Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46553 * 2 1 4 4 C 1.53001 * 109.47107 * 119.99664 * 2 1 3 5 5 C 1.52996 * 109.46996 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47236 * 300.00140 * 5 4 2 7 7 C 1.53001 * 109.47242 * 60.00011 * 6 5 4 8 8 C 1.52996 * 109.46892 * 239.99627 * 2 1 3 9 9 C 1.53001 * 109.47214 * 60.00103 * 8 2 1 10 10 N 1.46901 * 109.47212 * 179.50009 * 9 8 2 11 11 C 1.46905 * 110.99889 * 190.74866 * 10 9 8 12 12 C 1.52998 * 109.47084 * 180.02562 * 11 10 9 13 13 C 1.52994 * 117.50106 * 243.62289 * 12 11 10 14 14 C 1.53002 * 117.49961 * 174.99589 * 12 11 10 15 15 N 1.46496 * 109.47357 * 299.99840 * 8 2 1 16 16 C 1.34777 * 120.00091 * 191.30436 * 15 8 2 17 17 O 1.21286 * 119.99757 * 358.27225 * 16 15 8 18 18 C 1.50697 * 120.00165 * 178.27115 * 16 15 8 19 19 S 1.81007 * 109.47232 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99821 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00105 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99700 * 180.02562 * 20 19 18 23 23 N 1.31635 * 120.00050 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00177 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47345 * 89.99645 * 24 22 20 26 26 H 1.48504 * 109.47100 * 209.99943 * 24 22 20 27 27 H 1.48504 * 109.47046 * 329.99676 * 24 22 20 28 28 H 1.09004 * 109.46912 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47001 * 300.00197 * 1 2 3 30 30 H 1.08996 * 109.47014 * 60.00310 * 1 2 3 31 31 H 1.09003 * 109.47343 * 300.00439 * 4 2 1 32 32 H 1.09002 * 109.46658 * 60.00132 * 4 2 1 33 33 H 1.08997 * 109.47122 * 59.99845 * 5 4 2 34 34 H 1.09006 * 109.47025 * 180.02562 * 5 4 2 35 35 H 1.08997 * 109.47222 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47150 * 299.99872 * 6 5 4 37 37 H 1.08998 * 109.47304 * 180.02562 * 7 6 5 38 38 H 1.09004 * 109.47161 * 59.99868 * 7 6 5 39 39 H 1.08997 * 109.47014 * 299.50209 * 9 8 2 40 40 H 1.09003 * 109.47396 * 59.50246 * 9 8 2 41 41 H 1.00894 * 110.99898 * 66.79571 * 10 9 8 42 42 H 1.08996 * 109.46889 * 299.99613 * 11 10 9 43 43 H 1.08996 * 109.47382 * 59.99773 * 11 10 9 44 44 H 1.09009 * 115.54856 * 29.32743 * 12 11 10 45 45 H 1.09002 * 117.49754 * 359.97438 * 13 12 11 46 46 H 1.08994 * 117.50387 * 145.01627 * 13 12 11 47 47 H 1.09003 * 117.49933 * 214.97848 * 14 12 11 48 48 H 1.08993 * 117.49604 * 0.02562 * 14 12 11 49 49 H 0.97001 * 120.00090 * 11.58322 * 15 8 2 50 50 H 1.08996 * 109.47195 * 300.00154 * 18 16 15 51 51 H 1.09005 * 109.47070 * 60.00396 * 18 16 15 52 52 H 0.97001 * 119.99834 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5701 -0.7217 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7222 -1.2496 8 6 2.0400 -0.7213 -1.2492 9 6 1.5300 -0.0001 -2.4985 10 7 2.0295 -0.6857 -3.6978 11 6 1.7779 0.1137 -4.9044 12 6 2.3101 -0.6314 -6.1300 13 6 3.4502 0.0217 -6.9139 14 6 2.0391 -0.0154 -7.5041 15 7 1.5517 -2.1025 -1.2491 16 6 2.0534 -2.9947 -2.1259 17 8 2.8865 -2.6464 -2.9357 18 6 1.5794 -4.4249 -2.1001 19 16 2.4337 -5.3671 -3.3881 20 6 1.7090 -6.9536 -3.1381 21 1 0.9705 -7.0939 -2.3627 22 6 2.0871 -8.0230 -3.9380 23 7 1.5454 -9.2082 -3.7516 24 14 3.3649 -7.7806 -5.2789 25 1 4.7186 -8.0373 -4.7250 26 1 3.0986 -8.7255 -6.3931 27 1 3.2933 -6.3862 -5.7846 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6767 -0.2074 2.1393 32 1 1.6767 -1.7489 1.2493 33 1 3.9337 0.3058 1.2486 34 1 3.9334 -1.2359 2.1388 35 1 5.1695 -1.4442 -0.0003 36 1 3.7159 -2.4710 0.0000 37 1 3.9321 -1.2366 -2.1395 38 1 3.9332 0.3054 -1.2498 39 1 0.4401 -0.0078 -2.5029 40 1 1.8861 1.0301 -2.4941 41 1 1.6249 -1.6061 -3.7831 42 1 0.7058 0.2761 -5.0156 43 1 2.2836 1.0751 -4.8152 44 1 2.3078 -1.7190 -6.0567 45 1 3.8208 0.9825 -6.5566 46 1 4.1983 -0.6361 -7.3563 47 1 1.8588 -0.6977 -8.3349 48 1 1.4820 0.9209 -7.5348 49 1 0.8644 -2.3739 -0.6207 50 1 1.7971 -4.8623 -1.1257 51 1 0.5047 -4.4548 -2.2799 52 1 1.8100 -9.9557 -4.3104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714179921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -24.604083 kcal Electronic energy + Delta-G solvation = -29379.383614 eV Core-core repulsion = 25698.107313 eV Total energy + Delta-G solvation = -3681.276301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91478 -38.96826 -38.59590 -35.88004 -34.66788 -34.52761 -33.39191 -31.88995 -29.91729 -28.09767 -27.82814 -26.70281 -24.73532 -23.21147 -22.82040 -21.99508 -21.68802 -21.31027 -19.91584 -19.84278 -17.92353 -17.37480 -17.09183 -16.79223 -16.58118 -15.92080 -15.84717 -15.72898 -15.26277 -15.12738 -14.94755 -14.89811 -14.63275 -14.46852 -14.01541 -13.82999 -13.64185 -13.31772 -13.19586 -13.04808 -12.98087 -12.86603 -12.79600 -12.55455 -12.37092 -12.30820 -12.26179 -12.03207 -11.86023 -11.73356 -11.42073 -11.23907 -11.16140 -11.07736 -10.93596 -10.83797 -10.47727 -10.14299 -9.80198 -8.94487 -8.90936 -8.50770 -6.18747 1.03369 1.31167 1.47572 1.59948 1.78285 2.24669 2.39876 2.76823 2.87951 2.89904 3.32620 3.77239 3.82158 3.85924 3.90984 4.05517 4.06828 4.14875 4.23437 4.28345 4.30770 4.46731 4.52138 4.54922 4.55800 4.59936 4.63764 4.69372 4.73449 4.75146 4.77746 4.83470 4.88869 4.94580 5.03365 5.03458 5.14633 5.22024 5.26686 5.31448 5.36202 5.36763 5.39041 5.49258 5.55231 5.69201 5.71543 5.89219 6.12305 6.34337 6.57191 6.74295 6.95087 7.46185 8.62039 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008544 B = 0.004356 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3276.312573 B = 6426.602479 C = 8687.907658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 H 0.095 0.905 4 C -0.111 4.111 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.124 4.124 8 C 0.196 3.804 9 C 0.053 3.947 10 N -0.676 5.676 11 C 0.096 3.904 12 C -0.161 4.161 13 C -0.172 4.172 14 C -0.171 4.171 15 N -0.708 5.708 16 C 0.524 3.476 17 O -0.497 6.497 18 C -0.115 4.115 19 S -0.158 6.158 20 C -0.531 4.531 21 H 0.057 0.943 22 C 0.046 3.954 23 N -0.920 5.920 24 Si 0.915 3.085 25 H -0.264 1.264 26 H -0.262 1.262 27 H -0.235 1.235 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.039 0.961 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.083 0.917 41 H 0.340 0.660 42 H 0.025 0.975 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.107 0.893 49 H 0.405 0.595 50 H 0.099 0.901 51 H 0.102 0.898 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 25.714 6.774 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.102 4.102 3 H 0.113 0.887 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.154 4.154 7 C -0.162 4.162 8 C 0.110 3.890 9 C -0.077 4.077 10 N -0.313 5.313 11 C -0.033 4.033 12 C -0.180 4.180 13 C -0.209 4.209 14 C -0.209 4.209 15 N -0.364 5.364 16 C 0.308 3.692 17 O -0.371 6.371 18 C -0.267 4.267 19 S 0.068 5.932 20 C -0.678 4.678 21 H 0.075 0.925 22 C -0.159 4.159 23 N -0.558 5.558 24 Si 0.737 3.263 25 H -0.189 1.189 26 H -0.186 1.186 27 H -0.159 1.159 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.101 0.899 41 H 0.165 0.835 42 H 0.043 0.957 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.121 0.879 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.126 0.874 49 H 0.242 0.758 50 H 0.117 0.883 51 H 0.120 0.880 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.560 26.317 5.472 26.886 hybrid contribution -1.791 -1.763 0.535 2.569 sum -1.231 24.554 6.007 25.309 Atomic orbital electron populations 1.21921 0.94010 1.02126 1.02750 1.21336 0.96387 1.00033 0.92479 0.88672 1.21575 0.95109 1.00642 0.97486 1.21512 0.96075 1.00722 0.96807 1.21456 0.99485 0.98897 0.95515 1.21837 0.94335 1.00802 0.99193 1.20400 0.94038 0.80149 0.94426 1.22469 0.96959 0.98312 0.89969 1.60907 1.63863 1.05423 1.01144 1.21454 0.97033 0.96231 0.88615 1.22170 1.04504 0.98583 0.92713 1.22970 0.91666 1.02422 1.03868 1.23024 0.99154 1.03052 0.95637 1.45946 1.42766 1.10088 1.37552 1.19740 0.82193 0.85919 0.81305 1.90729 1.31106 1.78236 1.37030 1.23328 1.04331 0.95909 1.03093 1.84593 1.57818 1.05397 1.45379 1.22539 1.27987 0.95074 1.22229 0.92470 1.25548 0.97650 0.93835 0.98862 1.70028 1.43775 1.01277 1.40751 0.85865 0.79717 0.80960 0.79782 1.18890 1.18605 1.15865 0.92807 0.90938 0.92210 0.90085 0.92444 0.91192 0.92102 0.93280 0.94235 0.90110 0.91600 0.94650 0.89880 0.83546 0.95706 0.90793 0.90442 0.87920 0.89702 0.88881 0.87419 0.75774 0.88291 0.88019 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.67 71.99 0.62 -1.04 16 2 C -0.08 -1.09 2.01 -10.79 -0.02 -1.11 16 3 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.11 -1.48 5.04 30.59 0.15 -1.33 16 5 C -0.11 -1.84 5.92 30.59 0.18 -1.66 16 6 C -0.12 -2.64 5.75 30.59 0.18 -2.46 16 7 C -0.12 -2.93 4.19 30.58 0.13 -2.81 16 8 C 0.20 3.80 0.35 3.59 0.00 3.80 16 9 C 0.05 1.08 4.49 86.30 0.39 1.47 16 10 N -0.68 -18.15 4.07 -513.89 -2.09 -20.24 16 11 C 0.10 2.29 5.93 86.30 0.51 2.80 16 12 C -0.16 -4.28 5.95 -10.80 -0.06 -4.35 16 13 C -0.17 -3.98 10.18 30.59 0.31 -3.67 16 14 C -0.17 -3.63 10.25 30.60 0.31 -3.31 16 15 N -0.71 -15.76 3.78 -423.01 -1.60 -17.36 16 16 C 0.52 16.52 5.77 87.66 0.51 17.02 16 17 O -0.50 -18.49 9.79 -3.05 -0.03 -18.52 16 18 C -0.12 -4.26 6.16 71.23 0.44 -3.82 16 19 S -0.16 -7.81 18.55 -56.49 -1.05 -8.85 16 20 C -0.53 -30.93 10.04 67.95 0.68 -30.25 16 21 H 0.06 3.55 8.03 -2.91 -0.02 3.52 16 22 C 0.05 2.72 5.50 84.86 0.47 3.19 16 23 N -0.92 -56.50 13.97 21.65 0.30 -56.20 16 24 Si 0.91 45.30 27.74 68.60 1.90 47.21 16 25 H -0.26 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 27 H -0.23 -11.53 6.74 99.48 0.67 -10.86 16 28 H 0.05 0.62 6.65 -2.38 -0.02 0.61 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.68 6.44 -2.39 -0.02 0.67 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.86 7.11 -2.39 -0.02 0.84 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.04 1.06 7.19 -2.38 -0.02 1.05 16 37 H 0.08 2.62 5.16 -2.39 -0.01 2.61 16 38 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.04 0.67 6.46 -2.39 -0.02 0.66 16 40 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 41 H 0.34 10.84 5.48 -89.70 -0.49 10.35 16 42 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 1.59 7.85 -2.39 -0.02 1.57 16 44 H 0.08 2.60 8.13 -2.38 -0.02 2.58 16 45 H 0.10 2.08 8.03 -2.39 -0.02 2.06 16 46 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.41 7.34 6.27 -92.71 -0.58 6.75 16 50 H 0.10 3.52 8.14 -2.40 -0.02 3.50 16 51 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 52 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -68.08 400.07 2.03 -66.05 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -0.21 Total: 35.44 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 4.80 Total: -27.53 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -3.39 Total: -93.80 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.03 Total: -18.52 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 16 Polarization: -7.81 SS G_CDS: -1.05 Total: -8.85 kcal Total: -68.08 2.03 -66.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714179921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.450 kcal (2) G-P(sol) polarization free energy of solvation -68.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds