Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81402 * 102.99937 * 2 1 4 4 H 1.09003 * 109.47061 * 55.00616 * 3 2 1 5 5 C 1.52994 * 109.47482 * 295.00253 * 3 2 1 6 6 C 1.53002 * 109.47269 * 174.99970 * 3 2 1 7 7 C 1.50704 * 109.47104 * 295.00379 * 6 3 2 8 8 O 1.21284 * 120.00173 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00161 * 179.97438 * 7 6 3 10 10 C 1.47581 * 125.62669 * 0.02562 * 9 7 6 11 11 C 1.54120 * 104.78078 * 203.29953 * 10 9 7 12 12 C 1.54385 * 102.47844 * 323.92000 * 11 10 9 13 13 C 1.47084 * 125.63095 * 179.97438 * 9 7 6 14 14 H 1.09008 * 109.87481 * 59.60835 * 13 9 7 15 15 C 1.52997 * 109.87739 * 298.46002 * 13 9 7 16 16 C 1.52114 * 110.69761 * 206.07116 * 11 10 9 17 17 C 1.53339 * 109.44386 * 176.91769 * 16 11 10 18 18 N 1.46931 * 108.68543 * 53.29940 * 17 16 11 19 19 C 1.36940 * 120.54807 * 125.63278 * 18 17 16 20 20 H 1.08004 * 120.00017 * 331.82734 * 19 18 17 21 21 C 1.38813 * 119.99810 * 151.82016 * 19 18 17 22 22 N 1.31616 * 119.99949 * 335.54864 * 21 19 18 23 23 Si 1.86802 * 119.99755 * 155.54079 * 21 19 18 24 24 H 1.48505 * 109.47054 * 179.97438 * 23 21 19 25 25 H 1.48492 * 109.47372 * 300.00576 * 23 21 19 26 26 H 1.48509 * 109.46823 * 60.00803 * 23 21 19 27 27 C 1.46930 * 118.90329 * 305.91144 * 18 17 16 28 28 C 1.52108 * 110.69596 * 81.78203 * 11 10 9 29 29 H 1.08997 * 109.47171 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46770 * 299.99693 * 1 2 3 31 31 H 1.09003 * 109.47322 * 59.99687 * 1 2 3 32 32 H 1.09010 * 109.47311 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47325 * 299.99708 * 5 3 2 34 34 H 1.08997 * 109.47164 * 59.99885 * 5 3 2 35 35 H 1.08993 * 109.47178 * 175.00645 * 6 3 2 36 36 H 1.08996 * 109.46743 * 55.00165 * 6 3 2 37 37 H 1.08993 * 110.37423 * 84.47079 * 10 9 7 38 38 H 1.09004 * 110.37498 * 322.12417 * 10 9 7 39 39 H 1.09010 * 110.73273 * 152.99032 * 12 11 10 40 40 H 1.09005 * 110.73602 * 276.29854 * 12 11 10 41 41 H 1.09000 * 109.47256 * 302.16108 * 15 13 9 42 42 H 1.08994 * 109.47374 * 62.16566 * 15 13 9 43 43 H 1.09000 * 109.46477 * 182.16244 * 15 13 9 44 44 H 1.09008 * 109.47251 * 56.92910 * 16 11 10 45 45 H 1.08999 * 109.48209 * 296.91561 * 16 11 10 46 46 H 1.08995 * 109.60229 * 293.54288 * 17 16 11 47 47 H 1.08994 * 109.73469 * 173.14067 * 17 16 11 48 48 H 0.96993 * 120.00586 * 354.24394 * 22 21 19 49 49 H 1.08995 * 109.59904 * 173.84448 * 27 18 17 50 50 H 1.08998 * 109.59868 * 294.32792 * 27 18 17 51 51 H 1.08998 * 109.47471 * 303.06981 * 28 11 10 52 52 H 1.09000 * 109.47439 * 63.08418 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7427 2.4017 -1.3072 6 6 3.7370 1.9413 0.1257 7 6 4.1919 1.4270 1.4673 8 8 3.3842 0.9664 2.2459 9 7 5.4966 1.4779 1.8013 10 6 6.5810 2.0098 0.9533 11 6 7.8598 1.3262 1.4755 12 6 7.5994 1.2479 2.9952 13 6 6.0746 1.0136 3.0717 14 1 5.8692 -0.0485 3.2060 15 6 5.4829 1.8120 4.2350 16 6 9.0833 2.1831 1.1880 17 6 10.3268 1.5144 1.7861 18 7 10.3997 0.1314 1.2953 19 6 11.5298 -0.3275 0.6728 20 1 12.1676 0.3593 0.1362 21 6 11.8557 -1.6756 0.7316 22 7 11.4103 -2.4176 1.7233 23 14 12.9262 -2.4365 -0.5967 24 1 13.1268 -3.8787 -0.3051 25 1 12.2609 -2.2854 -1.9156 26 1 14.2428 -1.7500 -0.6249 27 6 9.2377 -0.7491 1.4778 28 6 8.0024 -0.0690 0.8865 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.9876 3.4639 -1.3070 33 1 2.2353 1.9152 -2.1491 34 1 0.6635 2.2780 -1.3968 35 1 3.9901 2.9976 0.0367 36 1 4.2338 1.3805 -0.6659 37 1 6.6555 3.0913 1.0664 38 1 6.4097 1.7474 -0.0907 39 1 8.1412 0.4115 3.4370 40 1 7.8703 2.1848 3.4820 41 1 5.6763 2.8738 4.0825 42 1 4.4074 1.6417 4.2827 43 1 5.9436 1.4892 5.1686 44 1 8.9500 3.1684 1.6349 45 1 9.2093 2.2869 0.1103 46 1 10.2539 1.5130 2.8736 47 1 11.2203 2.0586 1.4803 48 1 10.9252 -2.0074 2.4561 49 1 9.4123 -1.6956 0.9663 50 1 9.0789 -0.9291 2.5410 51 1 7.1148 -0.6557 1.1229 52 1 8.1130 0.0030 -0.1955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707126575.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = -42.031020 kcal Electronic energy + Delta-G solvation = -29212.578275 eV Core-core repulsion = 25530.546286 eV Total energy + Delta-G solvation = -3682.031989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.78621 -39.93260 -37.73038 -35.57324 -34.95296 -32.92681 -32.50213 -31.71785 -30.06126 -28.82154 -28.28844 -27.17457 -25.70448 -24.21091 -23.65831 -22.63186 -22.17620 -20.05312 -19.77005 -18.91657 -18.06319 -17.65583 -17.07968 -16.64216 -16.22073 -16.01138 -15.63699 -15.45099 -15.24960 -15.09182 -14.97530 -14.76727 -14.55807 -14.32534 -14.15043 -14.01360 -13.63764 -13.57882 -13.38400 -13.28590 -13.15360 -13.00136 -12.74907 -12.69259 -12.46473 -12.36819 -12.20441 -12.17518 -12.08347 -11.97309 -11.89692 -11.65510 -11.41345 -11.21416 -11.04298 -10.77236 -10.64483 -10.43075 -9.61054 -8.87485 -8.49550 -8.20774 -5.37103 0.79982 1.58395 1.65893 1.69108 1.72121 1.84223 2.00332 2.67567 3.23301 3.36044 3.46071 3.59221 3.62273 3.75355 3.79117 4.10884 4.14729 4.17584 4.22721 4.25065 4.30226 4.32972 4.40451 4.42147 4.49077 4.51862 4.57667 4.63486 4.68652 4.72929 4.75702 4.78735 4.82714 4.85603 4.88014 4.95493 4.98353 5.05827 5.12609 5.21089 5.23491 5.24916 5.25477 5.29407 5.37123 5.44996 5.57598 5.87810 6.42114 6.59984 7.10728 7.23364 7.82021 8.27137 9.03402 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.002857 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.920977 B = 9798.464254 C =10524.391144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.320 6.320 3 C -0.027 4.027 4 H 0.083 0.917 5 C -0.141 4.141 6 C -0.116 4.116 7 C 0.517 3.483 8 O -0.559 6.559 9 N -0.613 5.613 10 C 0.114 3.886 11 C -0.055 4.055 12 C -0.110 4.110 13 C 0.138 3.862 14 H 0.043 0.957 15 C -0.148 4.148 16 C -0.103 4.103 17 C 0.142 3.858 18 N -0.615 5.615 19 C -0.350 4.350 20 H 0.052 0.948 21 C -0.079 4.079 22 N -0.946 5.946 23 Si 1.111 2.889 24 H -0.296 1.296 25 H -0.280 1.280 26 H -0.274 1.274 27 C 0.163 3.837 28 C -0.104 4.104 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.138 0.862 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.017 0.983 47 H 0.050 0.950 48 H 0.253 0.747 49 H 0.034 0.966 50 H 0.003 0.997 51 H 0.048 0.952 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.533 15.692 -4.518 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.095 6.095 3 C -0.156 4.156 4 H 0.102 0.898 5 C -0.200 4.200 6 C -0.156 4.156 7 C 0.307 3.693 8 O -0.437 6.437 9 N -0.347 5.347 10 C -0.008 4.008 11 C -0.056 4.056 12 C -0.148 4.148 13 C 0.035 3.965 14 H 0.061 0.939 15 C -0.206 4.206 16 C -0.142 4.142 17 C 0.018 3.982 18 N -0.340 5.340 19 C -0.480 4.480 20 H 0.070 0.930 21 C -0.275 4.275 22 N -0.589 5.589 23 Si 0.936 3.064 24 H -0.222 1.222 25 H -0.206 1.206 26 H -0.200 1.200 27 C 0.037 3.963 28 C -0.143 4.143 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.156 0.844 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.081 0.919 46 H 0.035 0.965 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.053 0.947 50 H 0.021 0.979 51 H 0.067 0.933 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.709 13.167 -4.669 23.349 hybrid contribution -1.120 1.532 1.058 2.172 sum -19.829 14.699 -3.611 24.945 Atomic orbital electron populations 1.23355 0.91760 1.06879 1.05468 1.87374 1.10365 1.13884 1.97891 1.22874 0.97610 0.92599 1.02546 0.89845 1.22071 1.01829 1.01762 0.94321 1.21600 0.94465 1.05286 0.94256 1.20737 0.80403 0.78484 0.89711 1.90716 1.52830 1.46700 1.53445 1.48696 1.06466 1.61811 1.17703 1.22463 0.84238 0.99061 0.95006 1.20893 0.94898 0.94806 0.94964 1.22692 0.92826 1.03057 0.96248 1.21460 0.93073 0.97260 0.84728 0.93863 1.21995 1.00870 1.00346 0.97341 1.21685 0.93028 0.98082 1.01380 1.21087 0.96944 0.84817 0.95399 1.44318 1.11618 1.09551 1.68531 1.20226 1.03606 0.95603 1.28608 0.93006 1.27131 1.02345 0.95699 1.02305 1.70897 1.39878 1.39553 1.08525 0.82901 0.74959 0.74953 0.73552 1.22202 1.20612 1.20021 1.20645 0.86573 0.93458 0.95614 1.21578 0.96851 0.96127 0.99760 0.87921 0.90528 0.88867 0.89418 0.91137 0.91640 0.84405 0.87712 0.88235 0.89583 0.92137 0.88629 0.91268 0.93276 0.91093 0.88771 0.91925 0.96475 0.93184 0.93692 0.94713 0.97916 0.93312 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.45 113.37 1.18 -0.52 16 2 S -0.32 -7.70 20.24 -56.49 -1.14 -8.84 16 3 C -0.03 -0.48 2.44 30.59 0.07 -0.41 16 4 H 0.08 1.62 7.96 -2.39 -0.02 1.60 16 5 C -0.14 -1.55 9.10 71.98 0.66 -0.89 16 6 C -0.12 -2.01 4.19 29.85 0.13 -1.88 16 7 C 0.52 13.33 7.35 87.66 0.64 13.98 16 8 O -0.56 -18.50 13.84 -3.04 -0.04 -18.54 16 9 N -0.61 -15.13 3.06 -788.81 -2.41 -17.54 16 10 C 0.11 2.36 5.59 86.55 0.48 2.84 16 11 C -0.05 -1.51 0.55 -51.92 -0.03 -1.54 16 12 C -0.11 -3.00 4.45 31.56 0.14 -2.86 16 13 C 0.14 3.77 3.08 45.37 0.14 3.91 16 14 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 15 C -0.15 -3.53 9.09 71.98 0.65 -2.87 16 16 C -0.10 -2.84 4.84 30.42 0.15 -2.69 16 17 C 0.14 5.44 6.25 86.41 0.54 5.98 16 18 N -0.62 -29.90 2.84 -699.35 -1.98 -31.89 16 19 C -0.35 -19.36 9.48 84.03 0.80 -18.56 16 20 H 0.05 2.84 7.94 -2.91 -0.02 2.82 16 21 C -0.08 -4.50 4.69 84.86 0.40 -4.10 16 22 N -0.95 -58.44 12.41 21.65 0.27 -58.17 16 23 Si 1.11 51.17 29.98 68.60 2.06 53.23 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 C 0.16 7.64 4.36 86.27 0.38 8.01 16 28 C -0.10 -3.76 4.84 30.27 0.15 -3.62 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.09 7.14 -2.39 -0.02 1.07 16 32 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.65 6.92 -2.39 -0.02 0.63 16 35 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.80 7.86 -2.39 -0.02 1.78 16 37 H 0.10 1.50 7.99 -2.39 -0.02 1.48 16 38 H 0.09 1.62 7.39 -2.39 -0.02 1.60 16 39 H 0.06 2.00 6.18 -2.38 -0.01 1.99 16 40 H 0.10 2.19 7.68 -2.38 -0.02 2.17 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.05 1.36 6.90 -2.39 -0.02 1.34 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 44 H 0.09 1.93 8.09 -2.38 -0.02 1.91 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.02 0.66 7.62 -2.39 -0.02 0.64 16 47 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 48 H 0.25 15.93 6.71 -92.71 -0.62 15.31 16 49 H 0.03 1.91 6.29 -2.39 -0.02 1.89 16 50 H 0.00 0.15 6.30 -2.39 -0.02 0.13 16 51 H 0.05 1.77 7.82 -2.39 -0.02 1.76 16 52 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -73.27 400.58 4.24 -69.03 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.02 Total: 17.92 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 6.48 Total: -5.21 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -4.13 Total: -107.60 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.04 Total: -18.54 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.06 Total: 53.23 kcal Atomic # 16 Polarization: -7.70 SS G_CDS: -1.14 Total: -8.84 kcal Total: -73.27 4.24 -69.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707126575.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.002 kcal (2) G-P(sol) polarization free energy of solvation -73.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds