Wall clock time and date at job start Sat Apr 11 2020 06:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00218 * 2 1 4 4 C 1.50704 * 119.99660 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.46753 * 95.00089 * 4 2 1 6 6 N 1.46902 * 109.46931 * 179.97438 * 5 4 2 7 7 C 1.46901 * 110.99906 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47404 * 35.00274 * 7 6 5 9 9 C 1.53003 * 109.47281 * 275.00025 * 7 6 5 10 10 C 1.52998 * 109.46993 * 155.00316 * 7 6 5 11 11 C 1.53043 * 109.46159 * 180.02562 * 10 7 6 12 12 C 1.53192 * 109.31235 * 181.38403 * 11 10 7 13 13 N 1.46923 * 108.77880 * 305.36295 * 12 11 10 14 14 C 1.34777 * 120.63281 * 233.59095 * 13 12 11 15 15 O 1.21274 * 120.00135 * 0.27366 * 14 13 12 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46851 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99843 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00031 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00514 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99567 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46945 * 60.00520 * 22 20 18 24 24 H 1.48497 * 109.46774 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47349 * 299.99969 * 22 20 18 26 26 C 1.46929 * 118.73573 * 53.85825 * 13 12 11 27 27 C 1.53046 * 109.46155 * 300.06873 * 10 7 6 28 28 H 1.08002 * 119.99636 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.00180 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47283 * 239.99745 * 3 2 1 31 31 H 1.08996 * 109.46892 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.47023 * 119.99931 * 3 2 1 33 33 H 1.09006 * 109.47369 * 335.00605 * 4 2 1 34 34 H 1.08995 * 109.47258 * 215.00281 * 4 2 1 35 35 H 1.09000 * 109.46835 * 60.00568 * 5 4 2 36 36 H 1.08995 * 109.47396 * 300.00108 * 5 4 2 37 37 H 1.00897 * 111.00199 * 303.95725 * 6 5 4 38 38 H 1.09002 * 109.46830 * 59.99709 * 9 7 6 39 39 H 1.08995 * 109.47165 * 180.02562 * 9 7 6 40 40 H 1.09005 * 109.46981 * 300.00193 * 9 7 6 41 41 H 1.09005 * 109.45166 * 60.03107 * 10 7 6 42 42 H 1.08998 * 109.49723 * 61.43203 * 11 10 7 43 43 H 1.09001 * 109.52382 * 301.35208 * 11 10 7 44 44 H 1.09003 * 109.58465 * 185.57606 * 12 11 10 45 45 H 1.09001 * 109.58900 * 65.15124 * 12 11 10 46 46 H 1.09000 * 109.47161 * 299.99737 * 16 14 13 47 47 H 1.09001 * 109.46740 * 59.99879 * 16 14 13 48 48 H 0.96995 * 120.00407 * 179.97438 * 21 20 18 49 49 H 1.09007 * 109.58459 * 65.93046 * 26 13 12 50 50 H 1.08999 * 109.58820 * 186.35494 * 26 13 12 51 51 H 1.08999 * 109.49649 * 298.56955 * 27 10 7 52 52 H 1.09002 * 109.49469 * 58.62944 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3052 0.0006 5 6 2.4273 -1.6846 -1.4363 6 7 3.1623 -2.9565 -1.4357 7 6 3.5295 -3.3529 -2.8018 8 1 3.7585 -2.4637 -3.3890 9 6 2.3623 -4.1032 -3.4463 10 6 4.7579 -4.2638 -2.7556 11 6 5.1408 -4.6761 -4.1788 12 6 6.3497 -5.6156 -4.1263 13 7 7.4288 -4.9563 -3.3783 14 6 8.6580 -4.8278 -3.9159 15 8 8.8804 -5.2540 -5.0293 16 6 9.7542 -4.1485 -3.1361 17 16 11.2737 -4.1335 -4.1195 18 6 12.3545 -3.3072 -2.9998 19 1 11.9895 -2.9842 -2.0361 20 6 13.6748 -3.0705 -3.3569 21 7 14.1193 -3.4628 -4.5321 22 14 14.8205 -2.1938 -2.1701 23 1 14.9238 -2.9767 -0.9125 24 1 16.1661 -2.0657 -2.7848 25 1 14.2824 -0.8428 -1.8695 26 6 7.1440 -4.4451 -2.0305 27 6 5.9249 -3.5137 -2.1092 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 2.6902 1.3628 -0.8899 31 1 1.3553 2.1335 -0.0005 32 1 2.6902 1.3627 0.8900 33 1 1.4385 -2.0854 0.4352 34 1 2.9741 -1.1988 0.5900 35 1 3.0523 -0.9045 -1.8709 36 1 1.5167 -1.7910 -2.0257 37 1 3.9775 -2.9028 -0.8436 38 1 1.4871 -3.4543 -3.4792 39 1 2.6349 -4.3977 -4.4597 40 1 2.1333 -4.9926 -2.8590 41 1 4.5285 -5.1533 -2.1687 42 1 5.3945 -3.7888 -4.7588 43 1 4.3012 -5.1895 -4.6476 44 1 6.6875 -5.8333 -5.1395 45 1 6.0708 -6.5423 -3.6248 46 1 9.4577 -3.1245 -2.9091 47 1 9.9286 -4.6908 -2.2068 48 1 15.0418 -3.2971 -4.7818 49 1 6.9285 -5.2784 -1.3616 50 1 8.0061 -3.8903 -1.6604 51 1 6.1711 -2.6375 -2.7091 52 1 5.6432 -3.1991 -1.1043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714802511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:16 Heat of formation + Delta-G solvation = -57.263472 kcal Electronic energy + Delta-G solvation = -27177.528142 eV Core-core repulsion = 23494.835623 eV Total energy + Delta-G solvation = -3682.692518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28036 -39.55274 -37.93618 -36.56174 -34.59168 -34.07412 -32.41918 -31.60466 -30.14437 -28.79210 -28.01953 -27.68425 -26.30889 -24.16259 -23.49821 -22.46385 -21.17750 -20.34812 -19.51089 -19.21079 -18.19763 -17.17695 -16.94533 -16.87079 -16.58116 -16.27460 -15.85502 -15.70516 -15.48649 -15.12910 -15.08054 -14.64245 -14.47639 -14.41043 -14.29049 -13.97669 -13.84685 -13.51943 -13.38440 -13.33985 -13.16564 -12.89907 -12.86406 -12.64147 -12.62329 -12.51178 -12.39746 -12.20356 -12.01604 -11.80599 -11.72662 -11.48963 -11.36256 -11.32449 -11.13419 -10.82868 -10.27270 -9.92977 -9.67386 -9.35856 -8.68427 -8.34826 -6.13659 1.25042 1.33179 1.43552 1.45454 1.55066 1.56852 2.11629 2.27102 2.99000 3.14567 3.24663 3.62065 3.68328 3.73174 3.94883 3.99606 4.07132 4.09669 4.23106 4.24266 4.33819 4.34019 4.38564 4.43270 4.45113 4.50980 4.66352 4.67300 4.68659 4.70747 4.80817 4.82764 4.90387 4.93651 4.98640 5.00942 5.03056 5.08298 5.10700 5.12695 5.14863 5.22643 5.40210 5.40653 5.48120 5.60815 5.77004 5.99024 6.11757 6.18897 6.29720 6.51202 7.05917 7.14346 8.74120 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011991 B = 0.002150 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.439595 B =13018.192148 C =14969.277308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.122 4.122 4 C -0.079 4.079 5 C 0.071 3.929 6 N -0.687 5.687 7 C 0.094 3.906 8 H 0.032 0.968 9 C -0.139 4.139 10 C -0.079 4.079 11 C -0.119 4.119 12 C 0.109 3.891 13 N -0.606 5.606 14 C 0.531 3.469 15 O -0.569 6.569 16 C -0.123 4.123 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.262 1.262 26 C 0.102 3.898 27 C -0.128 4.128 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.024 0.976 36 H 0.065 0.935 37 H 0.345 0.655 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.271 0.729 49 H 0.094 0.906 50 H 0.087 0.913 51 H 0.053 0.947 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.425 3.838 11.887 31.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.135 4.135 3 C -0.179 4.179 4 C -0.117 4.117 5 C -0.059 4.059 6 N -0.321 5.321 7 C -0.015 4.015 8 H 0.051 0.949 9 C -0.197 4.197 10 C -0.098 4.098 11 C -0.158 4.158 12 C -0.013 4.013 13 N -0.340 5.340 14 C 0.318 3.682 15 O -0.448 6.448 16 C -0.274 4.274 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.020 4.020 27 C -0.166 4.166 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.167 0.833 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.069 0.931 43 H 0.116 0.884 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.080 0.920 49 H 0.112 0.888 50 H 0.105 0.895 51 H 0.072 0.928 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -29.545 2.809 10.150 31.366 hybrid contribution 1.404 1.595 1.133 2.408 sum -28.141 4.404 11.284 30.637 Atomic orbital electron populations 1.23875 0.95282 1.02332 1.02096 1.21849 0.95707 0.95986 0.99998 1.20911 1.00404 0.94241 1.02320 1.20577 1.00468 0.94220 0.96396 1.21869 0.98078 0.89338 0.96586 1.60611 1.29325 1.31646 1.10521 1.21445 0.94321 0.96530 0.89250 0.94948 1.21823 0.97115 1.00501 1.00226 1.21238 0.93164 0.99241 0.96129 1.21944 0.97216 0.99317 0.97301 1.21703 0.86370 0.96010 0.97223 1.48136 1.08904 1.58625 1.18359 1.20145 0.83650 0.78543 0.85822 1.90667 1.82106 1.50535 1.21495 1.23364 0.97043 1.04006 1.02961 1.85602 1.03047 1.77593 1.26373 1.23153 0.98126 1.43760 1.04332 0.89880 1.26149 0.99134 0.96219 0.97714 1.70178 1.17163 1.45525 1.21872 0.85001 0.76430 0.78740 0.77809 1.18555 1.20432 1.18608 1.22090 0.99209 0.98691 0.82028 1.22076 0.94313 0.97919 1.02309 0.87954 0.88227 0.91792 0.91590 0.91176 0.90686 0.90951 0.95738 0.91618 0.83334 0.93313 0.91721 0.91837 0.88914 0.93119 0.88373 0.91472 0.89545 0.87686 0.87460 0.91994 0.88820 0.89484 0.92772 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.25 13.90 67.78 0.94 -1.31 16 2 C -0.13 -1.59 5.31 -16.49 -0.09 -1.68 16 3 C -0.12 -1.28 10.12 71.23 0.72 -0.56 16 4 C -0.08 -0.89 5.64 29.85 0.17 -0.72 16 5 C 0.07 0.88 5.47 86.30 0.47 1.35 16 6 N -0.69 -8.35 6.31 -491.56 -3.10 -11.46 16 7 C 0.09 1.23 2.23 44.92 0.10 1.33 16 8 H 0.03 0.51 7.80 -2.39 -0.02 0.49 16 9 C -0.14 -1.72 9.07 71.98 0.65 -1.06 16 10 C -0.08 -1.05 1.87 -10.76 -0.02 -1.07 16 11 C -0.12 -2.00 5.04 30.67 0.15 -1.84 16 12 C 0.11 2.46 6.43 86.36 0.56 3.02 16 13 N -0.61 -16.29 2.97 -818.06 -2.43 -18.72 16 14 C 0.53 20.45 7.72 87.66 0.68 21.12 16 15 O -0.57 -27.29 15.27 -3.01 -0.05 -27.34 16 16 C -0.12 -4.98 4.50 71.24 0.32 -4.66 16 17 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 18 C -0.55 -31.25 9.50 67.96 0.65 -30.61 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.22 13.22 21.65 0.29 -55.94 16 22 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 26 C 0.10 1.88 6.37 86.51 0.55 2.43 16 27 C -0.13 -1.83 5.17 30.82 0.16 -1.67 16 28 H 0.10 1.00 7.83 -2.91 -0.02 0.97 16 29 H 0.10 1.05 7.99 -2.91 -0.02 1.03 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.62 7.78 -2.39 -0.02 0.60 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.89 7.99 -2.38 -0.02 0.87 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.02 0.34 8.05 -2.39 -0.02 0.32 16 36 H 0.07 0.91 7.44 -2.39 -0.02 0.89 16 37 H 0.35 3.65 6.14 -89.70 -0.55 3.10 16 38 H 0.05 0.63 7.46 -2.39 -0.02 0.61 16 39 H 0.06 0.74 6.40 -2.39 -0.02 0.72 16 40 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 1.29 6.36 -2.39 -0.02 1.27 16 44 H 0.07 1.91 7.00 -2.39 -0.02 1.89 16 45 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.10 3.87 7.70 -2.39 -0.02 3.86 16 47 H 0.11 3.92 7.93 -2.39 -0.02 3.90 16 48 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 49 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 50 H 0.09 1.69 5.93 -2.39 -0.01 1.67 16 51 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.10 0.96 6.16 -2.39 -0.01 0.94 16 Total: -1.00 -75.04 418.41 2.39 -72.66 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.33 Total: 19.84 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 6.48 Total: -14.74 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -5.24 Total: -86.11 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.05 Total: -27.34 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -75.04 2.39 -72.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714802511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.392 kcal (2) G-P(sol) polarization free energy of solvation -75.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds