Wall clock time and date at job start Sat Apr 11 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00014 * 2 1 4 4 C 1.52999 * 109.47223 * 125.00359 * 3 2 1 5 5 C 1.52999 * 109.47394 * 185.01059 * 4 3 2 6 6 H 1.09002 * 109.47044 * 55.52962 * 5 4 3 7 7 C 1.53004 * 109.47046 * 175.53008 * 5 4 3 8 8 N 1.46897 * 109.47004 * 295.53018 * 5 4 3 9 9 C 1.46848 * 110.99836 * 298.39875 * 8 5 4 10 10 C 1.53045 * 109.52015 * 174.16345 * 9 8 5 11 11 C 1.53118 * 109.27945 * 59.17799 * 10 9 8 12 12 C 1.53123 * 109.15958 * 302.34719 * 11 10 9 13 13 H 1.08993 * 109.50246 * 297.70983 * 12 11 10 14 14 C 1.52999 * 109.49807 * 177.59421 * 12 11 10 15 15 N 1.46497 * 109.47445 * 65.00353 * 14 12 11 16 16 C 1.34779 * 120.00244 * 179.97438 * 15 14 12 17 17 O 1.21281 * 120.00008 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99914 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.47162 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00060 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00391 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99828 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00102 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99871 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47157 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47110 * 119.99847 * 24 22 20 27 27 H 1.48500 * 109.47473 * 240.00113 * 24 22 20 28 28 C 1.46845 * 110.99698 * 174.19234 * 8 5 4 29 29 H 1.08005 * 119.99877 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00479 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99809 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.47485 * 4.99999 * 3 2 1 33 33 H 1.09001 * 109.47086 * 244.99819 * 3 2 1 34 34 H 1.09004 * 109.47417 * 65.00907 * 4 3 2 35 35 H 1.09001 * 109.46965 * 305.01427 * 4 3 2 36 36 H 1.09000 * 109.47090 * 300.00370 * 7 5 4 37 37 H 1.09002 * 109.47237 * 60.00071 * 7 5 4 38 38 H 1.08995 * 109.46807 * 180.02562 * 7 5 4 39 39 H 1.09001 * 109.46492 * 294.17563 * 9 8 5 40 40 H 1.09000 * 109.46128 * 54.14856 * 9 8 5 41 41 H 1.08995 * 109.50020 * 179.12351 * 10 9 8 42 42 H 1.09002 * 109.50019 * 299.20304 * 10 9 8 43 43 H 1.09004 * 109.52193 * 62.25076 * 11 10 9 44 44 H 1.08998 * 109.52331 * 182.37999 * 11 10 9 45 45 H 1.09005 * 109.46913 * 184.99905 * 14 12 11 46 46 H 1.09002 * 109.47480 * 304.99773 * 14 12 11 47 47 H 0.97003 * 119.99634 * 359.97438 * 15 14 12 48 48 H 1.08997 * 109.47593 * 300.00421 * 18 16 15 49 49 H 1.09009 * 109.46797 * 60.00394 * 18 16 15 50 50 H 0.97004 * 119.99676 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.46182 * 305.84989 * 28 8 5 52 52 H 1.08994 * 109.46713 * 65.82300 * 28 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7091 2.7046 1.2554 6 1 2.9466 3.4816 1.3107 7 6 4.5959 2.7707 2.5004 8 7 4.5322 2.9109 0.0563 9 6 5.5962 1.9026 -0.0314 10 6 6.3396 2.0578 -1.3601 11 6 6.9363 3.4654 -1.4442 12 6 5.8134 4.4966 -1.3017 13 1 5.1097 4.3847 -2.1265 14 6 6.4084 5.9060 -1.3245 15 7 7.0056 6.1629 -2.6373 16 6 7.5931 7.3492 -2.8900 17 8 7.6269 8.2044 -2.0307 18 6 8.2079 7.6132 -4.2403 19 16 8.9103 9.2811 -4.2679 20 6 9.5412 9.3203 -5.9126 21 1 9.4246 8.4610 -6.5563 22 6 10.1879 10.4557 -6.3809 23 7 10.3295 11.5032 -5.5965 24 14 10.8573 10.4970 -8.1243 25 1 10.5705 9.2037 -8.7955 26 1 10.2081 11.5998 -8.8778 27 1 12.3249 10.7206 -8.0860 28 6 5.0854 4.2708 0.0254 29 1 -0.5400 0.9354 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.7938 0.5622 1.0464 35 1 2.4884 1.1466 2.1059 36 1 3.9852 2.6176 3.3901 37 1 5.3584 1.9937 2.4450 38 1 5.0757 3.7480 2.5532 39 1 6.2951 2.0394 0.7939 40 1 5.1580 0.9062 0.0254 41 1 7.1392 1.3194 -1.4181 42 1 5.6442 1.9069 -2.1858 43 1 7.6608 3.6025 -0.6413 44 1 7.4307 3.5946 -2.4070 45 1 5.6213 6.6358 -1.1344 46 1 7.1749 5.9893 -0.5540 47 1 6.9782 5.4790 -3.3247 48 1 8.9953 6.8837 -4.4300 49 1 7.4416 7.5293 -5.0111 50 1 10.7819 12.2964 -5.9237 51 1 4.2761 4.9944 0.1233 52 1 5.7866 4.3965 0.8502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713209731.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:03 Heat of formation + Delta-G solvation = -39.007505 kcal Electronic energy + Delta-G solvation = -26935.831199 eV Core-core repulsion = 23253.930319 eV Total energy + Delta-G solvation = -3681.900880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.23692 -39.02762 -36.89308 -35.18933 -33.81283 -32.41884 -31.69396 -31.00685 -29.16482 -29.09102 -25.88560 -25.40066 -24.96994 -23.51035 -22.60793 -20.47734 -20.27031 -20.03612 -19.46525 -17.83077 -16.85646 -16.27297 -15.92882 -15.60042 -15.36904 -15.17666 -14.97726 -14.79569 -14.54140 -14.30144 -14.26499 -13.91914 -13.62572 -13.49354 -13.11362 -12.98683 -12.69707 -12.61303 -12.51319 -12.29553 -12.19824 -11.97802 -11.72971 -11.63271 -11.30277 -11.08324 -11.06339 -11.00724 -10.93910 -10.88566 -10.75731 -10.56495 -10.50482 -9.79186 -9.66996 -9.37271 -9.06774 -8.83835 -8.57071 -8.21490 -6.48539 -6.20808 -3.91034 1.94154 3.04399 3.13861 3.22255 3.28508 3.32811 3.49988 3.80913 4.21413 4.23744 4.41551 4.52426 4.54126 4.66600 4.72390 4.76682 4.88325 4.96823 4.98690 5.06691 5.08125 5.14473 5.18539 5.21506 5.24131 5.34185 5.36691 5.40076 5.43291 5.45628 5.52456 5.58773 5.61157 5.66272 5.72692 5.74711 5.81540 5.86061 5.87304 5.92483 5.95684 6.01159 6.15686 6.16729 6.29282 6.43957 6.64977 6.78587 6.79470 7.60963 7.75022 8.36507 8.65374 9.24710 10.86692 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023659 B = 0.001665 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.214040 B =16814.502481 C =17183.493273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.087 4.087 4 C -0.107 4.107 5 C 0.080 3.920 6 H 0.083 0.917 7 C -0.189 4.189 8 N -0.526 5.526 9 C 0.049 3.951 10 C -0.116 4.116 11 C -0.118 4.118 12 C -0.094 4.094 13 H 0.086 0.914 14 C 0.127 3.873 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.063 3.937 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.397 0.603 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.268 0.732 51 H 0.077 0.923 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.564 -25.708 13.690 33.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.170 4.170 3 C -0.124 4.124 4 C -0.144 4.144 5 C -0.029 4.029 6 H 0.102 0.898 7 C -0.248 4.248 8 N -0.250 5.250 9 C -0.079 4.079 10 C -0.154 4.154 11 C -0.155 4.155 12 C -0.113 4.113 13 H 0.104 0.896 14 C 0.002 3.998 15 N -0.391 5.391 16 C 0.317 3.683 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.066 4.066 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.232 0.768 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.077 0.923 51 H 0.095 0.905 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.746 -24.144 14.751 32.380 hybrid contribution 0.909 -1.223 -1.675 2.264 sum -14.837 -25.366 13.076 32.165 Atomic orbital electron populations 1.23841 0.96068 1.01676 1.02214 1.23062 0.96041 0.98844 0.99043 1.20674 0.97703 0.94440 0.99579 1.21629 0.98164 0.96203 0.98430 1.21759 0.95236 0.98214 0.87647 0.89837 1.22484 1.00937 1.02252 0.99082 1.62107 1.22275 1.02608 1.38037 1.22188 0.92619 0.96004 0.97096 1.21582 0.99309 0.96831 0.97677 1.21660 0.97273 0.94210 1.02379 1.21391 0.97354 0.93718 0.98832 0.89593 1.21232 0.97647 0.95232 0.85641 1.45978 1.60613 1.17126 1.15421 1.20297 0.77330 0.81141 0.89522 1.90699 1.56944 1.44401 1.47298 1.23529 1.03274 1.07493 0.96087 1.85396 1.71927 1.07276 1.18861 1.22917 1.42998 1.03730 0.98679 0.90875 1.24993 0.95408 0.94626 0.98569 1.70031 1.40409 1.04006 1.35851 0.86118 0.78589 0.78232 0.82557 1.19623 1.20570 1.20575 1.22005 0.98196 0.90188 0.96179 0.88666 0.88848 0.87787 0.91782 0.89813 0.91650 0.91694 0.92071 0.92298 0.92252 0.94636 0.90521 0.91606 0.91082 0.91985 0.91484 0.91602 0.91811 0.76849 0.89285 0.89247 0.92253 0.90453 0.94237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 14.32 29.01 0.42 -0.79 16 2 C -0.15 -0.93 9.52 -36.03 -0.34 -1.27 16 3 C -0.09 -0.53 5.48 -27.88 -0.15 -0.69 16 4 C -0.11 -0.59 4.49 -26.73 -0.12 -0.71 16 5 C 0.08 0.49 2.35 -67.71 -0.16 0.33 16 6 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 7 C -0.19 -1.13 8.50 37.16 0.32 -0.81 16 8 N -0.53 -3.64 4.16 -226.69 -0.94 -4.58 16 9 C 0.05 0.32 4.63 -3.83 -0.02 0.30 16 10 C -0.12 -0.79 6.09 -26.65 -0.16 -0.95 16 11 C -0.12 -0.93 5.13 -26.61 -0.14 -1.06 16 12 C -0.09 -0.79 2.39 -90.54 -0.22 -1.00 16 13 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 14 C 0.13 1.46 5.07 -4.04 -0.02 1.44 16 15 N -0.74 -9.79 5.31 -60.29 -0.32 -10.11 16 16 C 0.53 9.98 7.85 -10.99 -0.09 9.90 16 17 O -0.52 -11.94 15.86 5.56 0.09 -11.85 16 18 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 24 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.06 0.49 4.33 -3.84 -0.02 0.47 16 29 H 0.10 0.55 7.84 -52.48 -0.41 0.14 16 30 H 0.09 0.48 8.06 -52.48 -0.42 0.06 16 31 H 0.10 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.06 0.42 7.79 -51.93 -0.40 0.01 16 33 H 0.08 0.60 7.88 -51.93 -0.41 0.19 16 34 H 0.06 0.36 6.10 -51.93 -0.32 0.04 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.36 6.51 -51.93 -0.34 0.02 16 38 H 0.06 0.40 6.68 -51.93 -0.35 0.05 16 39 H 0.04 0.25 6.61 -51.93 -0.34 -0.09 16 40 H 0.08 0.46 5.97 -51.93 -0.31 0.15 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.54 7.26 -51.93 -0.38 0.16 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.40 4.18 7.67 -40.82 -0.31 3.87 16 48 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 49 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 50 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 51 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 52 H 0.04 0.32 6.75 -51.93 -0.35 -0.03 16 LS Contribution 418.11 15.07 6.30 6.30 Total: -1.00 -33.41 418.11 -11.03 -44.44 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -9.38 Total: -0.46 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -0.28 Total: -10.77 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.53 Total: -40.23 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.41 -11.03 -44.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713209731.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.434 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds