Wall clock time and date at job start Sat Apr 11 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 N 1.46898 * 109.47552 * 185.00272 * 4 2 1 6 6 C 1.46897 * 111.00002 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47225 * 179.97438 * 6 5 4 8 8 C 1.53954 * 113.57983 * 274.24590 * 7 6 5 9 9 C 1.53069 * 86.72201 * 220.68751 * 8 7 6 10 10 C 1.52910 * 121.17503 * 150.58696 * 9 8 7 11 11 C 1.53945 * 86.78637 * 100.74845 * 10 9 8 12 12 C 1.52908 * 121.06650 * 259.11672 * 9 8 7 13 13 C 1.52902 * 88.07375 * 24.83393 * 9 8 7 14 14 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 15 15 C 1.46505 * 119.99873 * 59.99624 * 14 2 1 16 16 C 1.34771 * 120.00092 * 239.99940 * 14 2 1 17 17 O 1.21287 * 120.00010 * 359.97438 * 16 14 2 18 18 C 1.50696 * 120.00122 * 179.97438 * 16 14 2 19 19 S 1.80999 * 109.47425 * 179.97438 * 18 16 14 20 20 C 1.76202 * 100.00373 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99772 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00011 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00093 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99832 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46893 * 89.99551 * 24 22 20 26 26 H 1.48499 * 109.47009 * 209.99758 * 24 22 20 27 27 H 1.48499 * 109.47212 * 329.99807 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 32 32 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 33 33 H 1.00900 * 110.99775 * 303.95287 * 5 4 2 34 34 H 1.08992 * 109.47483 * 299.99823 * 6 5 4 35 35 H 1.08998 * 109.47598 * 60.00204 * 6 5 4 36 36 H 1.09000 * 112.82249 * 45.33151 * 7 6 5 37 37 H 1.09000 * 113.66000 * 335.13220 * 8 7 6 38 38 H 1.08997 * 113.66222 * 106.18613 * 8 7 6 39 39 H 1.08998 * 113.66712 * 215.22076 * 10 9 8 40 40 H 1.09007 * 113.66186 * 346.27589 * 10 9 8 41 41 H 1.08998 * 113.58293 * 270.13527 * 11 10 9 42 42 H 1.08992 * 113.65400 * 139.34668 * 11 10 9 43 43 H 1.08995 * 113.66497 * 13.64060 * 12 9 8 44 44 H 1.09004 * 113.66192 * 144.68677 * 12 9 8 45 45 H 1.09001 * 113.66653 * 220.70126 * 13 9 8 46 46 H 1.08994 * 113.75001 * 89.65035 * 13 9 8 47 47 H 1.08999 * 109.46723 * 90.00515 * 15 14 2 48 48 H 1.08997 * 109.46979 * 210.00219 * 15 14 2 49 49 H 1.09005 * 109.46961 * 330.00570 * 15 14 2 50 50 H 1.09000 * 109.47333 * 300.00318 * 18 16 14 51 51 H 1.09005 * 109.46872 * 59.99879 * 18 16 14 52 52 H 0.97005 * 119.99923 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8268 -1.1904 6 6 4.0303 -1.5150 -2.3766 7 6 5.5546 -1.6050 -2.2798 8 6 6.2804 -0.3568 -2.8142 9 6 7.2939 -1.3205 -3.4363 10 6 8.0467 -0.9590 -4.7173 11 6 9.2411 -0.6055 -3.8126 12 6 8.6486 -1.5761 -2.7748 13 6 6.2001 -2.3889 -3.4369 14 7 2.0184 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4281 16 6 2.7932 -0.0357 2.0833 17 8 3.0866 1.1254 1.8911 18 6 3.2951 -0.7459 3.3140 19 16 4.3014 0.3915 4.2988 20 6 4.7441 -0.6694 5.6343 21 1 4.3928 -1.6905 5.6520 22 6 5.5433 -0.1924 6.6639 23 7 5.9711 1.0522 6.6425 24 14 6.0120 -1.3170 8.0800 25 1 7.2792 -2.0198 7.7554 26 1 6.1953 -0.5100 9.3130 27 1 4.9340 -2.3150 8.2972 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 1.7517 -0.1584 -2.1369 33 1 3.9280 0.0824 -1.0824 34 1 3.6095 -2.5190 -2.4308 35 1 3.7559 -0.9573 -3.2720 36 1 5.8978 -1.9204 -1.2945 37 1 5.7025 0.2044 -3.5485 38 1 6.6995 0.2745 -2.0307 39 1 8.2308 -1.8110 -5.3718 40 1 7.6277 -0.1014 -5.2438 41 1 9.2467 0.4338 -3.4841 42 1 10.2026 -0.9278 -4.2120 43 1 8.7105 -1.2116 -1.7495 44 1 9.0019 -2.6016 -2.8833 45 1 6.5552 -3.3787 -3.1501 46 1 5.5989 -2.4012 -4.3459 47 1 2.4157 -2.7377 0.9718 48 1 1.6238 -2.2852 2.5002 49 1 0.6903 -2.3002 0.9846 50 1 2.4471 -1.0881 3.9073 51 1 3.9005 -1.6025 3.0176 52 1 6.5300 1.3854 7.3620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714548962.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:09 Heat of formation + Delta-G solvation = -0.351233 kcal Electronic energy + Delta-G solvation = -27630.590273 eV Core-core repulsion = 23950.365655 eV Total energy + Delta-G solvation = -3680.224618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65242 -39.55702 -37.04342 -35.73869 -34.01714 -32.37293 -31.82719 -28.57165 -27.62980 -26.63739 -25.99955 -25.95063 -25.42878 -24.41533 -22.56683 -21.45766 -20.19138 -18.89697 -18.13944 -17.62629 -16.83342 -16.18729 -15.73382 -15.61037 -15.39667 -15.18838 -14.75876 -14.66793 -14.61740 -14.03591 -13.83326 -13.20003 -13.17307 -12.95085 -12.92302 -12.69956 -12.68986 -12.43334 -12.25466 -12.15607 -12.08269 -11.95128 -11.75258 -11.63215 -11.40902 -11.02311 -11.00637 -10.96938 -10.86243 -10.75964 -10.69855 -10.32112 -10.22192 -9.81781 -9.73764 -9.18799 -9.01187 -8.47804 -8.27859 -8.13872 -6.42119 -6.16156 -3.85355 3.06288 3.24613 3.26211 3.30671 3.34473 3.71241 3.96553 4.21528 4.26244 4.28246 4.44773 4.58552 4.62211 4.67082 4.74644 5.04511 5.10551 5.18357 5.18992 5.23669 5.25133 5.26096 5.32115 5.35729 5.46088 5.48323 5.49871 5.53190 5.58196 5.60101 5.60642 5.61676 5.65768 5.70090 5.70835 5.84604 5.89375 5.90935 5.91628 5.99250 6.05544 6.12775 6.17869 6.26301 6.31228 6.39625 6.81365 7.00258 7.33702 7.64919 7.74846 8.40874 8.75289 9.29207 10.91246 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008143 B = 0.002930 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3437.795389 B = 9554.773045 C =12118.000126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 H 0.099 0.901 4 C 0.052 3.948 5 N -0.681 5.681 6 C 0.073 3.927 7 C -0.103 4.103 8 C -0.115 4.115 9 C -0.103 4.103 10 C -0.129 4.129 11 C -0.140 4.140 12 C -0.119 4.119 13 C -0.121 4.121 14 N -0.602 5.602 15 C 0.084 3.916 16 C 0.541 3.459 17 O -0.525 6.525 18 C -0.147 4.147 19 S -0.063 6.063 20 C -0.532 4.532 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.346 0.654 34 H 0.068 0.932 35 H 0.025 0.975 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.056 0.944 48 H 0.070 0.930 49 H 0.062 0.938 50 H 0.085 0.915 51 H 0.088 0.912 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.626 -7.760 -23.516 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.117 0.883 4 C -0.078 4.078 5 N -0.312 5.312 6 C -0.056 4.056 7 C -0.122 4.122 8 C -0.152 4.152 9 C -0.103 4.103 10 C -0.166 4.166 11 C -0.178 4.178 12 C -0.156 4.156 13 C -0.159 4.159 14 N -0.337 5.337 15 C -0.059 4.059 16 C 0.329 3.671 17 O -0.400 6.400 18 C -0.298 4.298 19 S 0.164 5.836 20 C -0.681 4.681 21 H 0.089 0.911 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.743 3.257 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.165 0.835 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.103 0.897 51 H 0.107 0.893 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.103 -6.473 -23.317 24.544 hybrid contribution -0.179 -1.552 0.417 1.617 sum -4.282 -8.025 -22.900 24.640 Atomic orbital electron populations 1.22101 0.95000 1.02191 1.02537 1.20983 0.93437 0.98071 0.84217 0.88310 1.22316 0.88882 1.00463 0.96172 1.60334 1.04559 1.26511 1.39761 1.21911 0.94312 0.98759 0.90630 1.22531 0.93550 0.96782 0.99328 1.22803 0.96600 0.96067 0.99727 1.22406 0.93103 0.97821 0.96998 1.22750 0.96884 1.01028 0.95957 1.22810 0.97569 0.99872 0.97504 1.22653 0.94274 0.99687 0.98964 1.22797 0.97072 0.97658 0.98377 1.47569 1.51826 1.12112 1.22192 1.21660 1.00119 0.82179 1.01971 1.20180 0.76884 0.86586 0.83477 1.90659 1.56509 1.16805 1.76041 1.23523 1.03957 1.04636 0.97638 1.85347 1.61206 1.15430 1.21650 1.22866 1.37095 0.99747 1.08369 0.91052 1.24977 0.95196 0.95495 0.97923 1.70024 1.33225 1.14346 1.32777 0.86194 0.78885 0.79973 0.80602 1.20303 1.20814 1.19728 0.91753 0.91775 0.92302 0.91019 0.94801 0.83547 0.91352 0.95705 0.88194 0.90301 0.90987 0.90269 0.91695 0.90211 0.91702 0.90995 0.90014 0.91451 0.90295 0.92522 0.91165 0.91903 0.89652 0.89327 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.17 37.16 0.34 -1.18 16 2 C 0.14 1.65 2.88 -67.93 -0.20 1.46 16 3 H 0.10 1.43 6.90 -51.93 -0.36 1.07 16 4 C 0.05 0.52 4.98 -3.83 -0.02 0.50 16 5 N -0.68 -7.80 6.23 -113.79 -0.71 -8.51 16 6 C 0.07 0.70 5.51 -3.82 -0.02 0.68 16 7 C -0.10 -1.01 3.89 -89.63 -0.35 -1.36 16 8 C -0.11 -1.11 7.41 -26.20 -0.19 -1.30 16 9 C -0.10 -0.92 1.11 -154.63 -0.17 -1.09 16 10 C -0.13 -1.03 7.84 -26.28 -0.21 -1.23 16 11 C -0.14 -1.16 8.08 -25.75 -0.21 -1.37 16 12 C -0.12 -1.08 7.84 -26.28 -0.21 -1.28 16 13 C -0.12 -1.03 7.41 -26.29 -0.19 -1.22 16 14 N -0.60 -8.61 2.48 -173.93 -0.43 -9.04 16 15 C 0.08 0.96 9.40 59.85 0.56 1.52 16 16 C 0.54 10.45 7.69 -10.99 -0.08 10.37 16 17 O -0.52 -12.01 15.19 5.55 0.08 -11.93 16 18 C -0.15 -3.09 4.71 36.00 0.17 -2.92 16 19 S -0.06 -1.74 20.57 -107.50 -2.21 -3.96 16 20 C -0.53 -15.39 9.50 30.94 0.29 -15.09 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 24 Si 0.92 21.67 29.55 -169.99 -5.02 16.64 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.48 6.66 -51.93 -0.35 0.14 16 31 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.35 4.46 8.73 -39.29 -0.34 4.11 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.02 0.22 7.87 -51.93 -0.41 -0.19 16 36 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 0.72 7.92 -51.93 -0.41 0.30 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 49 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 50 H 0.09 1.68 7.40 -51.92 -0.38 1.29 16 51 H 0.09 1.78 8.11 -51.91 -0.42 1.36 16 52 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 423.99 15.07 6.39 6.39 Total: -1.00 -33.19 423.99 -11.38 -44.57 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -9.63 Total: 3.08 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -0.58 Total: -11.51 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.41 Total: -43.28 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.19 -11.38 -44.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714548962.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.217 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds