Wall clock time and date at job start Sat Apr 11 2020 06:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99967 * 2 1 4 4 C 1.53008 * 109.47070 * 124.99602 * 3 2 1 5 5 C 1.52996 * 109.46821 * 183.52076 * 4 3 2 6 6 H 1.09007 * 109.47592 * 302.03033 * 5 4 3 7 7 C 1.53002 * 109.47451 * 62.03426 * 5 4 3 8 8 N 1.46903 * 109.46847 * 182.03516 * 5 4 3 9 9 C 1.46899 * 110.99846 * 64.73564 * 8 5 4 10 10 C 1.46903 * 110.99823 * 188.68626 * 8 5 4 11 11 C 1.53003 * 109.47009 * 161.50687 * 10 8 5 12 12 H 1.08996 * 110.88500 * 303.21521 * 11 10 8 13 13 C 1.55159 * 111.03578 * 179.31840 * 11 10 8 14 14 C 1.54316 * 102.85970 * 206.21455 * 13 11 10 15 15 N 1.47029 * 107.27905 * 22.52375 * 14 13 11 16 16 C 1.34770 * 125.64923 * 180.96887 * 15 14 13 17 17 O 1.21274 * 120.00175 * 179.68782 * 16 15 14 18 18 C 1.50700 * 120.00098 * 359.69531 * 16 15 14 19 19 S 1.80996 * 109.47195 * 179.97438 * 18 16 15 20 20 C 1.76208 * 100.00085 * 179.97438 * 19 18 16 21 21 H 1.07994 * 119.99583 * 0.02562 * 20 19 18 22 22 C 1.38794 * 119.99862 * 179.97438 * 20 19 18 23 23 N 1.31635 * 120.00310 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99833 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47392 * 270.00240 * 24 22 20 26 26 H 1.48502 * 109.47106 * 30.00058 * 24 22 20 27 27 H 1.48501 * 109.47329 * 150.00198 * 24 22 20 28 28 C 1.47421 * 108.69870 * 0.70472 * 15 14 13 29 29 H 1.07998 * 120.00243 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99807 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00463 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47053 * 5.00122 * 3 2 1 33 33 H 1.08998 * 109.46953 * 244.99546 * 3 2 1 34 34 H 1.08998 * 109.46778 * 63.51880 * 4 3 2 35 35 H 1.08992 * 109.47342 * 303.51820 * 4 3 2 36 36 H 1.08996 * 109.46711 * 59.99642 * 7 5 4 37 37 H 1.08997 * 109.47041 * 179.97438 * 7 5 4 38 38 H 1.09003 * 109.46700 * 299.99813 * 7 5 4 39 39 H 1.09006 * 109.46701 * 200.74554 * 9 8 5 40 40 H 1.08998 * 109.47409 * 320.74541 * 9 8 5 41 41 H 1.08998 * 109.47639 * 80.75147 * 9 8 5 42 42 H 1.08997 * 109.47468 * 41.50508 * 10 8 5 43 43 H 1.09000 * 109.47150 * 281.50309 * 10 8 5 44 44 H 1.09003 * 110.71516 * 324.76660 * 13 11 10 45 45 H 1.08993 * 110.72316 * 87.86305 * 13 11 10 46 46 H 1.08994 * 109.98651 * 263.04487 * 14 13 11 47 47 H 1.09005 * 109.77350 * 141.88416 * 14 13 11 48 48 H 1.09001 * 109.47556 * 59.99218 * 18 16 15 49 49 H 1.09003 * 109.46996 * 299.99572 * 18 16 15 50 50 H 0.96992 * 119.99690 * 179.97438 * 23 22 20 51 51 H 1.09003 * 110.36761 * 94.93824 * 28 15 14 52 52 H 1.09002 * 110.36419 * 217.26122 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1818 5 6 3.7362 2.6919 1.2332 6 1 4.2574 2.8679 0.2921 7 6 2.6980 3.7937 1.4550 8 7 4.7043 2.7018 2.3382 9 6 5.7814 1.7310 2.1029 10 6 5.2478 4.0500 2.5499 11 6 5.8700 4.1358 3.9451 12 1 5.1403 3.8774 4.7125 13 6 6.4716 5.5429 4.2011 14 6 7.5738 5.2606 5.2436 15 7 7.9360 3.8408 5.1228 16 6 8.8516 3.1971 5.8735 17 8 9.0662 2.0178 5.6892 18 6 9.6089 3.9427 6.9419 19 16 10.7552 2.8124 7.7692 20 6 11.4859 3.9153 8.9331 21 1 11.1763 4.9495 8.9649 22 6 12.4584 3.4547 9.8097 23 7 12.8353 2.1940 9.7713 24 14 13.2324 4.6237 11.0441 25 1 14.4311 5.2590 10.4399 26 1 12.2498 5.6735 11.4151 27 1 13.6318 3.8681 12.2585 28 6 7.1270 3.2364 4.0487 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 3.7781 0.5451 1.0599 35 1 2.4844 1.1732 2.1086 36 1 2.1770 3.6178 2.3961 37 1 3.1977 4.7617 1.4921 38 1 1.9798 3.7864 0.6351 39 1 6.2623 1.4854 3.0499 40 1 5.3647 0.8257 1.6615 41 1 6.5166 2.1615 1.4231 42 1 4.4454 4.7828 2.4642 43 1 6.0102 4.2566 1.7988 44 1 6.8978 5.9524 3.2852 45 1 5.7178 6.2163 4.6088 46 1 7.1985 5.4634 6.2467 47 1 8.4441 5.8840 5.0382 48 1 8.9062 4.3454 7.6715 49 1 10.1687 4.7600 6.4873 50 1 13.5152 1.8723 10.3837 51 1 7.6780 3.2448 3.1083 52 1 6.8438 2.2179 4.3145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714894113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:19 Heat of formation + Delta-G solvation = -10.460917 kcal Electronic energy + Delta-G solvation = -27036.166705 eV Core-core repulsion = 23355.503698 eV Total energy + Delta-G solvation = -3680.663007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.10779 -38.89000 -37.21608 -35.73023 -33.03793 -32.41083 -31.61733 -29.83142 -29.34497 -28.79762 -26.66476 -25.45908 -25.00597 -23.53981 -22.54986 -20.48080 -20.21691 -20.10867 -19.29348 -17.70634 -16.69917 -16.56236 -16.28166 -15.79294 -15.36339 -15.07423 -14.99020 -14.78678 -14.45891 -14.21493 -13.85784 -13.65629 -13.58405 -13.31963 -13.24652 -12.84121 -12.61352 -12.56220 -12.41271 -12.29405 -12.09217 -11.81095 -11.74202 -11.68535 -11.41310 -11.23749 -11.04982 -11.00313 -10.98938 -10.88284 -10.81051 -10.73511 -10.53575 -9.79360 -9.71726 -9.35244 -9.04817 -8.61912 -8.41049 -8.20772 -6.47864 -6.19739 -3.90202 1.89169 2.96967 3.11663 3.23496 3.27668 3.31821 3.48250 3.67009 4.21998 4.29133 4.38462 4.43777 4.48606 4.65168 4.72541 4.78649 4.86563 4.97527 5.03662 5.04892 5.10098 5.15291 5.15924 5.17817 5.23701 5.29483 5.31612 5.37555 5.47864 5.50105 5.52538 5.57371 5.59200 5.63176 5.68012 5.69169 5.75259 5.78515 5.91228 5.93896 5.98414 6.06301 6.11673 6.17567 6.24162 6.37544 6.50844 6.79255 6.81609 7.61299 7.74065 8.37134 8.61312 9.25423 10.87731 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.001737 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.958133 B =16115.333699 C =16831.394831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.096 4.096 4 C -0.109 4.109 5 C 0.080 3.920 6 H 0.039 0.961 7 C -0.154 4.154 8 N -0.536 5.536 9 C 0.004 3.996 10 C 0.058 3.942 11 C -0.095 4.095 12 H 0.093 0.907 13 C -0.126 4.126 14 C 0.102 3.898 15 N -0.628 5.628 16 C 0.548 3.452 17 O -0.517 6.517 18 C -0.146 4.146 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.272 1.272 27 H -0.282 1.282 28 C 0.111 3.889 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.029 0.971 42 H 0.087 0.913 43 H 0.038 0.962 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.268 0.732 51 H 0.060 0.940 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.565 5.144 -20.823 31.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.133 4.133 4 C -0.146 4.146 5 C -0.028 4.028 6 H 0.057 0.943 7 C -0.211 4.211 8 N -0.260 5.260 9 C -0.144 4.144 10 C -0.070 4.070 11 C -0.115 4.115 12 H 0.111 0.889 13 C -0.164 4.164 14 C -0.021 4.021 15 N -0.365 5.365 16 C 0.336 3.664 17 O -0.392 6.392 18 C -0.297 4.297 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.197 1.197 27 H -0.207 1.207 28 C -0.011 4.011 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.048 0.952 42 H 0.105 0.895 43 H 0.056 0.944 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.107 0.893 49 H 0.106 0.894 50 H 0.078 0.922 51 H 0.078 0.922 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.297 3.065 -20.535 31.206 hybrid contribution 0.750 2.353 0.264 2.484 sum -22.547 5.418 -20.270 30.800 Atomic orbital electron populations 1.23847 0.95988 1.01790 1.01768 1.22965 0.96040 0.98574 0.99344 1.20842 0.98321 0.95505 0.98674 1.21618 0.98038 0.96330 0.98657 1.21619 0.93050 0.95969 0.92134 0.94315 1.22069 0.98669 0.97793 1.02579 1.61980 1.15575 1.06436 1.41996 1.22907 0.93159 0.95980 1.02316 1.22271 0.98516 0.90784 0.95410 1.22372 0.96499 0.94707 0.97874 0.88856 1.22661 0.97644 0.96924 0.99196 1.21967 0.97809 0.82717 0.99620 1.48571 1.40564 1.10683 1.36712 1.20004 0.78242 0.87006 0.81110 1.90699 1.64519 1.15502 1.68437 1.23505 1.02692 1.04342 0.99152 1.85391 1.43827 1.13017 1.41234 1.22864 1.26321 0.97771 1.21351 0.90956 1.24988 0.95837 0.95641 0.97093 1.70022 1.29486 1.13975 1.36805 0.86170 0.79320 0.80112 0.79901 1.20283 1.19701 1.20743 1.22548 0.90262 0.98033 0.90303 0.88610 0.88675 0.87476 0.91122 0.91255 0.91519 0.90815 0.91530 0.92238 0.91975 0.89772 0.91330 0.95245 0.89487 0.94386 0.90663 0.89918 0.91266 0.91402 0.89347 0.89397 0.92201 0.92230 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.15 14.32 29.02 0.42 -0.73 16 2 C -0.15 -0.93 9.52 -36.02 -0.34 -1.27 16 3 C -0.10 -0.54 5.44 -27.88 -0.15 -0.70 16 4 C -0.11 -0.72 4.69 -26.73 -0.13 -0.85 16 5 C 0.08 0.55 2.19 -67.71 -0.15 0.40 16 6 H 0.04 0.27 8.13 -51.93 -0.42 -0.15 16 7 C -0.15 -0.89 8.45 37.16 0.31 -0.57 16 8 N -0.54 -4.45 4.57 -234.88 -1.07 -5.52 16 9 C 0.00 0.04 8.38 60.06 0.50 0.54 16 10 C 0.06 0.45 4.49 -3.82 -0.02 0.43 16 11 C -0.09 -0.87 3.28 -88.47 -0.29 -1.16 16 12 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.13 -1.00 6.42 -24.90 -0.16 -1.16 16 14 C 0.10 1.14 6.48 -3.06 -0.02 1.12 16 15 N -0.63 -9.49 3.33 -170.53 -0.57 -10.05 16 16 C 0.55 11.01 7.87 -10.99 -0.09 10.92 16 17 O -0.52 -12.38 16.12 5.56 0.09 -12.29 16 18 C -0.15 -3.10 5.35 36.01 0.19 -2.91 16 19 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 20 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 24 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.11 1.39 4.58 -2.53 -0.01 1.38 16 29 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 30 H 0.09 0.49 7.84 -52.49 -0.41 0.08 16 31 H 0.11 0.63 8.06 -52.49 -0.42 0.20 16 32 H 0.07 0.37 5.96 -51.93 -0.31 0.06 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.47 6.11 -51.93 -0.32 0.15 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.32 5.93 -51.93 -0.31 0.01 16 38 H 0.06 0.30 6.40 -51.93 -0.33 -0.03 16 39 H 0.08 0.88 4.89 -51.93 -0.25 0.63 16 40 H 0.07 0.55 5.76 -51.93 -0.30 0.26 16 41 H 0.03 0.26 7.59 -51.93 -0.39 -0.14 16 42 H 0.09 0.56 5.21 -51.93 -0.27 0.29 16 43 H 0.04 0.30 7.69 -51.93 -0.40 -0.10 16 44 H 0.07 0.53 8.04 -51.93 -0.42 0.12 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 49 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 50 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 51 H 0.06 0.73 7.49 -51.93 -0.39 0.35 16 52 H 0.08 1.19 5.98 -51.93 -0.31 0.88 16 LS Contribution 413.66 15.07 6.23 6.23 Total: -1.00 -34.21 413.66 -10.58 -44.79 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -9.03 Total: -2.43 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 0.27 Total: -7.69 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.91 Total: -41.26 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.21 -10.58 -44.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714894113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.328 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds