Wall clock time and date at job start Sat Apr 11 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99727 * 2 1 4 4 C 1.52999 * 109.47018 * 124.99938 * 3 2 1 5 5 C 1.52998 * 109.47202 * 175.01844 * 4 3 2 6 6 H 1.08999 * 109.47230 * 302.98655 * 5 4 3 7 7 C 1.53002 * 109.47204 * 182.98407 * 5 4 3 8 8 N 1.46903 * 109.47101 * 62.98525 * 5 4 3 9 9 C 1.46900 * 111.00038 * 192.86224 * 8 5 4 10 10 C 1.46902 * 111.00074 * 68.90713 * 8 5 4 11 11 C 1.53001 * 109.47315 * 189.99892 * 10 8 5 12 12 H 1.08993 * 110.88771 * 302.57901 * 11 10 8 13 13 C 1.55155 * 111.03967 * 178.66409 * 11 10 8 14 14 C 1.54308 * 102.86608 * 206.21552 * 13 11 10 15 15 N 1.47024 * 107.27518 * 22.53128 * 14 13 11 16 16 C 1.34772 * 125.64965 * 180.96930 * 15 14 13 17 17 O 1.21282 * 120.00040 * 179.69376 * 16 15 14 18 18 C 1.50703 * 119.99927 * 359.68447 * 16 15 14 19 19 S 1.80998 * 109.47168 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00128 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00135 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00355 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00467 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99714 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47405 * 90.00532 * 24 22 20 26 26 H 1.48505 * 109.47145 * 210.00617 * 24 22 20 27 27 H 1.48503 * 109.47207 * 330.00187 * 24 22 20 28 28 C 1.47429 * 108.70335 * 0.70066 * 15 14 13 29 29 H 1.08004 * 120.00206 * 180.02562 * 1 2 3 30 30 H 1.08007 * 120.00521 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00351 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47394 * 4.99843 * 3 2 1 33 33 H 1.08999 * 109.47074 * 244.99682 * 3 2 1 34 34 H 1.09000 * 109.47142 * 55.01578 * 4 3 2 35 35 H 1.09001 * 109.47333 * 295.02050 * 4 3 2 36 36 H 1.08999 * 109.47230 * 300.00248 * 7 5 4 37 37 H 1.08995 * 109.47232 * 60.00041 * 7 5 4 38 38 H 1.09005 * 109.46885 * 180.02562 * 7 5 4 39 39 H 1.09008 * 109.46990 * 289.99203 * 9 8 5 40 40 H 1.08998 * 109.46970 * 49.99005 * 9 8 5 41 41 H 1.09004 * 109.47172 * 169.99609 * 9 8 5 42 42 H 1.08997 * 109.47241 * 70.00164 * 10 8 5 43 43 H 1.08999 * 109.47019 * 310.00427 * 10 8 5 44 44 H 1.08997 * 110.71878 * 324.77939 * 13 11 10 45 45 H 1.09002 * 110.71511 * 87.86949 * 13 11 10 46 46 H 1.08994 * 109.98826 * 263.04790 * 14 13 11 47 47 H 1.09001 * 109.77331 * 141.88920 * 14 13 11 48 48 H 1.08993 * 109.47272 * 300.00742 * 18 16 15 49 49 H 1.09000 * 109.46706 * 60.00882 * 18 16 15 50 50 H 0.96997 * 120.00599 * 179.97438 * 23 22 20 51 51 H 1.08997 * 110.36533 * 94.93678 * 28 15 14 52 52 H 1.08997 * 110.36807 * 217.26252 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3331 1.1816 5 6 3.8870 2.6019 1.1113 6 1 4.4091 2.6364 0.1551 7 6 4.9087 2.5939 2.2502 8 7 3.0207 3.7814 1.2390 9 6 3.7435 5.0074 0.8754 10 6 2.4636 3.8811 2.5947 11 6 1.3824 4.9632 2.6235 12 1 1.7842 5.9228 2.2982 13 6 0.7449 5.0763 4.0335 14 6 -0.6615 5.6345 3.7310 15 7 -0.9721 5.3011 2.3332 16 6 -2.1038 5.6311 1.6798 17 8 -2.2512 5.3068 0.5205 18 6 -3.1861 6.4027 2.3899 19 16 -4.5667 6.6889 1.2549 20 6 -5.6537 7.5833 2.3147 21 1 -5.3643 7.7907 3.3343 22 6 -6.8823 8.0206 1.8395 23 7 -7.6945 8.6883 2.6313 24 14 -7.3831 7.6614 0.0761 25 1 -8.1032 6.3639 0.0205 26 1 -8.2738 8.7432 -0.4157 27 1 -6.1706 7.5918 -0.7785 28 6 0.1620 4.5518 1.7626 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6212 1.4026 -0.9313 34 1 3.6828 0.4575 1.1402 35 1 2.4721 1.3247 2.1151 36 1 4.3867 2.5593 3.2064 37 1 5.5516 1.7188 2.1555 38 1 5.5155 3.4980 2.2003 39 1 4.4913 5.2278 1.6373 40 1 4.2357 4.8671 -0.0870 41 1 3.0399 5.8371 0.8062 42 1 3.2570 4.1415 3.2953 43 1 2.0273 2.9237 2.8795 44 1 0.6814 4.0969 4.5077 45 1 1.3094 5.7694 4.6574 46 1 -0.6697 6.7162 3.8648 47 1 -1.3925 5.1714 4.3938 48 1 -3.5355 5.8311 3.2496 49 1 -2.7883 7.3598 2.7272 50 1 -8.5530 8.9942 2.2991 51 1 -0.0138 3.4790 1.8420 52 1 0.3190 4.8353 0.7219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714894128.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:22 Heat of formation + Delta-G solvation = -21.322550 kcal Electronic energy + Delta-G solvation = -27881.745622 eV Core-core repulsion = 24200.611619 eV Total energy + Delta-G solvation = -3681.134003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.12657 -39.03193 -37.15661 -35.45656 -32.95276 -32.41326 -31.54902 -29.65638 -29.30988 -28.86308 -26.66746 -25.60140 -25.04064 -23.60488 -22.83995 -20.81515 -19.88031 -19.62926 -19.27051 -17.69163 -16.68042 -16.59604 -16.28644 -15.56348 -15.36523 -15.16426 -15.01464 -14.73678 -14.28447 -13.98671 -13.96716 -13.77359 -13.51892 -13.27576 -13.13185 -12.83100 -12.70806 -12.65836 -12.58035 -12.29865 -12.14051 -11.89972 -11.79958 -11.71596 -11.33899 -11.24867 -11.17290 -11.12705 -10.98452 -10.92238 -10.83658 -10.62574 -10.55648 -9.82826 -9.44661 -9.43488 -8.97658 -8.57885 -8.47121 -8.45808 -6.88541 -6.26415 -3.97694 2.17033 2.76245 3.03332 3.26917 3.35912 3.50160 3.53526 3.65326 4.31981 4.34725 4.36314 4.42038 4.53682 4.65331 4.71740 4.79906 4.92876 4.95543 4.97997 5.07967 5.09148 5.12699 5.13754 5.20828 5.21643 5.28373 5.33609 5.37222 5.42698 5.44644 5.53049 5.57539 5.60907 5.61480 5.67894 5.73719 5.76179 5.82510 5.90907 5.93061 5.99533 6.04665 6.06845 6.14868 6.45894 6.53575 6.67782 6.74458 6.77182 7.68372 7.96699 8.44089 8.52826 9.19951 10.82812 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.002411 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.834163 B =11611.371230 C =12647.203847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.162 4.162 3 C -0.087 4.087 4 C -0.105 4.105 5 C 0.079 3.921 6 H 0.082 0.918 7 C -0.186 4.186 8 N -0.531 5.531 9 C 0.021 3.979 10 C 0.064 3.936 11 C -0.099 4.099 12 H 0.084 0.916 13 C -0.126 4.126 14 C 0.101 3.899 15 N -0.627 5.627 16 C 0.546 3.454 17 O -0.518 6.518 18 C -0.117 4.117 19 S -0.143 6.143 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.127 3.873 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.270 0.730 51 H 0.063 0.937 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.215 -13.610 1.944 31.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.180 4.180 3 C -0.124 4.124 4 C -0.142 4.142 5 C -0.029 4.029 6 H 0.100 0.900 7 C -0.245 4.245 8 N -0.254 5.254 9 C -0.127 4.127 10 C -0.064 4.064 11 C -0.119 4.119 12 H 0.103 0.897 13 C -0.164 4.164 14 C -0.022 4.022 15 N -0.364 5.364 16 C 0.334 3.666 17 O -0.393 6.393 18 C -0.268 4.268 19 S 0.083 5.917 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 C 0.005 3.995 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.080 0.920 51 H 0.082 0.918 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 27.336 -14.022 -0.132 30.723 hybrid contribution 0.388 0.460 1.457 1.577 sum 27.725 -13.562 1.326 30.893 Atomic orbital electron populations 1.23940 0.96102 1.02043 1.00631 1.22998 0.96054 0.98475 1.00452 1.20662 0.98451 0.95406 0.97853 1.21590 0.97523 0.95992 0.99131 1.21804 0.91988 0.90659 0.98460 0.89970 1.22477 0.99938 1.02126 0.99974 1.62170 1.35039 1.02616 1.25572 1.22434 0.97370 0.92697 1.00176 1.22135 0.95972 0.99057 0.89283 1.22406 0.94819 0.99364 0.95286 0.89721 1.22658 0.94952 1.02037 0.96769 1.21981 0.96493 1.00516 0.83224 1.48510 1.17723 1.57323 1.12855 1.19940 0.81160 0.79049 0.86422 1.90704 1.78307 1.53756 1.16506 1.23253 0.97930 1.02333 1.03253 1.84783 1.14276 1.73495 1.19108 1.22313 1.03763 1.40253 1.00411 0.89430 1.24710 0.95051 0.93455 0.98110 1.69935 1.09707 1.36103 1.36039 0.86735 0.81065 0.78900 0.85169 1.19209 1.19973 1.15878 1.22043 0.83446 0.95666 0.98375 0.88877 0.88226 0.88057 0.90060 0.91557 0.91811 0.91793 0.92161 0.92100 0.92643 0.95585 0.91551 0.91046 0.94049 0.90148 0.90469 0.90102 0.91263 0.91232 0.88710 0.88683 0.91970 0.91829 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 14.32 29.02 0.42 -1.42 16 2 C -0.16 -1.39 9.52 -36.03 -0.34 -1.73 16 3 C -0.09 -0.71 5.46 -27.88 -0.15 -0.86 16 4 C -0.10 -0.69 4.62 -26.73 -0.12 -0.81 16 5 C 0.08 0.49 2.32 -67.71 -0.16 0.33 16 6 H 0.08 0.51 7.87 -51.93 -0.41 0.11 16 7 C -0.19 -0.99 8.41 37.16 0.31 -0.68 16 8 N -0.53 -3.81 3.97 -234.88 -0.93 -4.74 16 9 C 0.02 0.14 8.90 60.06 0.53 0.68 16 10 C 0.06 0.44 3.26 -3.82 -0.01 0.42 16 11 C -0.10 -0.83 2.89 -88.47 -0.26 -1.08 16 12 H 0.08 0.74 6.67 -51.93 -0.35 0.39 16 13 C -0.13 -0.94 6.42 -24.91 -0.16 -1.10 16 14 C 0.10 1.07 6.48 -3.07 -0.02 1.05 16 15 N -0.63 -8.99 3.33 -170.53 -0.57 -9.55 16 16 C 0.55 10.44 7.87 -10.99 -0.09 10.36 16 17 O -0.52 -11.82 16.12 5.56 0.09 -11.73 16 18 C -0.12 -2.38 5.35 36.01 0.19 -2.19 16 19 S -0.14 -3.72 18.55 -107.50 -1.99 -5.72 16 20 C -0.52 -15.19 10.04 30.94 0.31 -14.88 16 21 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 22 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.82 13.97 55.49 0.78 -26.05 16 24 Si 0.86 22.09 27.74 -169.99 -4.71 17.37 16 25 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.23 -6.06 6.74 56.52 0.38 -5.68 16 28 C 0.13 1.53 6.21 -2.52 -0.02 1.51 16 29 H 0.09 0.81 8.06 -52.48 -0.42 0.38 16 30 H 0.10 1.08 7.84 -52.48 -0.41 0.67 16 31 H 0.10 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.08 0.81 7.49 -51.93 -0.39 0.42 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.45 6.36 -51.93 -0.33 0.12 16 36 H 0.06 0.33 6.54 -51.93 -0.34 -0.01 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.05 0.30 7.02 -51.93 -0.36 -0.06 16 39 H 0.03 0.16 7.09 -51.92 -0.37 -0.21 16 40 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 41 H 0.07 0.53 6.74 -51.93 -0.35 0.18 16 42 H 0.04 0.26 6.77 -51.93 -0.35 -0.09 16 43 H 0.08 0.57 6.14 -51.93 -0.32 0.25 16 44 H 0.08 0.52 8.04 -51.93 -0.42 0.10 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 49 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 50 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 51 H 0.06 0.77 8.00 -51.93 -0.42 0.35 16 52 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 LS Contribution 418.28 15.07 6.30 6.30 Total: -1.00 -33.58 418.28 -10.14 -43.72 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -9.44 Total: -1.94 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 0.34 Total: -7.67 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.72 Total: -40.34 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.58 -10.14 -43.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714894128.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.399 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds