Wall clock time and date at job start Sat Apr 11 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47307 * 2 1 4 4 C 1.52998 * 109.47171 * 120.00160 * 2 1 3 5 5 C 1.53004 * 109.47143 * 59.99539 * 4 2 1 6 6 C 1.53006 * 109.46880 * 60.00376 * 5 4 2 7 7 C 1.52998 * 109.46926 * 299.99757 * 6 5 4 8 8 C 1.52999 * 109.47421 * 60.00236 * 7 6 5 9 9 C 1.52998 * 109.47421 * 180.02562 * 8 7 6 10 10 N 1.46903 * 109.46729 * 297.79436 * 9 8 7 11 11 C 1.46902 * 110.99736 * 174.64647 * 10 9 8 12 12 C 1.52994 * 109.47200 * 179.97438 * 11 10 9 13 13 C 1.53003 * 117.49919 * 243.74841 * 12 11 10 14 14 C 1.53001 * 117.49936 * 175.08816 * 12 11 10 15 15 N 1.46506 * 109.46870 * 59.99680 * 8 7 6 16 16 C 1.34778 * 119.99712 * 182.23386 * 15 8 7 17 17 O 1.21284 * 120.00059 * 355.37835 * 16 15 8 18 18 C 1.50693 * 119.99780 * 175.38011 * 16 15 8 19 19 S 1.81008 * 109.47134 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99960 * 179.97438 * 19 18 16 21 21 H 1.07993 * 119.99980 * 0.02562 * 20 19 18 22 22 C 1.38793 * 119.99727 * 179.97438 * 20 19 18 23 23 N 1.31636 * 119.99840 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00324 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47079 * 89.99908 * 24 22 20 26 26 H 1.48502 * 109.47402 * 210.00022 * 24 22 20 27 27 H 1.48501 * 109.47264 * 329.99992 * 24 22 20 28 28 H 1.09000 * 109.47307 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47257 * 300.00105 * 1 2 3 30 30 H 1.08997 * 109.47474 * 59.99998 * 1 2 3 31 31 H 1.09002 * 109.47270 * 300.00278 * 4 2 1 32 32 H 1.08999 * 109.47532 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47457 * 300.00189 * 5 4 2 34 34 H 1.09005 * 109.47181 * 179.97438 * 5 4 2 35 35 H 1.09000 * 109.47043 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47228 * 59.99673 * 6 5 4 37 37 H 1.08998 * 109.47099 * 299.99996 * 7 6 5 38 38 H 1.09005 * 109.47074 * 180.02562 * 7 6 5 39 39 H 1.08996 * 109.47264 * 57.79083 * 9 8 7 40 40 H 1.09001 * 109.47022 * 177.79344 * 9 8 7 41 41 H 1.00898 * 111.00041 * 298.59810 * 10 9 8 42 42 H 1.09001 * 109.47162 * 300.00228 * 11 10 9 43 43 H 1.09004 * 109.46806 * 60.00016 * 11 10 9 44 44 H 1.08998 * 115.55048 * 29.41947 * 12 11 10 45 45 H 1.08995 * 117.50241 * 0.02562 * 13 12 11 46 46 H 1.09000 * 117.49812 * 145.02017 * 13 12 11 47 47 H 1.09002 * 117.49582 * 214.97857 * 14 12 11 48 48 H 1.08997 * 117.50187 * 359.97438 * 14 12 11 49 49 H 0.96996 * 119.99860 * 2.23040 * 15 8 7 50 50 H 1.08998 * 109.47468 * 60.00487 * 18 16 15 51 51 H 1.09001 * 109.47911 * 299.99998 * 18 16 15 52 52 H 0.97003 * 119.99589 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0399 -2.8851 -0.0001 7 6 1.5299 -2.1638 -1.2493 8 6 2.0399 -0.7213 -1.2493 9 6 1.5294 0.0001 -2.4982 10 7 2.0616 -0.6608 -3.6974 11 6 1.4920 -0.0746 -4.9180 12 6 2.0692 -0.7867 -6.1430 13 6 2.9205 0.0427 -7.1064 14 6 1.5122 -0.3977 -7.5139 15 7 3.5049 -0.7214 -1.2493 16 6 4.1788 0.4449 -1.2039 17 8 3.5754 1.4961 -1.2476 18 6 5.6821 0.4429 -1.0987 19 16 6.2865 2.1486 -1.0597 20 6 8.0198 1.8563 -0.9372 21 1 8.3961 0.8445 -0.9090 22 6 8.9015 2.9266 -0.8779 23 7 10.1964 2.7082 -0.7868 24 14 8.2507 4.6768 -0.9272 25 1 7.9806 5.1436 0.4563 26 1 9.2604 5.5628 -1.5603 27 1 6.9937 4.7155 -1.7170 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6766 -0.2075 2.1392 32 1 3.1299 -0.7217 1.2490 33 1 0.4399 -2.1638 1.2492 34 1 1.8936 -2.6778 2.1390 35 1 1.6769 -3.9128 0.0002 36 1 3.1299 -2.8851 -0.0001 37 1 0.4399 -2.1638 -1.2492 38 1 1.8928 -2.6779 -2.1393 39 1 0.4401 -0.0340 -2.5178 40 1 1.8601 1.0386 -2.4786 41 1 3.0697 -0.6224 -3.7141 42 1 0.4084 -0.1919 -4.9061 43 1 1.7423 0.9853 -4.9630 44 1 2.3511 -1.8287 -5.9916 45 1 3.0698 1.0956 -6.8674 46 1 3.7624 -0.4537 -7.5891 47 1 1.4283 -1.1836 -8.2645 48 1 0.7344 0.3653 -7.5431 49 1 3.9899 -1.5608 -1.2820 50 1 6.1059 -0.0726 -1.9605 51 1 5.9819 -0.0701 -0.1849 52 1 10.8126 3.4562 -0.7450 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714179924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:22 Heat of formation + Delta-G solvation = -49.165434 kcal Electronic energy + Delta-G solvation = -28942.550652 eV Core-core repulsion = 25260.209291 eV Total energy + Delta-G solvation = -3682.341361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.92843 -39.24598 -38.69072 -36.10234 -34.69970 -34.57130 -33.00212 -31.94159 -30.24174 -28.19577 -27.85684 -26.68401 -24.80653 -23.25678 -23.06286 -22.50414 -21.66091 -21.31616 -19.90372 -19.22223 -18.00311 -17.38097 -17.14536 -17.01416 -16.47964 -16.41644 -16.09070 -15.77314 -15.41802 -15.20146 -14.99404 -14.91589 -14.65998 -14.51555 -13.89832 -13.77723 -13.70848 -13.42283 -13.35898 -13.24267 -13.07904 -13.00258 -12.77095 -12.61786 -12.43250 -12.40140 -12.24581 -12.13190 -11.88761 -11.86387 -11.27753 -11.22976 -11.18754 -11.07967 -11.03484 -10.91008 -10.54575 -10.48935 -9.92137 -9.33820 -8.99183 -8.53177 -6.22983 0.98764 1.28693 1.44509 1.55084 1.63650 2.22040 2.30509 2.71980 2.83680 2.85239 3.14309 3.66277 3.79543 3.88567 3.89772 4.00151 4.01375 4.14738 4.18458 4.22826 4.31922 4.40266 4.45436 4.46808 4.49608 4.53925 4.60446 4.68631 4.72886 4.77256 4.79081 4.82624 4.90447 4.95731 4.96373 5.01747 5.15675 5.19563 5.22997 5.26974 5.29885 5.31783 5.40349 5.46896 5.52483 5.60222 5.69284 5.76434 6.03128 6.09965 6.32138 6.60533 6.92306 7.29392 8.59507 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008305 B = 0.003865 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3370.683533 B = 7241.883298 C = 9574.791150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.052 0.948 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.120 4.120 7 C -0.104 4.104 8 C 0.198 3.802 9 C 0.049 3.951 10 N -0.671 5.671 11 C 0.091 3.909 12 C -0.151 4.151 13 C -0.197 4.197 14 C -0.164 4.164 15 N -0.701 5.701 16 C 0.538 3.462 17 O -0.550 6.550 18 C -0.113 4.113 19 S -0.171 6.171 20 C -0.529 4.529 21 H 0.060 0.940 22 C 0.047 3.953 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.238 1.238 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.020 0.980 41 H 0.335 0.665 42 H 0.083 0.917 43 H 0.010 0.990 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.108 0.892 48 H 0.096 0.904 49 H 0.411 0.589 50 H 0.108 0.892 51 H 0.106 0.894 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.673 -13.843 -4.562 27.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.071 0.929 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.157 4.157 7 C -0.141 4.141 8 C 0.112 3.888 9 C -0.081 4.081 10 N -0.301 5.301 11 C -0.038 4.038 12 C -0.169 4.169 13 C -0.234 4.234 14 C -0.201 4.201 15 N -0.355 5.355 16 C 0.323 3.677 17 O -0.428 6.428 18 C -0.265 4.265 19 S 0.056 5.944 20 C -0.677 4.677 21 H 0.078 0.922 22 C -0.158 4.158 23 N -0.556 5.556 24 Si 0.736 3.264 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.162 1.162 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.039 0.961 41 H 0.152 0.848 42 H 0.101 0.899 43 H 0.029 0.971 44 H 0.132 0.868 45 H 0.098 0.902 46 H 0.116 0.884 47 H 0.126 0.874 48 H 0.115 0.885 49 H 0.249 0.751 50 H 0.126 0.874 51 H 0.124 0.876 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.958 -12.577 -4.591 28.323 hybrid contribution 2.283 0.487 0.157 2.340 sum -22.675 -12.090 -4.434 26.077 Atomic orbital electron populations 1.21929 0.93237 1.03046 1.01741 1.21403 0.97184 0.99354 0.94395 0.92948 1.21471 0.99734 0.96879 0.96689 1.21553 1.01420 0.93989 0.98255 1.21577 1.00717 0.99541 0.93870 1.21691 1.01969 0.91496 0.98961 1.20357 0.78128 0.97307 0.92987 1.22367 1.00288 0.95758 0.89713 1.60549 1.11837 1.56750 1.00944 1.21490 0.99656 0.94286 0.88349 1.22262 1.04230 1.00162 0.90246 1.23106 0.95452 1.00045 1.04832 1.23007 0.96184 1.03742 0.97209 1.45914 1.07108 1.07682 1.74757 1.19794 0.88094 0.84343 0.75433 1.90649 1.69779 1.32619 1.49745 1.23301 0.95728 1.00643 1.06780 1.84650 1.04071 1.08597 1.97100 1.22482 0.90924 0.96513 1.57784 0.92163 1.25538 0.94327 1.03041 0.92926 1.70021 1.02623 1.33894 1.49014 0.85879 0.80375 0.79836 0.80330 1.18745 1.18330 1.16204 0.90134 0.92597 0.92794 0.92588 0.93878 0.90589 0.91836 0.90102 0.92395 0.89348 0.89755 0.89225 0.96138 0.84835 0.89912 0.97148 0.86753 0.90153 0.88402 0.87353 0.88516 0.75134 0.87375 0.87622 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.14 71.98 0.59 -1.83 16 2 C -0.10 -2.30 2.00 -10.79 -0.02 -2.32 16 3 H 0.05 1.63 6.17 -2.39 -0.01 1.62 16 4 C -0.11 -2.27 5.29 30.59 0.16 -2.11 16 5 C -0.11 -1.66 5.65 30.60 0.17 -1.49 16 6 C -0.12 -1.53 5.75 30.60 0.18 -1.35 16 7 C -0.10 -1.45 4.36 30.59 0.13 -1.32 16 8 C 0.20 3.95 0.20 3.60 0.00 3.96 16 9 C 0.05 1.10 4.00 86.30 0.35 1.44 16 10 N -0.67 -13.83 5.79 -513.89 -2.97 -16.81 16 11 C 0.09 1.83 5.96 86.30 0.51 2.34 16 12 C -0.15 -2.69 5.94 -10.79 -0.06 -2.75 16 13 C -0.20 -3.73 10.18 30.62 0.31 -3.42 16 14 C -0.16 -2.50 10.25 30.62 0.31 -2.19 16 15 N -0.70 -16.00 3.29 -422.91 -1.39 -17.39 16 16 C 0.54 17.69 7.26 87.65 0.64 18.33 16 17 O -0.55 -22.09 12.12 -3.04 -0.04 -22.13 16 18 C -0.11 -4.26 6.16 71.23 0.44 -3.82 16 19 S -0.17 -8.60 18.55 -56.49 -1.05 -9.65 16 20 C -0.53 -30.99 10.04 67.95 0.68 -30.31 16 21 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 22 C 0.05 2.78 5.50 84.85 0.47 3.24 16 23 N -0.92 -56.20 13.97 21.65 0.30 -55.90 16 24 Si 0.91 45.36 27.74 68.60 1.90 47.26 16 25 H -0.26 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 28 H 0.08 1.03 4.81 -2.39 -0.01 1.02 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.93 6.48 -2.39 -0.02 0.91 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 1.05 7.60 -2.39 -0.02 1.03 16 33 H 0.08 0.93 6.43 -2.39 -0.02 0.92 16 34 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.80 6.91 -2.39 -0.02 0.78 16 37 H 0.09 1.08 6.43 -2.39 -0.02 1.07 16 38 H 0.08 1.19 7.67 -2.38 -0.02 1.17 16 39 H 0.09 1.75 6.53 -2.39 -0.02 1.74 16 40 H 0.02 0.63 6.24 -2.39 -0.01 0.62 16 41 H 0.33 7.86 8.12 -89.70 -0.73 7.13 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.01 0.25 7.87 -2.38 -0.02 0.23 16 44 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.08 1.73 8.03 -2.39 -0.02 1.71 16 46 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 48 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.41 7.46 7.40 -92.71 -0.69 6.77 16 50 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 51 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 52 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -69.44 401.68 1.08 -68.36 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -0.53 Total: 29.84 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 4.85 Total: -23.59 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -4.06 Total: -90.09 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.04 Total: -22.13 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.26 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.05 Total: -9.65 kcal Total: -69.44 1.08 -68.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714179924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.195 kcal (2) G-P(sol) polarization free energy of solvation -69.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds