Wall clock time and date at job start Sat Apr 11 2020 06:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99967 * 2 1 4 4 C 1.53008 * 109.47070 * 124.99602 * 3 2 1 5 5 C 1.52996 * 109.46821 * 183.52076 * 4 3 2 6 6 H 1.09007 * 109.47592 * 302.03033 * 5 4 3 7 7 C 1.53002 * 109.47451 * 62.03426 * 5 4 3 8 8 N 1.46903 * 109.46847 * 182.03516 * 5 4 3 9 9 C 1.46899 * 110.99846 * 64.73564 * 8 5 4 10 10 C 1.46903 * 110.99823 * 188.68626 * 8 5 4 11 11 C 1.53003 * 109.47009 * 161.50687 * 10 8 5 12 12 H 1.08996 * 110.88500 * 303.21521 * 11 10 8 13 13 C 1.55159 * 111.03578 * 179.31840 * 11 10 8 14 14 C 1.54316 * 102.85970 * 206.21455 * 13 11 10 15 15 N 1.47029 * 107.27905 * 22.52375 * 14 13 11 16 16 C 1.34770 * 125.64923 * 180.96887 * 15 14 13 17 17 O 1.21274 * 120.00175 * 179.68782 * 16 15 14 18 18 C 1.50700 * 120.00098 * 359.69531 * 16 15 14 19 19 S 1.80996 * 109.47195 * 179.97438 * 18 16 15 20 20 C 1.76208 * 100.00085 * 179.97438 * 19 18 16 21 21 H 1.07994 * 119.99583 * 0.02562 * 20 19 18 22 22 C 1.38794 * 119.99862 * 179.97438 * 20 19 18 23 23 N 1.31635 * 120.00310 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99833 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47392 * 270.00240 * 24 22 20 26 26 H 1.48502 * 109.47106 * 30.00058 * 24 22 20 27 27 H 1.48501 * 109.47329 * 150.00198 * 24 22 20 28 28 C 1.47421 * 108.69870 * 0.70472 * 15 14 13 29 29 H 1.07998 * 120.00243 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99807 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00463 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47053 * 5.00122 * 3 2 1 33 33 H 1.08998 * 109.46953 * 244.99546 * 3 2 1 34 34 H 1.08998 * 109.46778 * 63.51880 * 4 3 2 35 35 H 1.08992 * 109.47342 * 303.51820 * 4 3 2 36 36 H 1.08996 * 109.46711 * 59.99642 * 7 5 4 37 37 H 1.08997 * 109.47041 * 179.97438 * 7 5 4 38 38 H 1.09003 * 109.46700 * 299.99813 * 7 5 4 39 39 H 1.09006 * 109.46701 * 200.74554 * 9 8 5 40 40 H 1.08998 * 109.47409 * 320.74541 * 9 8 5 41 41 H 1.08998 * 109.47639 * 80.75147 * 9 8 5 42 42 H 1.08997 * 109.47468 * 41.50508 * 10 8 5 43 43 H 1.09000 * 109.47150 * 281.50309 * 10 8 5 44 44 H 1.09003 * 110.71516 * 324.76660 * 13 11 10 45 45 H 1.08993 * 110.72316 * 87.86305 * 13 11 10 46 46 H 1.08994 * 109.98651 * 263.04487 * 14 13 11 47 47 H 1.09005 * 109.77350 * 141.88416 * 14 13 11 48 48 H 1.09001 * 109.47556 * 59.99218 * 18 16 15 49 49 H 1.09003 * 109.46996 * 299.99572 * 18 16 15 50 50 H 0.96992 * 119.99690 * 179.97438 * 23 22 20 51 51 H 1.09003 * 110.36761 * 94.93824 * 28 15 14 52 52 H 1.09002 * 110.36419 * 217.26122 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1818 5 6 3.7362 2.6919 1.2332 6 1 4.2574 2.8679 0.2921 7 6 2.6980 3.7937 1.4550 8 7 4.7043 2.7018 2.3382 9 6 5.7814 1.7310 2.1029 10 6 5.2478 4.0500 2.5499 11 6 5.8700 4.1358 3.9451 12 1 5.1403 3.8774 4.7125 13 6 6.4716 5.5429 4.2011 14 6 7.5738 5.2606 5.2436 15 7 7.9360 3.8408 5.1228 16 6 8.8516 3.1971 5.8735 17 8 9.0662 2.0178 5.6892 18 6 9.6089 3.9427 6.9419 19 16 10.7552 2.8124 7.7692 20 6 11.4859 3.9153 8.9331 21 1 11.1763 4.9495 8.9649 22 6 12.4584 3.4547 9.8097 23 7 12.8353 2.1940 9.7713 24 14 13.2324 4.6237 11.0441 25 1 14.4311 5.2590 10.4399 26 1 12.2498 5.6735 11.4151 27 1 13.6318 3.8681 12.2585 28 6 7.1270 3.2364 4.0487 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 3.7781 0.5451 1.0599 35 1 2.4844 1.1732 2.1086 36 1 2.1770 3.6178 2.3961 37 1 3.1977 4.7617 1.4921 38 1 1.9798 3.7864 0.6351 39 1 6.2623 1.4854 3.0499 40 1 5.3647 0.8257 1.6615 41 1 6.5166 2.1615 1.4231 42 1 4.4454 4.7828 2.4642 43 1 6.0102 4.2566 1.7988 44 1 6.8978 5.9524 3.2852 45 1 5.7178 6.2163 4.6088 46 1 7.1985 5.4634 6.2467 47 1 8.4441 5.8840 5.0382 48 1 8.9062 4.3454 7.6715 49 1 10.1687 4.7600 6.4873 50 1 13.5152 1.8723 10.3837 51 1 7.6780 3.2448 3.1083 52 1 6.8438 2.2179 4.3145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714894113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:19 Heat of formation + Delta-G solvation = -31.652253 kcal Electronic energy + Delta-G solvation = -27037.085630 eV Core-core repulsion = 23355.503698 eV Total energy + Delta-G solvation = -3681.581932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20467 -39.80425 -38.31521 -36.34319 -34.59868 -33.87555 -32.47207 -31.03619 -30.05124 -29.78246 -27.79253 -27.37115 -25.56879 -24.51716 -23.29012 -21.26594 -20.76401 -20.69645 -20.61357 -19.58287 -18.10762 -17.56772 -16.94570 -16.89429 -16.61230 -16.39876 -16.20789 -15.80502 -15.59519 -15.27409 -15.07632 -14.54153 -14.39025 -14.32718 -14.17619 -13.98823 -13.71654 -13.55222 -13.36143 -13.17117 -13.05559 -12.89501 -12.85899 -12.65447 -12.63335 -12.45105 -12.29862 -12.05530 -11.85511 -11.75017 -11.60237 -11.55470 -11.41389 -11.16084 -11.15087 -10.96391 -10.30257 -10.17802 -9.70132 -9.22797 -8.69857 -8.35529 -6.14867 1.23248 1.42384 1.43222 1.44530 1.54378 1.56061 2.10315 2.26469 2.86302 2.98533 3.24005 3.52863 3.63988 3.81571 3.90641 3.94193 4.00468 4.16874 4.19850 4.26892 4.29124 4.32214 4.39913 4.44352 4.47338 4.48933 4.53055 4.58032 4.63961 4.67616 4.75454 4.81107 4.85566 4.88334 4.96664 5.02621 5.05435 5.07538 5.14511 5.15784 5.24198 5.33581 5.40335 5.41563 5.43711 5.47128 5.79379 5.91687 6.14637 6.18714 6.22753 6.39551 7.05253 7.09941 8.73911 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.001737 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.958133 B =16115.333699 C =16831.394831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.090 4.090 4 C -0.104 4.104 5 C 0.081 3.919 6 H 0.041 0.959 7 C -0.150 4.150 8 N -0.547 5.547 9 C 0.008 3.992 10 C 0.062 3.938 11 C -0.083 4.083 12 H 0.086 0.914 13 C -0.111 4.111 14 C 0.088 3.912 15 N -0.620 5.620 16 C 0.543 3.457 17 O -0.570 6.570 18 C -0.119 4.119 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 1.001 2.999 25 H -0.267 1.267 26 H -0.257 1.257 27 H -0.277 1.277 28 C 0.107 3.893 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.029 0.971 42 H 0.109 0.891 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.111 0.889 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.105 0.895 49 H 0.106 0.894 50 H 0.272 0.728 51 H 0.062 0.938 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.187 8.560 -21.552 34.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.182 4.182 3 C -0.127 4.127 4 C -0.142 4.142 5 C -0.027 4.027 6 H 0.059 0.941 7 C -0.207 4.207 8 N -0.271 5.271 9 C -0.140 4.140 10 C -0.065 4.065 11 C -0.103 4.103 12 H 0.105 0.895 13 C -0.149 4.149 14 C -0.034 4.034 15 N -0.354 5.354 16 C 0.331 3.669 17 O -0.449 6.449 18 C -0.270 4.270 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.192 1.192 26 H -0.181 1.181 27 H -0.202 1.202 28 C -0.015 4.015 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.126 0.874 43 H 0.060 0.940 44 H 0.110 0.890 45 H 0.130 0.870 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.123 0.877 49 H 0.124 0.876 50 H 0.081 0.919 51 H 0.081 0.919 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.970 6.529 -21.298 33.462 hybrid contribution 1.137 1.278 0.386 1.754 sum -23.832 7.807 -20.912 32.653 Atomic orbital electron populations 1.23999 0.95981 1.02433 1.01126 1.23068 0.96362 0.98836 0.99953 1.20797 0.98148 0.95516 0.98282 1.21555 0.97897 0.96224 0.98515 1.21658 0.92952 0.96415 0.91631 0.94097 1.22047 0.98464 0.97545 1.02676 1.61966 1.15505 1.06711 1.42918 1.22800 0.93447 0.96649 1.01109 1.22285 0.99177 0.90860 0.94226 1.22309 0.94494 0.94615 0.98839 0.89536 1.22677 0.96964 0.96313 0.98984 1.22376 0.99528 0.80034 1.01441 1.48573 1.38658 1.12595 1.35612 1.19803 0.79148 0.86393 0.81523 1.90675 1.66551 1.17560 1.70077 1.23294 1.01504 1.02773 0.99386 1.85592 1.46672 1.17298 1.42931 1.23193 1.26714 0.98029 1.21534 0.89903 1.26153 0.96188 0.97529 0.99231 1.70190 1.30254 1.16353 1.37984 0.84925 0.78502 0.77651 0.76713 1.19214 1.18124 1.20219 1.22742 0.91598 0.97840 0.89273 0.88157 0.87944 0.87700 0.90343 0.90817 0.92337 0.92121 0.92266 0.91335 0.90794 0.91896 0.90921 0.95211 0.87353 0.94034 0.88989 0.87030 0.90522 0.90435 0.87669 0.87619 0.91948 0.91934 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.11 14.32 67.78 0.97 -1.14 16 2 C -0.16 -1.90 9.52 25.65 0.24 -1.66 16 3 C -0.09 -0.91 5.44 29.85 0.16 -0.74 16 4 C -0.10 -1.31 4.69 30.60 0.14 -1.17 16 5 C 0.08 0.98 2.19 44.91 0.10 1.07 16 6 H 0.04 0.49 8.13 -2.38 -0.02 0.47 16 7 C -0.15 -1.34 8.45 71.98 0.61 -0.73 16 8 N -0.55 -8.44 4.57 -897.02 -4.10 -12.54 16 9 C 0.01 0.14 8.38 127.69 1.07 1.21 16 10 C 0.06 0.79 4.49 86.30 0.39 1.18 16 11 C -0.08 -1.33 3.28 -9.40 -0.03 -1.36 16 12 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 13 C -0.11 -1.34 6.42 31.78 0.20 -1.14 16 14 C 0.09 1.73 6.48 86.73 0.56 2.29 16 15 N -0.62 -18.32 3.33 -811.82 -2.70 -21.02 16 16 C 0.54 22.22 7.87 87.66 0.69 22.91 16 17 O -0.57 -28.65 16.12 -3.01 -0.05 -28.70 16 18 C -0.12 -5.03 5.35 71.24 0.38 -4.65 16 19 S -0.15 -8.75 20.57 -56.49 -1.16 -9.92 16 20 C -0.55 -31.85 9.50 67.95 0.65 -31.21 16 21 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 22 C 0.01 0.79 5.49 84.86 0.47 1.26 16 23 N -0.91 -56.76 13.22 21.65 0.29 -56.47 16 24 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 27 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 28 C 0.11 2.66 4.58 86.86 0.40 3.06 16 29 H 0.10 0.94 8.06 -2.91 -0.02 0.91 16 30 H 0.10 0.91 7.84 -2.91 -0.02 0.89 16 31 H 0.10 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.08 0.67 5.96 -2.39 -0.01 0.65 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.82 6.11 -2.39 -0.01 0.80 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.49 5.93 -2.39 -0.01 0.47 16 38 H 0.07 0.50 6.40 -2.39 -0.02 0.48 16 39 H 0.06 1.41 4.89 -2.38 -0.01 1.40 16 40 H 0.07 1.21 5.76 -2.39 -0.01 1.19 16 41 H 0.03 0.52 7.59 -2.39 -0.02 0.50 16 42 H 0.11 0.97 5.21 -2.39 -0.01 0.96 16 43 H 0.04 0.53 7.69 -2.39 -0.02 0.51 16 44 H 0.09 0.88 8.04 -2.39 -0.02 0.86 16 45 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 48 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 49 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 50 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 51 H 0.06 1.52 7.49 -2.39 -0.02 1.51 16 52 H 0.06 1.84 5.98 -2.39 -0.01 1.83 16 Total: -1.00 -77.77 413.66 2.18 -75.59 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.88 Total: 17.87 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 7.00 Total: -10.81 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -6.51 Total: -90.03 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.05 Total: -28.70 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.92 kcal Total: -77.77 2.18 -75.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714894113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.935 kcal (2) G-P(sol) polarization free energy of solvation -77.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds