3 2 1 7 7 C 1.50704 * 109.47124 * 295.00552 * 6 3 2 8 8 O 1.21277 * 119.99998 * 359.97438 * 7 6 3 9 9 N 1.34781 * 119.99885 * 179.72195 * 7 6 3 10 10 C 1.47575 * 125.62553 * 359.96804 * 9 7 6 11 11 C 1.54377 * 104.65428 * 156.56792 * 10 9 7 12 12 C 1.54387 * 102.36627 * 36.41934 * 11 10 9 13 13 C 1.47080 * 125.62728 * 180.27146 * 9 7 6 14 14 H 1.09002 * 109.87711 * 300.41641 * 13 9 7 15 15 C 1.53003 * 109.87737 * 61.56709 * 13 9 7 16 16 C 1.52106 * 110.58441 * 154.16210 * 11 10 9 17 17 C 1.53340 * 109.44378 * 183.27631 * 16 11 10 18 18 N 1.46935 * 108.68661 * 306.70374 * 17 16 11 19 19 C 1.36941 * 120.54982 * 234.36963 * 18 17 16 20 20 H 1.08000 * 119.99773 * 27.95370 * 19 18 17 21 21 C 1.38810 * 119.99588 * 207.95746 * 19 18 17 22 22 N 1.31617 * 120.00217 * 17.46861 * 21 19 18 23 23 Si 1.86806 * 119.99491 * 197.46642 * 21 19 18 24 24 H 1.48495 * 109.47330 * 60.00016 * 23 21 19 25 25 H 1.48506 * 109.46662 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47151 * 299.99733 * 23 21 19 27 27 C 1.46932 * 118.89720 * 54.34452 * 18 17 16 28 28 C 1.52108 * 110.91242 * 278.52949 * 11 10 9 29 29 H 1.09008 * 109.47018 * 299.99816 * 1 2 3 30 30 H 1.09008 * 109.47277 * 59.99534 * 1 2 3 31 31 H 1.08992 * 109.47316 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47058 * 60.00326 * 5 3 2 33 33 H 1.08997 * 109.46892 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.46978 * 299.99884 * 5 3 2 35 35 H 1.08996 * 109.47162 * 175.00431 * 6 3 2 36 36 H 1.09002 * 109.47167 * 54.99975 * 6 3 2 37 37 H 1.08996 * 110.37654 * 275.49643 * 10 9 7 38 38 H 1.08994 * 110.37784 * 37.85499 * 10 9 7 39 39 H 1.09003 * 110.73446 * 206.81322 * 12 11 10 40 40 H 1.09000 * 110.73669 * 83.49876 * 12 11 10 41 41 H 1.09000 * 109.47087 * 58.54076 * 15 13 9 42 42 H 1.09003 * 109.46852 * 178.54747 * 15 13 9 43 43 H 1.09004 * 109.46698 * 298.54414 * 15 13 9 44 44 H 1.08999 * 109.47563 * 303.26486 * 16 11 10 45 45 H 1.08995 * 109.47671 * 63.28354 * 16 11 10 46 46 H 1.08997 * 109.60359 * 186.94216 * 17 16 11 47 47 H 1.08997 * 109.73635 * 66.53780 * 17 16 11 48 48 H 0.97006 * 119.99782 * 180.02562 * 22 21 19 49 49 H 1.08998 * 109.60251 * 185.89127 * 27 18 17 50 50 H 1.09002 * 109.72997 * 65.48803 * 27 18 17 51 51 H 1.09005 * 109.47169 * 296.89538 * 28 11 10 52 52 H 1.08996 * 109.47930 * 56.90342 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2540 0.8419 5 6 1.7428 2.4016 -1.3073 6 6 3.7369 1.9412 0.1257 7 6 4.1919 1.4269 1.4672 8 8 3.3840 0.9672 2.2462 9 7 5.4974 1.4731 1.7993 10 6 6.5827 1.9985 0.9484 11 6 7.7021 2.3862 1.9382 12 6 7.5947 1.2791 3.0089 13 6 6.0762 1.0026 3.0668 14 1 5.6321 1.5455 3.9012 15 6 5.8265 -0.4984 3.2273 16 6 9.0604 2.3373 1.2553 17 6 10.1583 2.6463 2.2802 18 7 9.8363 3.9155 2.9469 19 6 10.7455 4.9391 2.9715 20 1 11.4733 5.0340 2.1792 21 6 10.7318 5.8547 4.0148 22 7 10.1027 5.5670 5.1345 23 14 11.6061 7.4950 3.8294 24 1 11.0194 8.2425 2.6883 25 1 11.4439 8.2859 5.0758 26 1 13.0506 7.2603 3.5772 27 6 8.5222 4.0681 3.5863 28 6 7.4337 3.7510 2.5539 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.6635 2.2780 -1.3968 33 1 1.9876 3.4638 -1.3070 34 1 2.2354 1.9150 -2.1491 35 1 3.9902 2.9976 0.0367 36 1 4.2339 1.3804 -0.6659 37 1 6.9312 1.2290 0.2596 38 1 6.2427 2.8759 0.3983 39 1 7.9587 1.6371 3.9720 40 1 8.1378 0.3869 2.6973 41 1 6.2680 -1.0321 2.3857 42 1 6.2803 -0.8449 4.1558 43 1 4.7533 -0.6872 3.2547 44 1 9.2219 1.3433 0.8383 45 1 9.0916 3.0767 0.4551 46 1 11.1187 2.7336 1.7721 47 1 10.2072 1.8470 3.0196 48 1 10.0928 6.2070 5.8635 49 1 8.4041 5.0926 3.9393 50 1 8.4401 3.3798 4.4275 51 1 7.4421 4.5104 1.7720 52 1 6.4597 3.7438 3.0431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707126574.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:40 Heat of formation + Delta-G solvation = -22.750265 kcal Electronic energy + Delta-G solvation = -29117.878689 eV Core-core repulsion = 25436.682776 eV Total energy + Delta-G solvation = -3681.195913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.52911 -38.59962 -36.03772 -34.72734 -33.10424 -31.81241 -30.82178 -29.98495 -29.34141 -27.90695 -27.01364 -25.94756 -24.05646 -22.98236 -22.29734 -21.21431 -20.91087 -18.85326 -18.08842 -17.01257 -16.80219 -16.53808 -16.08306 -15.20589 -15.01351 -14.81229 -14.32842 -13.99048 -13.89849 -13.82246 -13.74542 -13.45251 -13.32480 -13.03728 -12.95422 -12.80433 -12.62300 -12.42084 -12.27352 -12.18476 -11.91871 -11.65252 -11.57794 -11.46111 -11.43371 -11.15713 -10.81836 -10.72284 -10.65624 -10.49277 -10.21789 -10.07230 -9.95901 -9.84217 -9.67473 -9.52797 -9.40166 -8.47855 -8.44544 -7.59787 -6.67052 -5.80046 -3.22019 1.55214 2.44058 2.77858 3.06307 3.37001 3.43305 3.44074 4.35227 4.39328 4.48610 4.71910 4.77673 4.89073 4.93396 4.97481 5.07600 5.08909 5.21685 5.27782 5.29485 5.35955 5.37291 5.40738 5.47837 5.51844 5.59487 5.62484 5.68710 5.73334 5.79466 5.82197 5.87923 6.06571 6.08523 6.20204 6.26042 6.31331 6.38149 6.49527 6.58693 6.61882 6.68290 6.73807 6.85035 6.96522 7.34689 7.65644 7.69134 7.78381 8.31496 8.44380 9.20545 9.84299 10.40632 11.28199 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.002603 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.203107 B =10755.709524 C =11258.771843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.239 6.239 3 C -0.043 4.043 4 H 0.093 0.907 5 C -0.148 4.148 6 C -0.121 4.121 7 C 0.523 3.477 8 O -0.524 6.524 9 N -0.610 5.610 10 C 0.105 3.895 11 C -0.055 4.055 12 C -0.119 4.119 13 C 0.138 3.862 14 H 0.073 0.927 15 C -0.159 4.159 16 C -0.117 4.117 17 C 0.147 3.853 18 N -0.591 5.591 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.173 3.827 28 C -0.124 4.124 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.254 0.746 49 H 0.086 0.914 50 H 0.020 0.980 51 H 0.055 0.945 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.006 -9.439 -11.948 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.013 6.013 3 C -0.172 4.172 4 H 0.112 0.888 5 C -0.207 4.207 6 C -0.161 4.161 7 C 0.311 3.689 8 O -0.400 6.400 9 N -0.345 5.345 10 C -0.018 4.018 11 C -0.055 4.055 12 C -0.157 4.157 13 C 0.035 3.965 14 H 0.091 0.909 15 C -0.217 4.217 16 C -0.157 4.157 17 C 0.020 3.980 18 N -0.313 5.313 19 C -0.382 4.382 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.047 3.953 28 C -0.164 4.164 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.037 0.963 48 H 0.064 0.936 49 H 0.105 0.895 50 H 0.038 0.962 51 H 0.074 0.926 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.859 -10.463 -11.369 21.436 hybrid contribution -0.374 1.948 -0.075 1.985 sum -15.233 -8.515 -11.444 20.869 Atomic orbital electron populations 1.23371 0.95234 1.06119 1.04550 1.86928 1.06271 1.10355 1.97721 1.22873 0.97906 0.95026 1.01403 0.88838 1.22107 1.01428 1.01046 0.96108 1.21510 0.94264 1.03710 0.96657 1.20039 0.80844 0.79208 0.88805 1.90724 1.51946 1.45389 1.51921 1.48627 1.05938 1.61604 1.18317 1.22519 0.87596 0.97965 0.93717 1.21022 0.94051 0.96221 0.94252 1.22804 0.93112 0.98493 1.01268 1.21585 0.93929 0.94739 0.86223 0.90913 1.22112 1.02940 0.95192 1.01464 1.21842 0.94715 0.99992 0.99156 1.20899 0.94911 0.89081 0.93073 1.44034 1.12614 1.10541 1.64160 1.19134 1.11931 1.03626 1.03537 0.91802 1.25024 0.99859 1.00155 0.94580 1.70019 1.46683 1.34732 1.03229 0.86398 0.79506 0.84188 0.76846 1.21089 1.21676 1.20906 1.20801 0.81996 1.01816 0.90691 1.21996 0.99807 0.94048 1.00516 0.90606 0.90899 0.88423 0.92291 0.91468 0.91219 0.87646 0.88325 0.91725 0.91015 0.89085 0.90997 0.92905 0.91940 0.91408 0.92913 0.92113 0.92876 0.96299 0.93593 0.89534 0.96245 0.92630 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.45 101.05 1.06 0.04 16 2 S -0.24 -2.74 20.24 -107.50 -2.18 -4.92 16 3 C -0.04 -0.43 2.44 -26.73 -0.07 -0.49 16 4 H 0.09 1.04 7.95 -51.92 -0.41 0.63 16 5 C -0.15 -1.07 9.10 37.16 0.34 -0.73 16 6 C -0.12 -1.24 4.18 -27.88 -0.12 -1.36 16 7 C 0.52 7.26 7.35 -10.98 -0.08 7.18 16 8 O -0.52 -8.79 13.83 5.56 0.08 -8.71 16 9 N -0.61 -8.32 3.05 -163.10 -0.50 -8.82 16 10 C 0.10 1.31 5.60 -2.73 -0.02 1.29 16 11 C -0.05 -0.82 0.55 -153.97 -0.08 -0.90 16 12 C -0.12 -1.73 4.45 -25.24 -0.11 -1.85 16 13 C 0.14 1.98 3.08 -66.85 -0.21 1.77 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.16 -2.12 9.10 37.16 0.34 -1.78 16 16 C -0.12 -1.81 4.84 -27.01 -0.13 -1.94 16 17 C 0.15 2.86 6.24 -3.63 -0.02 2.84 16 18 N -0.59 -14.03 2.98 -172.13 -0.51 -14.54 16 19 C -0.25 -6.71 9.57 -15.06 -0.14 -6.85 16 20 H 0.06 1.67 7.89 -52.49 -0.41 1.25 16 21 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 22 N -0.90 -25.68 11.20 55.49 0.62 -25.06 16 23 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.17 3.90 5.02 -3.63 -0.02 3.88 16 28 C -0.12 -2.22 4.87 -27.01 -0.13 -2.35 16 29 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.07 0.48 7.14 -51.92 -0.37 0.11 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.39 6.92 -51.93 -0.36 0.03 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.92 7.87 -51.93 -0.41 0.51 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.73 8.00 -51.93 -0.42 0.32 16 38 H 0.07 0.82 7.41 -51.93 -0.38 0.43 16 39 H 0.09 1.51 6.18 -51.93 -0.32 1.19 16 40 H 0.07 0.97 7.68 -51.93 -0.40 0.57 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.01 6.88 -51.93 -0.36 0.66 16 44 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 47 H 0.02 0.37 7.63 -51.93 -0.40 -0.02 16 48 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.09 2.25 6.01 -51.93 -0.31 1.94 16 50 H 0.02 0.46 6.56 -51.93 -0.34 0.12 16 51 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 52 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 LS Contribution 401.65 15.07 6.05 6.05 Total: -1.00 -30.33 401.65 -10.44 -40.77 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -9.49 Total: 0.23 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 0.52 Total: -1.28 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.39 Total: -48.42 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.18 Total: -4.92 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.33 -10.44 -40.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707126574.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.021 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds