Wall clock time and date at job start Sat Apr 11 2020 06:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00014 * 2 1 4 4 C 1.52999 * 109.47223 * 125.00359 * 3 2 1 5 5 C 1.52999 * 109.47394 * 185.01059 * 4 3 2 6 6 H 1.09002 * 109.47044 * 55.52962 * 5 4 3 7 7 C 1.53004 * 109.47046 * 175.53008 * 5 4 3 8 8 N 1.46897 * 109.47004 * 295.53018 * 5 4 3 9 9 C 1.46848 * 110.99836 * 298.39875 * 8 5 4 10 10 C 1.53045 * 109.52015 * 174.16345 * 9 8 5 11 11 C 1.53118 * 109.27945 * 59.17799 * 10 9 8 12 12 C 1.53123 * 109.15958 * 302.34719 * 11 10 9 13 13 H 1.08993 * 109.50246 * 297.70983 * 12 11 10 14 14 C 1.52999 * 109.49807 * 177.59421 * 12 11 10 15 15 N 1.46497 * 109.47445 * 65.00353 * 14 12 11 16 16 C 1.34779 * 120.00244 * 179.97438 * 15 14 12 17 17 O 1.21281 * 120.00008 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99914 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.47162 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00060 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00391 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99828 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00102 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99871 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47157 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47110 * 119.99847 * 24 22 20 27 27 H 1.48500 * 109.47473 * 240.00113 * 24 22 20 28 28 C 1.46845 * 110.99698 * 174.19234 * 8 5 4 29 29 H 1.08005 * 119.99877 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00479 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99809 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.47485 * 4.99999 * 3 2 1 33 33 H 1.09001 * 109.47086 * 244.99819 * 3 2 1 34 34 H 1.09004 * 109.47417 * 65.00907 * 4 3 2 35 35 H 1.09001 * 109.46965 * 305.01427 * 4 3 2 36 36 H 1.09000 * 109.47090 * 300.00370 * 7 5 4 37 37 H 1.09002 * 109.47237 * 60.00071 * 7 5 4 38 38 H 1.08995 * 109.46807 * 180.02562 * 7 5 4 39 39 H 1.09001 * 109.46492 * 294.17563 * 9 8 5 40 40 H 1.09000 * 109.46128 * 54.14856 * 9 8 5 41 41 H 1.08995 * 109.50020 * 179.12351 * 10 9 8 42 42 H 1.09002 * 109.50019 * 299.20304 * 10 9 8 43 43 H 1.09004 * 109.52193 * 62.25076 * 11 10 9 44 44 H 1.08998 * 109.52331 * 182.37999 * 11 10 9 45 45 H 1.09005 * 109.46913 * 184.99905 * 14 12 11 46 46 H 1.09002 * 109.47480 * 304.99773 * 14 12 11 47 47 H 0.97003 * 119.99634 * 359.97438 * 15 14 12 48 48 H 1.08997 * 109.47593 * 300.00421 * 18 16 15 49 49 H 1.09009 * 109.46797 * 60.00394 * 18 16 15 50 50 H 0.97004 * 119.99676 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.46182 * 305.84989 * 28 8 5 52 52 H 1.08994 * 109.46713 * 65.82300 * 28 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7091 2.7046 1.2554 6 1 2.9466 3.4816 1.3107 7 6 4.5959 2.7707 2.5004 8 7 4.5322 2.9109 0.0563 9 6 5.5962 1.9026 -0.0314 10 6 6.3396 2.0578 -1.3601 11 6 6.9363 3.4654 -1.4442 12 6 5.8134 4.4966 -1.3017 13 1 5.1097 4.3847 -2.1265 14 6 6.4084 5.9060 -1.3245 15 7 7.0056 6.1629 -2.6373 16 6 7.5931 7.3492 -2.8900 17 8 7.6269 8.2044 -2.0307 18 6 8.2079 7.6132 -4.2403 19 16 8.9103 9.2811 -4.2679 20 6 9.5412 9.3203 -5.9126 21 1 9.4246 8.4610 -6.5563 22 6 10.1879 10.4557 -6.3809 23 7 10.3295 11.5032 -5.5965 24 14 10.8573 10.4970 -8.1243 25 1 10.5705 9.2037 -8.7955 26 1 10.2081 11.5998 -8.8778 27 1 12.3249 10.7206 -8.0860 28 6 5.0854 4.2708 0.0254 29 1 -0.5400 0.9354 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.7938 0.5622 1.0464 35 1 2.4884 1.1466 2.1059 36 1 3.9852 2.6176 3.3901 37 1 5.3584 1.9937 2.4450 38 1 5.0757 3.7480 2.5532 39 1 6.2951 2.0394 0.7939 40 1 5.1580 0.9062 0.0254 41 1 7.1392 1.3194 -1.4181 42 1 5.6442 1.9069 -2.1858 43 1 7.6608 3.6025 -0.6413 44 1 7.4307 3.5946 -2.4070 45 1 5.6213 6.6358 -1.1344 46 1 7.1749 5.9893 -0.5540 47 1 6.9782 5.4790 -3.3247 48 1 8.9953 6.8837 -4.4300 49 1 7.4416 7.5293 -5.0111 50 1 10.7819 12.2964 -5.9237 51 1 4.2761 4.9944 0.1233 52 1 5.7866 4.3965 0.8502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713209731.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:02 Heat of formation + Delta-G solvation = -59.573599 kcal Electronic energy + Delta-G solvation = -26936.723012 eV Core-core repulsion = 23253.930319 eV Total energy + Delta-G solvation = -3682.792693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.01438 -40.28533 -37.61833 -35.96511 -34.67659 -34.57520 -32.57369 -31.66308 -30.51687 -29.60367 -27.71257 -26.63715 -25.57247 -24.07403 -23.27996 -21.75169 -21.08074 -20.51752 -20.04567 -19.80431 -17.84086 -17.48170 -17.02522 -16.87578 -16.65304 -16.11164 -16.01099 -15.69710 -15.52907 -15.32639 -14.96110 -14.85498 -14.67067 -14.49608 -14.31251 -13.95976 -13.76719 -13.52575 -13.20554 -13.15544 -13.04731 -12.96021 -12.89372 -12.72088 -12.58353 -12.46069 -12.20584 -11.85074 -11.71989 -11.64159 -11.57423 -11.39866 -11.20395 -11.15581 -11.12460 -10.91617 -10.26834 -10.13630 -10.10138 -9.13268 -8.66461 -8.34553 -6.12585 1.27624 1.41800 1.47676 1.48347 1.58891 1.62316 2.25672 2.29770 2.96064 2.99775 3.32963 3.71129 3.73708 3.86106 3.93251 4.02068 4.13824 4.22278 4.25930 4.29800 4.30435 4.39859 4.43422 4.51021 4.51739 4.55546 4.60236 4.64169 4.67391 4.76643 4.84161 4.86510 4.90629 4.91973 5.02744 5.06899 5.09736 5.19414 5.21203 5.23706 5.30644 5.39161 5.42354 5.42945 5.48618 5.54253 5.83803 5.98205 6.20381 6.20441 6.25184 6.51555 7.06944 7.25375 8.74974 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023659 B = 0.001665 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.214040 B =16814.502481 C =17183.493273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.082 4.082 4 C -0.099 4.099 5 C 0.081 3.919 6 H 0.080 0.920 7 C -0.185 4.185 8 N -0.527 5.527 9 C 0.049 3.951 10 C -0.111 4.111 11 C -0.117 4.117 12 C -0.079 4.079 13 H 0.091 0.909 14 C 0.129 3.871 15 N -0.709 5.709 16 C 0.533 3.467 17 O -0.568 6.568 18 C -0.129 4.129 19 S -0.153 6.153 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.274 1.274 28 C 0.065 3.935 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.032 0.968 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.415 0.585 48 H 0.110 0.890 49 H 0.110 0.890 50 H 0.271 0.729 51 H 0.076 0.924 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.069 -28.331 12.555 34.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.176 4.176 3 C -0.119 4.119 4 C -0.137 4.137 5 C -0.028 4.028 6 H 0.098 0.902 7 C -0.243 4.243 8 N -0.251 5.251 9 C -0.078 4.078 10 C -0.149 4.149 11 C -0.155 4.155 12 C -0.099 4.099 13 H 0.109 0.891 14 C 0.004 3.996 15 N -0.363 5.363 16 C 0.319 3.681 17 O -0.447 6.447 18 C -0.280 4.280 19 S 0.074 5.926 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.064 4.064 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.252 0.748 48 H 0.128 0.872 49 H 0.128 0.872 50 H 0.080 0.920 51 H 0.094 0.906 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.278 -26.834 13.612 34.210 hybrid contribution 0.982 -0.508 -1.234 1.657 sum -15.296 -27.342 12.378 33.686 Atomic orbital electron populations 1.23971 0.96232 1.02102 1.02048 1.23149 0.96167 0.99059 0.99179 1.20605 0.97571 0.94368 0.99365 1.21565 0.98032 0.95742 0.98362 1.21768 0.95047 0.98555 0.87396 0.90205 1.22438 1.00908 1.01693 0.99296 1.62115 1.22332 1.02104 1.38531 1.22211 0.92460 0.96270 0.96904 1.21548 0.99534 0.96116 0.97701 1.21657 0.96839 0.94792 1.02177 1.21260 0.97496 0.91660 0.99437 0.89089 1.21336 0.97037 0.97108 0.84092 1.45720 1.58448 1.15549 1.16614 1.20070 0.77537 0.82115 0.88423 1.90689 1.59182 1.46368 1.48418 1.23371 1.04081 1.02764 0.97829 1.85584 1.73223 1.13885 1.19885 1.23248 1.43110 1.04361 0.98676 0.89866 1.26131 0.95478 0.93997 1.03535 1.70193 1.41424 1.04860 1.38332 0.84898 0.77795 0.78888 0.76306 1.18002 1.19946 1.19922 1.21937 0.98009 0.90912 0.95521 0.88733 0.88064 0.87078 0.92353 0.90657 0.91275 0.91270 0.91394 0.92268 0.93179 0.95023 0.89608 0.90660 0.91006 0.92755 0.91275 0.92413 0.92799 0.74750 0.87188 0.87204 0.92001 0.90583 0.94729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.23 14.32 67.78 0.97 -1.26 16 2 C -0.16 -1.70 9.52 25.65 0.24 -1.45 16 3 C -0.08 -0.90 5.48 29.85 0.16 -0.73 16 4 C -0.10 -0.93 4.49 30.59 0.14 -0.80 16 5 C 0.08 0.88 2.35 44.92 0.11 0.99 16 6 H 0.08 0.95 8.07 -2.39 -0.02 0.93 16 7 C -0.18 -1.99 8.50 71.98 0.61 -1.38 16 8 N -0.53 -6.50 4.16 -871.10 -3.62 -10.12 16 9 C 0.05 0.55 4.63 86.33 0.40 0.95 16 10 C -0.11 -1.25 6.09 30.65 0.19 -1.07 16 11 C -0.12 -1.62 5.13 30.67 0.16 -1.46 16 12 C -0.08 -1.21 2.39 -10.74 -0.03 -1.23 16 13 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 14 C 0.13 2.85 5.07 86.38 0.44 3.29 16 15 N -0.71 -17.80 5.31 -463.06 -2.46 -20.25 16 16 C 0.53 19.78 7.85 87.66 0.69 20.47 16 17 O -0.57 -26.70 15.86 -3.03 -0.05 -26.75 16 18 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 19 S -0.15 -8.55 20.57 -56.49 -1.16 -9.72 16 20 C -0.55 -31.31 9.50 67.95 0.65 -30.67 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 22 C 0.01 0.76 5.49 84.86 0.47 1.22 16 23 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 24 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 28 C 0.06 0.94 4.33 86.33 0.37 1.31 16 29 H 0.09 1.00 7.84 -2.91 -0.02 0.98 16 30 H 0.10 0.90 8.06 -2.91 -0.02 0.88 16 31 H 0.11 1.02 8.06 -2.91 -0.02 1.00 16 32 H 0.06 0.70 7.79 -2.39 -0.02 0.68 16 33 H 0.08 0.96 7.88 -2.39 -0.02 0.95 16 34 H 0.07 0.61 6.10 -2.38 -0.01 0.60 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.64 6.51 -2.39 -0.02 0.62 16 38 H 0.05 0.64 6.68 -2.39 -0.02 0.62 16 39 H 0.03 0.39 6.61 -2.39 -0.02 0.38 16 40 H 0.09 0.84 5.97 -2.39 -0.01 0.82 16 41 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.07 0.93 7.26 -2.39 -0.02 0.92 16 45 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.42 7.63 7.67 -92.71 -0.71 6.92 16 48 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 49 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 50 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 51 H 0.08 1.13 8.07 -2.39 -0.02 1.11 16 52 H 0.03 0.54 6.75 -2.39 -0.02 0.53 16 Total: -1.00 -73.89 418.11 1.19 -72.70 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.17 Total: 20.89 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 6.00 Total: -16.51 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -5.79 Total: -86.33 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.05 Total: -26.75 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.72 kcal Total: -73.89 1.19 -72.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713209731.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.131 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds