Wall clock time and date at job start Sat Apr 11 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81402 * 102.99937 * 2 1 4 4 H 1.09003 * 109.47061 * 55.00616 * 3 2 1 5 5 C 1.52994 * 109.47482 * 295.00253 * 3 2 1 6 6 C 1.53002 * 109.47269 * 174.99970 * 3 2 1 7 7 C 1.50704 * 109.47104 * 295.00379 * 6 3 2 8 8 O 1.21284 * 120.00173 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00161 * 179.97438 * 7 6 3 10 10 C 1.47581 * 125.62669 * 0.02562 * 9 7 6 11 11 C 1.54120 * 104.78078 * 203.29953 * 10 9 7 12 12 C 1.54385 * 102.47844 * 323.92000 * 11 10 9 13 13 C 1.47084 * 125.63095 * 179.97438 * 9 7 6 14 14 H 1.09008 * 109.87481 * 59.60835 * 13 9 7 15 15 C 1.52997 * 109.87739 * 298.46002 * 13 9 7 16 16 C 1.52114 * 110.69761 * 206.07116 * 11 10 9 17 17 C 1.53339 * 109.44386 * 176.91769 * 16 11 10 18 18 N 1.46931 * 108.68543 * 53.29940 * 17 16 11 19 19 C 1.36940 * 120.54807 * 125.63278 * 18 17 16 20 20 H 1.08004 * 120.00017 * 331.82734 * 19 18 17 21 21 C 1.38813 * 119.99810 * 151.82016 * 19 18 17 22 22 N 1.31616 * 119.99949 * 335.54864 * 21 19 18 23 23 Si 1.86802 * 119.99755 * 155.54079 * 21 19 18 24 24 H 1.48505 * 109.47054 * 179.97438 * 23 21 19 25 25 H 1.48492 * 109.47372 * 300.00576 * 23 21 19 26 26 H 1.48509 * 109.46823 * 60.00803 * 23 21 19 27 27 C 1.46930 * 118.90329 * 305.91144 * 18 17 16 28 28 C 1.52108 * 110.69596 * 81.78203 * 11 10 9 29 29 H 1.08997 * 109.47171 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46770 * 299.99693 * 1 2 3 31 31 H 1.09003 * 109.47322 * 59.99687 * 1 2 3 32 32 H 1.09010 * 109.47311 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47325 * 299.99708 * 5 3 2 34 34 H 1.08997 * 109.47164 * 59.99885 * 5 3 2 35 35 H 1.08993 * 109.47178 * 175.00645 * 6 3 2 36 36 H 1.08996 * 109.46743 * 55.00165 * 6 3 2 37 37 H 1.08993 * 110.37423 * 84.47079 * 10 9 7 38 38 H 1.09004 * 110.37498 * 322.12417 * 10 9 7 39 39 H 1.09010 * 110.73273 * 152.99032 * 12 11 10 40 40 H 1.09005 * 110.73602 * 276.29854 * 12 11 10 41 41 H 1.09000 * 109.47256 * 302.16108 * 15 13 9 42 42 H 1.08994 * 109.47374 * 62.16566 * 15 13 9 43 43 H 1.09000 * 109.46477 * 182.16244 * 15 13 9 44 44 H 1.09008 * 109.47251 * 56.92910 * 16 11 10 45 45 H 1.08999 * 109.48209 * 296.91561 * 16 11 10 46 46 H 1.08995 * 109.60229 * 293.54288 * 17 16 11 47 47 H 1.08994 * 109.73469 * 173.14067 * 17 16 11 48 48 H 0.96993 * 120.00586 * 354.24394 * 22 21 19 49 49 H 1.08995 * 109.59904 * 173.84448 * 27 18 17 50 50 H 1.08998 * 109.59868 * 294.32792 * 27 18 17 51 51 H 1.08998 * 109.47471 * 303.06981 * 28 11 10 52 52 H 1.09000 * 109.47439 * 63.08418 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7427 2.4017 -1.3072 6 6 3.7370 1.9413 0.1257 7 6 4.1919 1.4270 1.4673 8 8 3.3842 0.9664 2.2459 9 7 5.4966 1.4779 1.8013 10 6 6.5810 2.0098 0.9533 11 6 7.8598 1.3262 1.4755 12 6 7.5994 1.2479 2.9952 13 6 6.0746 1.0136 3.0717 14 1 5.8692 -0.0485 3.2060 15 6 5.4829 1.8120 4.2350 16 6 9.0833 2.1831 1.1880 17 6 10.3268 1.5144 1.7861 18 7 10.3997 0.1314 1.2953 19 6 11.5298 -0.3275 0.6728 20 1 12.1676 0.3593 0.1362 21 6 11.8557 -1.6756 0.7316 22 7 11.4103 -2.4176 1.7233 23 14 12.9262 -2.4365 -0.5967 24 1 13.1268 -3.8787 -0.3051 25 1 12.2609 -2.2854 -1.9156 26 1 14.2428 -1.7500 -0.6249 27 6 9.2377 -0.7491 1.4778 28 6 8.0024 -0.0690 0.8865 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.9876 3.4639 -1.3070 33 1 2.2353 1.9152 -2.1491 34 1 0.6635 2.2780 -1.3968 35 1 3.9901 2.9976 0.0367 36 1 4.2338 1.3805 -0.6659 37 1 6.6555 3.0913 1.0664 38 1 6.4097 1.7474 -0.0907 39 1 8.1412 0.4115 3.4370 40 1 7.8703 2.1848 3.4820 41 1 5.6763 2.8738 4.0825 42 1 4.4074 1.6417 4.2827 43 1 5.9436 1.4892 5.1686 44 1 8.9500 3.1684 1.6349 45 1 9.2093 2.2869 0.1103 46 1 10.2539 1.5130 2.8736 47 1 11.2203 2.0586 1.4803 48 1 10.9252 -2.0074 2.4561 49 1 9.4123 -1.6956 0.9663 50 1 9.0789 -0.9291 2.5410 51 1 7.1148 -0.6557 1.1229 52 1 8.1130 0.0030 -0.1955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707126575.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:44 Heat of formation + Delta-G solvation = -25.084794 kcal Electronic energy + Delta-G solvation = -29211.843432 eV Core-core repulsion = 25530.546286 eV Total energy + Delta-G solvation = -3681.297146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.62610 -38.70415 -36.22920 -34.76839 -33.31231 -31.89682 -30.81608 -30.05406 -29.34005 -27.92320 -26.94952 -26.02625 -23.95173 -23.05923 -22.40191 -21.26530 -20.93026 -18.92971 -18.18657 -17.27689 -16.96533 -16.77620 -16.00337 -15.66394 -14.70492 -14.61536 -14.28322 -14.13948 -14.04716 -13.92270 -13.65511 -13.51528 -13.39703 -13.29423 -13.05412 -12.81941 -12.65082 -12.49235 -12.37925 -12.29634 -12.01631 -11.70293 -11.68148 -11.63988 -11.48208 -11.00234 -10.91250 -10.75738 -10.66160 -10.40807 -10.20606 -10.04428 -9.93994 -9.87143 -9.73278 -9.63118 -9.23736 -8.53716 -8.36290 -7.58082 -6.86343 -6.05564 -3.22976 1.55594 2.45063 2.72413 2.99750 3.49693 3.53126 3.71183 4.30142 4.36330 4.60022 4.63040 4.71404 4.86555 4.92428 4.96889 5.00836 5.01845 5.15899 5.20302 5.22906 5.26333 5.31254 5.37942 5.42722 5.46946 5.54021 5.57196 5.62635 5.63069 5.71574 5.77999 5.78645 5.94509 5.97615 6.08731 6.15027 6.18678 6.27399 6.34736 6.47426 6.52969 6.55125 6.61298 6.73981 6.81236 7.07446 7.21813 7.62315 8.01264 8.25825 8.58782 9.12972 9.85473 10.30291 11.22621 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.002857 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.920977 B = 9798.464254 C =10524.391144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.234 6.234 3 C -0.044 4.044 4 H 0.092 0.908 5 C -0.148 4.148 6 C -0.121 4.121 7 C 0.524 3.476 8 O -0.523 6.523 9 N -0.611 5.611 10 C 0.106 3.894 11 C -0.055 4.055 12 C -0.119 4.119 13 C 0.138 3.862 14 H 0.074 0.926 15 C -0.158 4.158 16 C -0.117 4.117 17 C 0.149 3.851 18 N -0.598 5.598 19 C -0.349 4.349 20 H 0.055 0.945 21 C -0.024 4.024 22 N -0.916 5.916 23 Si 1.063 2.937 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.153 3.847 28 C -0.120 4.120 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.017 0.983 47 H 0.054 0.946 48 H 0.269 0.731 49 H 0.078 0.922 50 H 0.018 0.982 51 H 0.052 0.948 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.508 12.229 -2.894 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.008 6.008 3 C -0.173 4.173 4 H 0.110 0.890 5 C -0.207 4.207 6 C -0.161 4.161 7 C 0.311 3.689 8 O -0.398 6.398 9 N -0.345 5.345 10 C -0.017 4.017 11 C -0.056 4.056 12 C -0.157 4.157 13 C 0.035 3.965 14 H 0.092 0.908 15 C -0.216 4.216 16 C -0.157 4.157 17 C 0.023 3.977 18 N -0.322 5.322 19 C -0.479 4.479 20 H 0.072 0.928 21 C -0.226 4.226 22 N -0.556 5.556 23 Si 0.893 3.107 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.027 3.973 28 C -0.159 4.159 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.035 0.965 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.035 0.965 51 H 0.070 0.930 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.678 9.651 -3.032 20.367 hybrid contribution -1.433 2.612 0.478 3.018 sum -19.110 12.263 -2.554 22.850 Atomic orbital electron populations 1.23376 0.95344 1.06198 1.04439 1.87114 1.06115 1.09869 1.97695 1.22865 0.97797 0.95357 1.01302 0.88964 1.22111 1.01482 1.00885 0.96218 1.21510 0.94387 1.03493 0.96759 1.20056 0.80829 0.79188 0.88791 1.90728 1.51912 1.45182 1.52023 1.48623 1.06085 1.61902 1.17939 1.22450 0.86751 0.97693 0.94816 1.20969 0.93172 0.96825 0.94645 1.22795 0.93101 1.03116 0.96643 1.21579 0.93052 0.98528 0.83365 0.90811 1.22103 1.02187 0.99715 0.97638 1.21835 0.95579 0.96861 1.01407 1.20884 0.94684 0.86955 0.95173 1.44087 1.12101 1.07814 1.68153 1.19957 1.03014 0.95525 1.29367 0.92769 1.25824 1.01059 0.94578 1.01130 1.70781 1.37772 1.39309 1.07702 0.83552 0.75460 0.76266 0.75433 1.21112 1.22079 1.22036 1.20883 0.84847 0.94800 0.96776 1.21810 0.99607 0.94131 1.00335 0.88347 0.90683 0.90911 0.91612 0.91115 0.92263 0.87848 0.88104 0.91670 0.90881 0.89343 0.90902 0.92912 0.91532 0.91853 0.92818 0.92007 0.96510 0.92708 0.92028 0.90320 0.96459 0.92977 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.45 101.05 1.06 -0.01 16 2 S -0.23 -2.84 20.24 -107.50 -2.18 -5.02 16 3 C -0.04 -0.43 2.44 -26.73 -0.07 -0.50 16 4 H 0.09 0.98 7.96 -51.92 -0.41 0.56 16 5 C -0.15 -1.05 9.10 37.15 0.34 -0.71 16 6 C -0.12 -1.22 4.19 -27.88 -0.12 -1.34 16 7 C 0.52 7.16 7.35 -10.99 -0.08 7.08 16 8 O -0.52 -8.67 13.84 5.55 0.08 -8.59 16 9 N -0.61 -8.18 3.06 -163.25 -0.50 -8.68 16 10 C 0.11 1.30 5.59 -2.86 -0.02 1.28 16 11 C -0.06 -0.82 0.55 -154.10 -0.08 -0.91 16 12 C -0.12 -1.70 4.45 -25.24 -0.11 -1.81 16 13 C 0.14 1.93 3.08 -66.85 -0.21 1.72 16 14 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 15 C -0.16 -2.00 9.09 37.16 0.34 -1.67 16 16 C -0.12 -1.82 4.84 -27.01 -0.13 -1.95 16 17 C 0.15 2.94 6.25 -3.63 -0.02 2.91 16 18 N -0.60 -14.29 2.84 -172.40 -0.49 -14.78 16 19 C -0.35 -9.51 9.48 -15.06 -0.14 -9.65 16 20 H 0.05 1.48 7.94 -52.48 -0.42 1.07 16 21 C -0.02 -0.66 4.69 -17.43 -0.08 -0.75 16 22 N -0.92 -27.11 12.41 55.49 0.69 -26.42 16 23 Si 1.06 24.99 29.98 -169.99 -5.10 19.89 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.15 3.43 4.36 -3.85 -0.02 3.41 16 28 C -0.12 -2.15 4.84 -27.23 -0.13 -2.29 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.07 0.50 7.14 -51.92 -0.37 0.13 16 32 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.38 6.92 -51.93 -0.36 0.03 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.01 7.86 -51.93 -0.41 0.60 16 37 H 0.07 0.70 7.99 -51.93 -0.41 0.29 16 38 H 0.07 0.84 7.39 -51.93 -0.38 0.46 16 39 H 0.09 1.43 6.18 -51.92 -0.32 1.11 16 40 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.94 6.90 -51.93 -0.36 0.58 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.70 8.09 -51.92 -0.42 0.28 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.02 0.33 7.62 -51.93 -0.40 -0.06 16 47 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 48 H 0.27 7.99 6.71 -40.82 -0.27 7.72 16 49 H 0.08 2.04 6.29 -51.93 -0.33 1.72 16 50 H 0.02 0.40 6.30 -51.93 -0.33 0.07 16 51 H 0.05 0.92 7.82 -51.93 -0.41 0.52 16 52 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 400.58 15.07 6.04 6.04 Total: -1.00 -31.51 400.58 -10.36 -41.88 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -9.43 Total: 0.85 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 0.52 Total: -5.16 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.30 Total: -49.89 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.59 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.10 Total: 19.89 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -2.18 Total: -5.02 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.51 -10.36 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707126575.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.793 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds