Wall clock time and date at job start Sat Apr 11 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46910 * 109.47127 * 65.00091 * 4 2 1 6 6 C 1.46897 * 111.00178 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47289 * 180.02562 * 6 5 4 8 8 C 1.53947 * 113.57521 * 274.24498 * 7 6 5 9 9 C 1.53072 * 86.72215 * 220.68720 * 8 7 6 10 10 C 1.52916 * 121.17435 * 150.58447 * 9 8 7 11 11 C 1.53951 * 86.78155 * 100.75267 * 10 9 8 12 12 C 1.52908 * 121.06845 * 259.12347 * 9 8 7 13 13 C 1.52910 * 88.06972 * 24.83670 * 9 8 7 14 14 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 15 15 N 1.46501 * 109.47135 * 295.00335 * 14 2 1 16 16 C 1.34783 * 119.99675 * 179.97438 * 15 14 2 17 17 O 1.21278 * 120.00464 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99677 * 180.02562 * 16 15 14 19 19 S 1.81003 * 109.46963 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99661 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00450 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99746 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99871 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99859 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47381 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47387 * 120.00137 * 24 22 20 27 27 H 1.48505 * 109.47213 * 240.00022 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 32 32 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 33 33 H 1.00896 * 110.99608 * 56.04490 * 5 4 2 34 34 H 1.09005 * 109.47233 * 300.00192 * 6 5 4 35 35 H 1.09006 * 109.47211 * 59.99522 * 6 5 4 36 36 H 1.08997 * 112.82011 * 45.33051 * 7 6 5 37 37 H 1.09006 * 113.66541 * 335.13177 * 8 7 6 38 38 H 1.09001 * 113.66906 * 106.18980 * 8 7 6 39 39 H 1.08999 * 113.66395 * 215.22557 * 10 9 8 40 40 H 1.09001 * 113.65929 * 346.28198 * 10 9 8 41 41 H 1.09000 * 113.58063 * 270.13241 * 11 10 9 42 42 H 1.08996 * 113.65363 * 139.34350 * 11 10 9 43 43 H 1.08998 * 113.66376 * 13.62687 * 12 9 8 44 44 H 1.08995 * 113.66206 * 144.69118 * 12 9 8 45 45 H 1.09001 * 113.65948 * 220.69542 * 13 9 8 46 46 H 1.08995 * 113.74572 * 89.64977 * 13 9 8 47 47 H 1.09006 * 109.47194 * 55.00274 * 14 2 1 48 48 H 1.08997 * 109.47756 * 174.99755 * 14 2 1 49 49 H 0.96997 * 120.00359 * 0.02562 * 15 14 2 50 50 H 1.09007 * 109.47112 * 299.99764 * 18 16 15 51 51 H 1.08999 * 109.47201 * 59.99776 * 18 16 15 52 52 H 0.97002 * 119.99737 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 1.6515 0.0374 -2.4456 6 6 2.1249 -0.6271 -3.6672 7 6 1.7026 0.1909 -4.8892 8 6 0.2839 -0.1367 -5.3892 9 6 0.8552 -0.0371 -6.8059 10 6 0.2634 -0.8512 -7.9571 11 6 -0.4670 0.4370 -8.3778 12 6 0.6459 1.2174 -7.6547 13 6 2.2267 -0.3763 -6.2210 14 6 2.0400 -0.7212 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9956 -0.4135 3.6660 17 8 2.6249 -1.4440 3.7794 18 6 1.5964 0.3645 4.8934 19 16 2.1999 -0.4886 6.3713 20 6 1.6105 0.6070 7.6190 21 1 1.0583 1.4931 7.3428 22 6 1.8566 0.3317 8.9570 23 7 2.5309 -0.7475 9.2936 24 14 1.2311 1.4927 10.2798 25 1 0.5085 2.6238 9.6445 26 1 0.3086 0.7611 11.1848 27 1 2.3796 2.0167 11.0620 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 3.1263 -0.7994 -1.2055 32 1 1.6054 -1.7198 -1.2951 33 1 1.9882 0.9873 -2.3966 34 1 3.2118 -0.7051 -3.6405 35 1 1.6905 -1.6250 -3.7296 36 1 1.8864 1.2584 -4.7674 37 1 -0.0534 -1.1384 -5.1230 38 1 -0.4506 0.6346 -5.1576 39 1 1.0053 -1.1896 -8.6803 40 1 -0.4062 -1.6471 -7.6310 41 1 -1.4488 0.5515 -7.9184 42 1 -0.4831 0.5985 -9.4556 43 1 0.2819 2.0739 -7.0873 44 1 1.4953 1.4604 -8.2931 45 1 3.0421 0.2040 -6.6529 46 1 2.4378 -1.4451 -6.1884 47 1 1.6054 -1.7198 1.2952 48 1 3.1263 -0.7995 1.2057 49 1 1.1482 0.8591 2.3518 50 1 2.0310 1.3632 4.8478 51 1 0.5100 0.4427 4.9366 52 1 2.7026 -0.9401 10.2287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714375261.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:26 Heat of formation + Delta-G solvation = -18.034377 kcal Electronic energy + Delta-G solvation = -25833.562723 eV Core-core repulsion = 22152.571307 eV Total energy + Delta-G solvation = -3680.991417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89077 -39.29707 -37.69631 -36.03414 -34.33679 -32.42165 -32.23824 -29.35301 -27.65165 -26.34362 -26.21292 -26.18049 -25.45102 -24.12885 -22.78739 -21.00130 -20.43844 -19.99537 -18.34714 -17.82022 -16.38395 -16.24231 -16.19372 -15.79187 -15.72556 -15.58806 -15.18638 -14.79843 -14.69088 -14.46992 -13.96082 -13.76372 -13.41562 -13.18371 -13.07458 -12.97327 -12.67415 -12.58213 -12.49197 -12.42572 -12.09133 -11.93002 -11.79597 -11.33118 -11.25187 -11.21948 -11.06294 -11.01197 -10.99594 -10.96286 -10.74107 -10.55994 -10.47674 -10.08938 -9.79166 -9.37183 -9.06715 -8.84141 -8.74238 -8.21485 -6.48516 -6.20778 -3.91016 3.04992 3.13802 3.22265 3.28887 3.33499 3.61474 3.85013 3.96577 4.02925 4.20991 4.21468 4.36122 4.38104 4.45482 4.57425 4.70056 4.83439 4.85647 5.00540 5.05243 5.14536 5.16030 5.19058 5.24777 5.26857 5.27002 5.33182 5.37989 5.40156 5.43702 5.46615 5.47411 5.55544 5.61092 5.62637 5.67063 5.71157 5.81913 5.84078 5.92097 5.92140 6.02973 6.06941 6.15318 6.16056 6.17948 6.60798 6.69719 7.00662 7.60987 7.75070 8.36557 8.65327 9.24748 10.86770 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.041196 B = 0.001288 C = 0.001266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.515978 B =21741.534538 C =22112.173179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.074 0.926 4 C 0.066 3.934 5 N -0.685 5.685 6 C 0.069 3.931 7 C -0.103 4.103 8 C -0.098 4.098 9 C -0.108 4.108 10 C -0.129 4.129 11 C -0.140 4.140 12 C -0.117 4.117 13 C -0.123 4.123 14 C 0.126 3.874 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.339 0.661 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.063 0.937 49 H 0.398 0.602 50 H 0.089 0.911 51 H 0.089 0.911 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 3.968 -36.005 36.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.093 0.907 4 C -0.064 4.064 5 N -0.315 5.315 6 C -0.060 4.060 7 C -0.122 4.122 8 C -0.135 4.135 9 C -0.108 4.108 10 C -0.167 4.167 11 C -0.178 4.178 12 C -0.155 4.155 13 C -0.161 4.161 14 C 0.001 3.999 15 N -0.392 5.392 16 C 0.317 3.683 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.157 0.843 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.232 0.768 50 H 0.107 0.893 51 H 0.108 0.892 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.783 1.834 -35.704 35.950 hybrid contribution -0.345 2.502 0.731 2.629 sum -4.128 4.336 -34.973 35.481 Atomic orbital electron populations 1.21743 0.93834 1.02212 1.01836 1.21338 0.97467 0.99830 0.93206 0.90713 1.21906 0.97698 0.97922 0.88876 1.60424 1.64205 1.05680 1.01236 1.21970 0.97152 0.98051 0.88870 1.22473 0.96949 0.99763 0.92999 1.22654 0.96237 1.02037 0.92577 1.22503 0.96896 0.97501 0.93940 1.22750 0.99513 0.96676 0.97723 1.22811 0.98115 0.96725 1.00117 1.22642 0.98815 0.96034 0.97987 1.22826 0.96325 1.01149 0.95802 1.21256 0.99789 0.95492 0.83343 1.45985 1.59533 1.28129 1.05518 1.20304 0.78702 0.85479 0.83836 1.90698 1.38530 1.23878 1.86228 1.23532 1.04790 1.03429 0.98644 1.85399 1.72791 1.33060 0.92210 1.22917 1.41389 1.11215 0.92790 0.90881 1.24989 0.94856 0.95796 0.97932 1.70031 1.37559 1.24665 1.18059 0.86119 0.78575 0.80150 0.80662 1.19613 1.20563 1.20580 0.92743 0.91380 0.93058 0.94921 0.90590 0.84327 0.95259 0.90897 0.89399 0.89847 0.91373 0.90202 0.91478 0.90247 0.91668 0.91398 0.90074 0.91568 0.89943 0.91556 0.91872 0.76830 0.89277 0.89235 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.95 37.16 0.33 -0.83 16 2 C -0.10 -0.82 2.57 -90.63 -0.23 -1.05 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 4 C 0.07 0.50 5.07 -3.82 -0.02 0.48 16 5 N -0.68 -4.58 5.96 -113.77 -0.68 -5.26 16 6 C 0.07 0.43 5.51 -3.82 -0.02 0.41 16 7 C -0.10 -0.58 3.89 -89.64 -0.35 -0.92 16 8 C -0.10 -0.58 7.41 -26.20 -0.19 -0.77 16 9 C -0.11 -0.59 1.11 -154.63 -0.17 -0.76 16 10 C -0.13 -0.67 7.84 -26.28 -0.21 -0.88 16 11 C -0.14 -0.70 8.08 -25.74 -0.21 -0.90 16 12 C -0.12 -0.60 7.84 -26.28 -0.21 -0.81 16 13 C -0.12 -0.65 7.41 -26.28 -0.19 -0.85 16 14 C 0.13 1.46 5.06 -4.04 -0.02 1.44 16 15 N -0.74 -9.92 5.28 -60.29 -0.32 -10.24 16 16 C 0.53 10.06 7.85 -10.98 -0.09 9.97 16 17 O -0.52 -12.00 15.86 5.56 0.09 -11.91 16 18 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 24 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.55 7.75 -51.93 -0.40 0.15 16 30 H 0.05 0.43 7.18 -51.93 -0.37 0.06 16 31 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.34 2.05 8.73 -39.29 -0.34 1.71 16 34 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.49 7.88 -51.93 -0.41 0.08 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.40 4.24 7.65 -40.82 -0.31 3.92 16 50 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 51 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 52 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 429.40 15.07 6.47 6.47 Total: -1.00 -33.49 429.40 -11.92 -45.41 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -9.83 Total: -0.06 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -1.16 Total: -11.41 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.26 Total: -41.08 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -33.49 -11.92 -45.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714375261.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.374 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds