Wall clock time and date at job start Sat Apr 11 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81402 * 103.00065 * 2 1 4 4 H 1.09001 * 109.46655 * 55.00607 * 3 2 1 5 5 C 1.52998 * 109.47301 * 295.00121 * 3 2 1 6 6 C 1.52999 * 109.47244 * 174.99946 * 3 2 1 7 7 C 1.50704 * 109.47124 * 295.00552 * 6 3 2 8 8 O 1.21277 * 119.99998 * 359.97438 * 7 6 3 9 9 N 1.34781 * 119.99885 * 179.72195 * 7 6 3 10 10 C 1.47575 * 125.62553 * 359.96804 * 9 7 6 11 11 C 1.54377 * 104.65428 * 156.56792 * 10 9 7 12 12 C 1.54387 * 102.36627 * 36.41934 * 11 10 9 13 13 C 1.47080 * 125.62728 * 180.27146 * 9 7 6 14 14 H 1.09002 * 109.87711 * 300.41641 * 13 9 7 15 15 C 1.53003 * 109.87737 * 61.56709 * 13 9 7 16 16 C 1.52106 * 110.58441 * 154.16210 * 11 10 9 17 17 C 1.53340 * 109.44378 * 183.27631 * 16 11 10 18 18 N 1.46935 * 108.68661 * 306.70374 * 17 16 11 19 19 C 1.36941 * 120.54982 * 234.36963 * 18 17 16 20 20 H 1.08000 * 119.99773 * 27.95370 * 19 18 17 21 21 C 1.38810 * 119.99588 * 207.95746 * 19 18 17 22 22 N 1.31617 * 120.00217 * 17.46861 * 21 19 18 23 23 Si 1.86806 * 119.99491 * 197.46642 * 21 19 18 24 24 H 1.48495 * 109.47330 * 60.00016 * 23 21 19 25 25 H 1.48506 * 109.46662 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47151 * 299.99733 * 23 21 19 27 27 C 1.46932 * 118.89720 * 54.34452 * 18 17 16 28 28 C 1.52108 * 110.91242 * 278.52949 * 11 10 9 29 29 H 1.09008 * 109.47018 * 299.99816 * 1 2 3 30 30 H 1.09008 * 109.47277 * 59.99534 * 1 2 3 31 31 H 1.08992 * 109.47316 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47058 * 60.00326 * 5 3 2 33 33 H 1.08997 * 109.46892 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.46978 * 299.99884 * 5 3 2 35 35 H 1.08996 * 109.47162 * 175.00431 * 6 3 2 36 36 H 1.09002 * 109.47167 * 54.99975 * 6 3 2 37 37 H 1.08996 * 110.37654 * 275.49643 * 10 9 7 38 38 H 1.08994 * 110.37784 * 37.85499 * 10 9 7 39 39 H 1.09003 * 110.73446 * 206.81322 * 12 11 10 40 40 H 1.09000 * 110.73669 * 83.49876 * 12 11 10 41 41 H 1.09000 * 109.47087 * 58.54076 * 15 13 9 42 42 H 1.09003 * 109.46852 * 178.54747 * 15 13 9 43 43 H 1.09004 * 109.46698 * 298.54414 * 15 13 9 44 44 H 1.08999 * 109.47563 * 303.26486 * 16 11 10 45 45 H 1.08995 * 109.47671 * 63.28354 * 16 11 10 46 46 H 1.08997 * 109.60359 * 186.94216 * 17 16 11 47 47 H 1.08997 * 109.73635 * 66.53780 * 17 16 11 48 48 H 0.97006 * 119.99782 * 180.02562 * 22 21 19 49 49 H 1.08998 * 109.60251 * 185.89127 * 27 18 17 50 50 H 1.09002 * 109.72997 * 65.48803 * 27 18 17 51 51 H 1.09005 * 109.47169 * 296.89538 * 28 11 10 52 52 H 1.08996 * 109.47930 * 56.90342 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2540 0.8419 5 6 1.7428 2.4016 -1.3073 6 6 3.7369 1.9412 0.1257 7 6 4.1919 1.4269 1.4672 8 8 3.3840 0.9672 2.2462 9 7 5.4974 1.4731 1.7993 10 6 6.5827 1.9985 0.9484 11 6 7.7021 2.3862 1.9382 12 6 7.5947 1.2791 3.0089 13 6 6.0762 1.0026 3.0668 14 1 5.6321 1.5455 3.9012 15 6 5.8265 -0.4984 3.2273 16 6 9.0604 2.3373 1.2553 17 6 10.1583 2.6463 2.2802 18 7 9.8363 3.9155 2.9469 19 6 10.7455 4.9391 2.9715 20 1 11.4733 5.0340 2.1792 21 6 10.7318 5.8547 4.0148 22 7 10.1027 5.5670 5.1345 23 14 11.6061 7.4950 3.8294 24 1 11.0194 8.2425 2.6883 25 1 11.4439 8.2859 5.0758 26 1 13.0506 7.2603 3.5772 27 6 8.5222 4.0681 3.5863 28 6 7.4337 3.7510 2.5539 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.6635 2.2780 -1.3968 33 1 1.9876 3.4638 -1.3070 34 1 2.2354 1.9150 -2.1491 35 1 3.9902 2.9976 0.0367 36 1 4.2339 1.3804 -0.6659 37 1 6.9312 1.2290 0.2596 38 1 6.2427 2.8759 0.3983 39 1 7.9587 1.6371 3.9720 40 1 8.1378 0.3869 2.6973 41 1 6.2680 -1.0321 2.3857 42 1 6.2803 -0.8449 4.1558 43 1 4.7533 -0.6872 3.2547 44 1 9.2219 1.3433 0.8383 45 1 9.0916 3.0767 0.4551 46 1 11.1187 2.7336 1.7721 47 1 10.2072 1.8470 3.0196 48 1 10.0928 6.2070 5.8635 49 1 8.4041 5.0926 3.9393 50 1 8.4401 3.3798 4.4275 51 1 7.4421 4.5104 1.7720 52 1 6.4597 3.7438 3.0431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707126574.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:39 Heat of formation + Delta-G solvation = -38.395596 kcal Electronic energy + Delta-G solvation = -29118.557121 eV Core-core repulsion = 25436.682776 eV Total energy + Delta-G solvation = -3681.874346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.69260 -39.82359 -37.51295 -35.54037 -34.75352 -32.87349 -32.53374 -31.59168 -30.03863 -28.85561 -28.31771 -27.12520 -25.73176 -24.09409 -23.60654 -22.58810 -22.13017 -19.94134 -19.58854 -18.40920 -17.92066 -17.61557 -17.16760 -16.83748 -16.14224 -15.97099 -15.64047 -15.36490 -15.14505 -14.97852 -14.70619 -14.62166 -14.51817 -14.33559 -14.10209 -13.89975 -13.61190 -13.41684 -13.35941 -13.15931 -13.07840 -12.94167 -12.86793 -12.72370 -12.52157 -12.33639 -12.28891 -12.20616 -12.13334 -11.99223 -11.77403 -11.71299 -11.38442 -11.07296 -11.00437 -10.75432 -10.62063 -10.47140 -9.56062 -8.61514 -8.44904 -7.84040 -5.28248 0.81872 1.47769 1.49704 1.56254 1.71258 1.75044 2.04723 2.53556 3.29171 3.41723 3.56111 3.64216 3.74213 3.82664 3.89618 4.16442 4.20853 4.23810 4.28172 4.31928 4.32615 4.35649 4.47544 4.52256 4.57539 4.61062 4.65539 4.72345 4.76771 4.78743 4.83006 4.87237 4.88012 4.96117 4.98012 4.99980 5.07227 5.13769 5.25730 5.27089 5.30865 5.34768 5.43313 5.46663 5.50057 5.59102 5.69328 5.83658 6.42829 6.64812 7.19060 7.27024 7.92491 8.42798 9.21461 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.002603 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.203107 B =10755.709524 C =11258.771843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.303 6.303 3 C -0.032 4.032 4 H 0.076 0.924 5 C -0.141 4.141 6 C -0.115 4.115 7 C 0.517 3.483 8 O -0.560 6.560 9 N -0.612 5.612 10 C 0.113 3.887 11 C -0.054 4.054 12 C -0.111 4.111 13 C 0.139 3.861 14 H 0.047 0.953 15 C -0.148 4.148 16 C -0.104 4.104 17 C 0.140 3.860 18 N -0.608 5.608 19 C -0.257 4.257 20 H 0.068 0.932 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.962 3.038 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.275 1.275 27 C 0.182 3.818 28 C -0.107 4.107 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.015 0.985 48 H 0.247 0.753 49 H 0.046 0.954 50 H -0.004 1.004 51 H 0.055 0.945 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.391 -9.863 -15.235 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.078 6.078 3 C -0.161 4.161 4 H 0.094 0.906 5 C -0.200 4.200 6 C -0.156 4.156 7 C 0.306 3.694 8 O -0.438 6.438 9 N -0.346 5.346 10 C -0.009 4.009 11 C -0.055 4.055 12 C -0.149 4.149 13 C 0.036 3.964 14 H 0.066 0.934 15 C -0.206 4.206 16 C -0.143 4.143 17 C 0.015 3.985 18 N -0.332 5.332 19 C -0.388 4.388 20 H 0.085 0.915 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.791 3.209 24 H -0.204 1.204 25 H -0.225 1.225 26 H -0.201 1.201 27 C 0.056 3.944 28 C -0.147 4.147 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.145 0.855 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.033 0.967 48 H 0.056 0.944 49 H 0.064 0.936 50 H 0.014 0.986 51 H 0.074 0.926 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.235 -10.901 -14.699 23.812 hybrid contribution -0.250 2.030 1.012 2.282 sum -15.485 -8.871 -13.688 22.491 Atomic orbital electron populations 1.23377 0.92190 1.06960 1.05319 1.87079 1.09866 1.12950 1.97859 1.22870 0.97667 0.93259 1.02289 0.90589 1.22066 1.01843 1.01559 0.94494 1.21585 0.94483 1.04931 0.94564 1.20729 0.80368 0.78497 0.89775 1.90711 1.52808 1.46947 1.53370 1.48702 1.06388 1.61495 1.18049 1.22525 0.85922 0.99562 0.92855 1.20940 0.95282 0.94226 0.95021 1.22686 0.93301 0.99008 0.99870 1.21460 0.93575 0.95136 0.86253 0.93441 1.22001 1.01714 0.94509 1.02413 1.21694 0.92807 1.02106 0.97681 1.21092 0.96725 0.86993 0.93661 1.44294 1.12603 1.11771 1.64498 1.19488 1.11864 1.04308 1.03102 0.91479 1.25758 1.01312 1.03291 0.94459 1.70186 1.48697 1.35457 1.03930 0.85413 0.78753 0.80360 0.76378 1.20396 1.22480 1.20114 1.20540 0.83533 0.98800 0.91546 1.21730 0.97689 0.96189 0.99047 0.90907 0.88970 0.87605 0.91679 0.90059 0.90573 0.85474 0.86678 0.89007 0.89129 0.91921 0.89112 0.91771 0.91095 0.93358 0.89277 0.91695 0.92930 0.96689 0.94353 0.93592 0.98577 0.92616 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.45 113.37 1.18 -0.47 16 2 S -0.30 -6.65 20.24 -56.49 -1.14 -7.80 16 3 C -0.03 -0.57 2.44 30.59 0.07 -0.50 16 4 H 0.08 1.63 7.95 -2.39 -0.02 1.61 16 5 C -0.14 -1.61 9.10 71.98 0.66 -0.96 16 6 C -0.12 -2.04 4.18 29.85 0.12 -1.92 16 7 C 0.52 13.56 7.35 87.66 0.64 14.20 16 8 O -0.56 -18.79 13.83 -3.02 -0.04 -18.83 16 9 N -0.61 -15.45 3.05 -788.33 -2.41 -17.86 16 10 C 0.11 2.38 5.60 86.64 0.49 2.87 16 11 C -0.05 -1.49 0.55 -51.83 -0.03 -1.51 16 12 C -0.11 -3.10 4.45 31.56 0.14 -2.96 16 13 C 0.14 3.89 3.08 45.38 0.14 4.03 16 14 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 15 C -0.15 -3.82 9.10 71.98 0.66 -3.17 16 16 C -0.10 -2.86 4.84 30.41 0.15 -2.71 16 17 C 0.14 5.30 6.24 86.41 0.54 5.84 16 18 N -0.61 -29.13 2.98 -698.50 -2.08 -31.21 16 19 C -0.26 -13.77 9.57 84.03 0.80 -12.96 16 20 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 21 C -0.05 -2.94 4.90 84.86 0.42 -2.52 16 22 N -0.94 -55.38 11.20 21.65 0.24 -55.14 16 23 Si 0.96 44.46 29.59 68.60 2.03 46.49 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 27 C 0.18 8.48 5.02 86.41 0.43 8.92 16 28 C -0.11 -3.79 4.87 30.41 0.15 -3.64 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.01 7.14 -2.39 -0.02 1.00 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 0.67 6.92 -2.39 -0.02 0.66 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.13 1.72 7.87 -2.39 -0.02 1.70 16 36 H 0.12 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.09 1.55 8.00 -2.39 -0.02 1.53 16 38 H 0.09 1.63 7.41 -2.39 -0.02 1.61 16 39 H 0.06 2.13 6.18 -2.39 -0.01 2.12 16 40 H 0.09 2.21 7.68 -2.39 -0.02 2.19 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 43 H 0.05 1.44 6.88 -2.38 -0.02 1.43 16 44 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 45 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 47 H 0.02 0.58 7.63 -2.39 -0.02 0.56 16 48 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 49 H 0.05 2.51 6.01 -2.39 -0.01 2.49 16 50 H 0.00 -0.19 6.56 -2.39 -0.02 -0.20 16 51 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 52 H 0.05 1.68 7.82 -2.39 -0.02 1.66 16 Total: -1.00 -69.20 401.65 4.03 -65.17 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.87 Total: 16.63 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 6.57 Total: 2.54 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -4.25 Total: -104.21 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.04 Total: -18.83 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -6.65 SS G_CDS: -1.14 Total: -7.80 kcal Total: -69.20 4.03 -65.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707126574.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.776 kcal (2) G-P(sol) polarization free energy of solvation -69.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds