Wall clock time and date at job start Sat Apr 11 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47429 * 2 1 4 4 C 1.53001 * 109.47154 * 240.00668 * 2 1 3 5 5 C 1.53001 * 109.47154 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47421 * 60.00043 * 5 4 2 7 7 C 1.53001 * 109.46921 * 300.00100 * 6 5 4 8 8 C 1.53000 * 109.47421 * 120.00711 * 2 1 3 9 9 C 1.53002 * 109.46654 * 299.99823 * 8 2 1 10 10 N 1.46904 * 109.46886 * 184.97953 * 9 8 2 11 11 C 1.46901 * 111.00075 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47213 * 179.97438 * 11 10 9 13 13 C 1.52995 * 117.49698 * 243.61873 * 12 11 10 14 14 C 1.52995 * 60.00040 * 252.51122 * 13 12 11 15 15 N 1.46501 * 109.47053 * 59.99634 * 8 2 1 16 16 C 1.34782 * 119.99577 * 173.53901 * 15 8 2 17 17 O 1.21273 * 120.00184 * 354.60720 * 16 15 8 18 18 C 1.50702 * 119.99676 * 174.61281 * 16 15 8 19 19 S 1.80995 * 109.47233 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00176 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99588 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99914 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99911 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99811 * 179.72690 * 22 20 19 25 25 H 1.48503 * 109.46960 * 180.27538 * 24 22 20 26 26 H 1.48496 * 109.47107 * 300.27570 * 24 22 20 27 27 H 1.48500 * 109.46931 * 60.27850 * 24 22 20 28 28 H 1.09002 * 109.46845 * 299.99153 * 1 2 3 29 29 H 1.09000 * 109.46800 * 59.99332 * 1 2 3 30 30 H 1.08996 * 109.47023 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46982 * 299.99812 * 4 2 1 32 32 H 1.08994 * 109.47429 * 59.99897 * 4 2 1 33 33 H 1.09002 * 109.46845 * 180.02562 * 5 4 2 34 34 H 1.08996 * 109.47023 * 299.99788 * 5 4 2 35 35 H 1.08996 * 109.47230 * 59.99872 * 6 5 4 36 36 H 1.08994 * 109.47134 * 180.02562 * 6 5 4 37 37 H 1.09005 * 109.46851 * 300.00075 * 7 6 5 38 38 H 1.08994 * 109.47429 * 179.97438 * 7 6 5 39 39 H 1.08994 * 109.47362 * 304.97826 * 9 8 2 40 40 H 1.09002 * 109.47438 * 64.98148 * 9 8 2 41 41 H 1.00895 * 111.00223 * 56.04413 * 10 9 8 42 42 H 1.09004 * 109.46706 * 300.00021 * 11 10 9 43 43 H 1.08996 * 109.47240 * 59.99862 * 11 10 9 44 44 H 1.08999 * 115.54922 * 29.33075 * 12 11 10 45 45 H 1.09002 * 117.50398 * 0.02562 * 13 12 11 46 46 H 1.09006 * 117.49769 * 145.01914 * 13 12 11 47 47 H 1.09005 * 117.50088 * 252.51471 * 14 13 12 48 48 H 1.09000 * 117.52186 * 107.48341 * 14 13 12 49 49 H 0.96992 * 120.00332 * 353.54057 * 15 8 2 50 50 H 1.09005 * 109.47052 * 59.99972 * 18 16 15 51 51 H 1.09001 * 109.46800 * 300.00343 * 18 16 15 52 52 H 0.97000 * 120.00357 * 359.72862 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7205 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5706 -0.7205 1.2488 8 6 2.0401 -0.7214 1.2491 9 6 1.5301 -0.0002 2.4984 10 7 2.1155 -0.6199 3.6948 11 6 1.6468 0.0478 4.9165 12 6 2.2760 -0.6243 6.1385 13 6 1.3355 -1.3199 7.1246 14 6 2.0038 0.0020 7.5076 15 7 1.5517 -2.1026 1.2490 16 6 1.9812 -2.9692 2.1877 17 8 2.8440 -2.6355 2.9718 18 6 1.3892 -4.3531 2.2627 19 16 2.1674 -5.2697 3.6155 20 6 1.3117 -6.8038 3.4778 21 1 0.5612 -6.9366 2.7126 22 6 1.6021 -7.8414 4.3527 23 7 2.5164 -7.6792 5.2856 24 14 0.6894 -9.4651 4.2116 25 1 1.1760 -10.3991 5.2586 26 1 -0.7659 -9.2324 4.3935 27 1 0.9327 -10.0547 2.8705 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6767 -1.7487 -1.2494 32 1 1.6767 -0.2073 -2.1392 33 1 3.9333 -1.2339 -2.1400 34 1 3.9329 0.3072 -1.2498 35 1 3.7177 -2.4693 -0.0004 36 1 5.1706 -1.4407 -0.0006 37 1 3.9336 0.3074 1.2486 38 1 3.9339 -1.2343 2.1387 39 1 1.8187 1.0499 2.4550 40 1 0.4437 -0.0768 2.5442 41 1 3.1233 -0.6193 3.6460 42 1 1.9359 1.0984 4.8900 43 1 0.5613 -0.0289 4.9788 44 1 3.2563 -1.0723 5.9759 45 1 0.2685 -1.2991 6.9026 46 1 1.6969 -2.2260 7.6110 47 1 2.8049 -0.0343 8.2459 48 1 1.3768 0.8932 7.5377 49 1 0.9194 -2.3934 0.5735 50 1 1.5652 -4.8751 1.3221 51 1 0.3166 -4.2801 2.4426 52 1 2.9901 -6.8359 5.3592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714179923.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:20 Heat of formation + Delta-G solvation = -17.112227 kcal Electronic energy + Delta-G solvation = -29404.022811 eV Core-core repulsion = 25723.071382 eV Total energy + Delta-G solvation = -3680.951429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.75713 -37.62668 -37.56248 -34.96414 -33.45945 -32.52355 -32.42530 -30.71783 -28.47062 -27.27019 -25.84174 -24.73259 -24.06136 -22.16191 -21.70998 -21.16762 -20.59157 -20.28248 -18.79254 -18.25119 -16.71595 -16.19519 -15.65592 -15.36695 -14.97548 -14.63279 -14.55852 -14.33571 -14.22410 -13.82204 -13.78306 -13.65396 -13.37590 -13.10809 -12.96121 -12.70651 -12.28795 -12.24397 -12.11404 -11.95148 -11.73486 -11.68896 -11.55194 -11.41592 -11.32424 -11.08094 -11.02409 -10.87215 -10.64998 -10.22774 -10.20243 -10.13442 -10.01319 -9.81429 -9.45074 -8.93530 -8.81050 -8.64181 -8.08923 -7.81467 -6.54311 -6.52022 -3.88695 3.13037 3.39378 3.41475 3.43993 3.60825 3.81186 3.92818 4.27268 4.33149 4.49854 4.56549 4.66429 4.92881 4.96575 5.01930 5.11737 5.13191 5.24196 5.25184 5.28657 5.30171 5.33585 5.35789 5.45460 5.47219 5.59386 5.61462 5.63251 5.67770 5.69274 5.77556 5.82571 5.83749 5.85598 5.86664 5.95229 5.97186 6.08815 6.11842 6.15768 6.19460 6.22162 6.32037 6.37238 6.47510 6.50134 6.95575 7.30258 7.74830 7.99018 8.01759 8.58473 8.98097 9.35568 10.89901 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008878 B = 0.004078 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.043189 B = 6864.434504 C = 9051.629753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 H 0.079 0.921 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.141 4.141 8 C 0.195 3.805 9 C 0.053 3.947 10 N -0.654 5.654 11 C 0.091 3.909 12 C -0.138 4.138 13 C -0.166 4.166 14 C -0.190 4.190 15 N -0.726 5.726 16 C 0.537 3.463 17 O -0.478 6.478 18 C -0.128 4.128 19 S -0.107 6.107 20 C -0.607 4.607 21 H 0.062 0.938 22 C 0.036 3.964 23 N -0.887 5.887 24 Si 1.081 2.919 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.286 1.286 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.106 0.894 39 H 0.025 0.975 40 H 0.071 0.929 41 H 0.352 0.648 42 H 0.019 0.981 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.390 0.610 50 H 0.081 0.919 51 H 0.083 0.917 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 19.904 -10.127 22.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.150 4.150 7 C -0.180 4.180 8 C 0.108 3.892 9 C -0.077 4.077 10 N -0.290 5.290 11 C -0.038 4.038 12 C -0.157 4.157 13 C -0.203 4.203 14 C -0.228 4.228 15 N -0.382 5.382 16 C 0.322 3.678 17 O -0.349 6.349 18 C -0.280 4.280 19 S 0.119 5.881 20 C -0.755 4.755 21 H 0.080 0.920 22 C -0.175 4.175 23 N -0.521 5.521 24 Si 0.907 3.093 25 H -0.204 1.204 26 H -0.212 1.212 27 H -0.212 1.212 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.043 0.957 40 H 0.089 0.911 41 H 0.175 0.825 42 H 0.037 0.963 43 H 0.082 0.918 44 H 0.126 0.874 45 H 0.108 0.892 46 H 0.114 0.886 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.099 0.901 51 H 0.102 0.898 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.400 18.461 -8.072 20.197 hybrid contribution -1.034 1.738 -2.106 2.920 sum -2.434 20.199 -10.179 22.749 Atomic orbital electron populations 1.21901 0.94884 1.02178 1.01847 1.21356 0.95852 0.99687 0.94165 0.90249 1.21571 0.95915 1.00772 0.96752 1.21546 0.95356 1.00465 0.98247 1.21413 0.99839 0.99977 0.93795 1.22147 0.94398 1.00529 1.00889 1.20159 0.93848 0.82144 0.93046 1.22425 1.00016 0.94694 0.90615 1.60744 1.14516 1.54383 0.99309 1.21483 0.99127 0.93752 0.89435 1.22141 1.01031 1.03107 0.89402 1.22919 0.98443 0.95698 1.03238 1.22962 1.03863 0.97255 0.98702 1.45912 1.49075 1.10103 1.33105 1.19814 0.82637 0.85390 0.79935 1.90506 1.29342 1.76140 1.38961 1.23296 1.03796 0.96028 1.04868 1.84697 1.53253 1.11209 1.38922 1.23743 1.28252 0.99856 1.23695 0.91989 1.25966 0.96688 1.02684 0.92125 1.70790 1.21829 1.28279 1.31217 0.83374 0.75291 0.74290 0.76306 1.20359 1.21243 1.21249 0.92244 0.92562 0.92395 0.91716 0.92024 0.92275 0.92383 0.91661 0.92387 0.92578 0.87612 0.95685 0.91090 0.82531 0.96262 0.91850 0.87446 0.89165 0.88638 0.89146 0.89477 0.77521 0.90100 0.89844 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.67 37.16 0.32 -0.84 16 2 C -0.09 -0.77 2.01 -90.62 -0.18 -0.95 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.11 -0.93 5.03 -26.73 -0.13 -1.07 16 5 C -0.12 -1.07 5.92 -26.73 -0.16 -1.22 16 6 C -0.11 -1.28 5.77 -26.73 -0.15 -1.43 16 7 C -0.14 -1.66 3.97 -26.70 -0.11 -1.77 16 8 C 0.20 2.13 0.35 -131.79 -0.05 2.08 16 9 C 0.05 0.62 4.34 -3.82 -0.02 0.60 16 10 N -0.65 -9.23 3.51 -113.77 -0.40 -9.63 16 11 C 0.09 1.20 5.97 -3.82 -0.02 1.18 16 12 C -0.14 -1.96 5.95 -90.62 -0.54 -2.49 16 13 C -0.17 -2.40 10.18 -26.74 -0.27 -2.67 16 14 C -0.19 -2.30 10.25 -26.74 -0.27 -2.57 16 15 N -0.73 -9.26 3.75 -47.58 -0.18 -9.44 16 16 C 0.54 9.36 6.86 -10.98 -0.08 9.29 16 17 O -0.48 -9.32 10.12 5.56 0.06 -9.27 16 18 C -0.13 -2.62 6.16 36.01 0.22 -2.40 16 19 S -0.11 -2.85 19.60 -107.50 -2.11 -4.96 16 20 C -0.61 -17.69 9.50 30.94 0.29 -17.39 16 21 H 0.06 1.75 7.80 -52.49 -0.41 1.34 16 22 C 0.04 1.05 5.49 -17.43 -0.10 0.95 16 23 N -0.89 -27.74 13.67 55.49 0.76 -26.98 16 24 Si 1.08 25.32 29.92 -169.99 -5.09 20.23 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.47 6.74 -51.93 -0.35 0.12 16 31 H 0.06 0.57 7.00 -51.93 -0.36 0.21 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.87 7.43 -51.93 -0.39 0.49 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.11 1.56 4.40 -51.93 -0.23 1.34 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.85 6.71 -51.93 -0.35 0.50 16 41 H 0.35 5.21 5.96 -39.29 -0.23 4.97 16 42 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.06 0.86 7.87 -51.93 -0.41 0.45 16 44 H 0.11 1.68 8.13 -51.93 -0.42 1.26 16 45 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 46 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 47 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.39 4.34 6.20 -40.82 -0.25 4.08 16 50 H 0.08 1.57 8.14 -51.91 -0.42 1.15 16 51 H 0.08 1.66 8.14 -51.92 -0.42 1.24 16 52 H 0.28 8.85 7.12 -40.82 -0.29 8.56 16 LS Contribution 402.22 15.07 6.06 6.06 Total: -1.00 -32.14 402.22 -11.30 -43.44 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -9.17 Total: 11.26 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -1.24 Total: -20.70 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.18 Total: -46.06 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.06 Total: -9.27 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.09 Total: 20.23 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -2.11 Total: -4.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.14 -11.30 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714179923.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.327 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds