Wall clock time and date at job start Sat Apr 11 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99727 * 2 1 4 4 C 1.52999 * 109.47018 * 124.99938 * 3 2 1 5 5 C 1.52998 * 109.47202 * 175.01844 * 4 3 2 6 6 H 1.08999 * 109.47230 * 302.98655 * 5 4 3 7 7 C 1.53002 * 109.47204 * 182.98407 * 5 4 3 8 8 N 1.46903 * 109.47101 * 62.98525 * 5 4 3 9 9 C 1.46900 * 111.00038 * 192.86224 * 8 5 4 10 10 C 1.46902 * 111.00074 * 68.90713 * 8 5 4 11 11 C 1.53001 * 109.47315 * 189.99892 * 10 8 5 12 12 H 1.08993 * 110.88771 * 302.57901 * 11 10 8 13 13 C 1.55155 * 111.03967 * 178.66409 * 11 10 8 14 14 C 1.54308 * 102.86608 * 206.21552 * 13 11 10 15 15 N 1.47024 * 107.27518 * 22.53128 * 14 13 11 16 16 C 1.34772 * 125.64965 * 180.96930 * 15 14 13 17 17 O 1.21282 * 120.00040 * 179.69376 * 16 15 14 18 18 C 1.50703 * 119.99927 * 359.68447 * 16 15 14 19 19 S 1.80998 * 109.47168 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00128 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00135 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00355 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00467 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99714 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47405 * 90.00532 * 24 22 20 26 26 H 1.48505 * 109.47145 * 210.00617 * 24 22 20 27 27 H 1.48503 * 109.47207 * 330.00187 * 24 22 20 28 28 C 1.47429 * 108.70335 * 0.70066 * 15 14 13 29 29 H 1.08004 * 120.00206 * 180.02562 * 1 2 3 30 30 H 1.08007 * 120.00521 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00351 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47394 * 4.99843 * 3 2 1 33 33 H 1.08999 * 109.47074 * 244.99682 * 3 2 1 34 34 H 1.09000 * 109.47142 * 55.01578 * 4 3 2 35 35 H 1.09001 * 109.47333 * 295.02050 * 4 3 2 36 36 H 1.08999 * 109.47230 * 300.00248 * 7 5 4 37 37 H 1.08995 * 109.47232 * 60.00041 * 7 5 4 38 38 H 1.09005 * 109.46885 * 180.02562 * 7 5 4 39 39 H 1.09008 * 109.46990 * 289.99203 * 9 8 5 40 40 H 1.08998 * 109.46970 * 49.99005 * 9 8 5 41 41 H 1.09004 * 109.47172 * 169.99609 * 9 8 5 42 42 H 1.08997 * 109.47241 * 70.00164 * 10 8 5 43 43 H 1.08999 * 109.47019 * 310.00427 * 10 8 5 44 44 H 1.08997 * 110.71878 * 324.77939 * 13 11 10 45 45 H 1.09002 * 110.71511 * 87.86949 * 13 11 10 46 46 H 1.08994 * 109.98826 * 263.04790 * 14 13 11 47 47 H 1.09001 * 109.77331 * 141.88920 * 14 13 11 48 48 H 1.08993 * 109.47272 * 300.00742 * 18 16 15 49 49 H 1.09000 * 109.46706 * 60.00882 * 18 16 15 50 50 H 0.96997 * 120.00599 * 179.97438 * 23 22 20 51 51 H 1.08997 * 110.36533 * 94.93678 * 28 15 14 52 52 H 1.08997 * 110.36807 * 217.26252 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3331 1.1816 5 6 3.8870 2.6019 1.1113 6 1 4.4091 2.6364 0.1551 7 6 4.9087 2.5939 2.2502 8 7 3.0207 3.7814 1.2390 9 6 3.7435 5.0074 0.8754 10 6 2.4636 3.8811 2.5947 11 6 1.3824 4.9632 2.6235 12 1 1.7842 5.9228 2.2982 13 6 0.7449 5.0763 4.0335 14 6 -0.6615 5.6345 3.7310 15 7 -0.9721 5.3011 2.3332 16 6 -2.1038 5.6311 1.6798 17 8 -2.2512 5.3068 0.5205 18 6 -3.1861 6.4027 2.3899 19 16 -4.5667 6.6889 1.2549 20 6 -5.6537 7.5833 2.3147 21 1 -5.3643 7.7907 3.3343 22 6 -6.8823 8.0206 1.8395 23 7 -7.6945 8.6883 2.6313 24 14 -7.3831 7.6614 0.0761 25 1 -8.1032 6.3639 0.0205 26 1 -8.2738 8.7432 -0.4157 27 1 -6.1706 7.5918 -0.7785 28 6 0.1620 4.5518 1.7626 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6212 1.4026 -0.9313 34 1 3.6828 0.4575 1.1402 35 1 2.4721 1.3247 2.1151 36 1 4.3867 2.5593 3.2064 37 1 5.5516 1.7188 2.1555 38 1 5.5155 3.4980 2.2003 39 1 4.4913 5.2278 1.6373 40 1 4.2357 4.8671 -0.0870 41 1 3.0399 5.8371 0.8062 42 1 3.2570 4.1415 3.2953 43 1 2.0273 2.9237 2.8795 44 1 0.6814 4.0969 4.5077 45 1 1.3094 5.7694 4.6574 46 1 -0.6697 6.7162 3.8648 47 1 -1.3925 5.1714 4.3938 48 1 -3.5355 5.8311 3.2496 49 1 -2.7883 7.3598 2.7272 50 1 -8.5530 8.9942 2.2991 51 1 -0.0138 3.4790 1.8420 52 1 0.3190 4.8353 0.7219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714894128.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:21 Heat of formation + Delta-G solvation = -41.363373 kcal Electronic energy + Delta-G solvation = -27882.614657 eV Core-core repulsion = 24200.611619 eV Total energy + Delta-G solvation = -3682.003038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17009 -39.88548 -38.26512 -36.15278 -34.68770 -33.85519 -32.34963 -30.90584 -30.21312 -29.49806 -27.91379 -27.36974 -25.76601 -24.39130 -23.60457 -21.52508 -20.78360 -20.57488 -20.12637 -19.59244 -18.10204 -17.54548 -17.14720 -17.01217 -16.51359 -16.15533 -16.03273 -15.90840 -15.60403 -15.13959 -14.91375 -14.77628 -14.46201 -14.35916 -14.13961 -13.89084 -13.79251 -13.48393 -13.39814 -13.34788 -13.07829 -13.03272 -13.02044 -12.68841 -12.67696 -12.42436 -12.31655 -11.96376 -11.90854 -11.84423 -11.80259 -11.56385 -11.44987 -11.21644 -11.18286 -11.00945 -10.55530 -10.15696 -9.69322 -9.08210 -9.02538 -8.52734 -6.24090 0.95280 1.30308 1.43977 1.44860 1.51838 1.52910 2.08817 2.24320 2.67202 2.85289 2.96452 3.49896 3.64481 3.78470 3.84234 3.92682 4.10558 4.13495 4.20175 4.31072 4.35836 4.38241 4.40266 4.42147 4.51383 4.52112 4.62325 4.62823 4.71692 4.75796 4.78417 4.83073 4.91066 4.94081 4.97195 5.03677 5.07363 5.09472 5.14030 5.15854 5.29141 5.29893 5.38858 5.42650 5.48556 5.69732 5.80366 5.97109 6.09872 6.22637 6.27088 6.39035 6.92319 7.06876 8.59642 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.002411 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.834163 B =11611.371230 C =12647.203847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.085 4.085 4 C -0.098 4.098 5 C 0.082 3.918 6 H 0.081 0.919 7 C -0.180 4.180 8 N -0.547 5.547 9 C 0.024 3.976 10 C 0.070 3.930 11 C -0.087 4.087 12 H 0.084 0.916 13 C -0.113 4.113 14 C 0.088 3.912 15 N -0.618 5.618 16 C 0.544 3.456 17 O -0.566 6.566 18 C -0.101 4.101 19 S -0.177 6.177 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.047 3.953 23 N -0.915 5.915 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.257 1.257 27 H -0.238 1.238 28 C 0.127 3.873 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.277 0.723 51 H 0.062 0.938 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.805 -14.621 2.850 34.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.169 4.169 3 C -0.122 4.122 4 C -0.136 4.136 5 C -0.026 4.026 6 H 0.100 0.900 7 C -0.239 4.239 8 N -0.270 5.270 9 C -0.124 4.124 10 C -0.058 4.058 11 C -0.106 4.106 12 H 0.102 0.898 13 C -0.151 4.151 14 C -0.034 4.034 15 N -0.352 5.352 16 C 0.332 3.668 17 O -0.445 6.445 18 C -0.251 4.251 19 S 0.050 5.950 20 C -0.675 4.675 21 H 0.081 0.919 22 C -0.159 4.159 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.181 1.181 27 H -0.162 1.162 28 C 0.005 3.995 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.138 0.862 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.126 0.874 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.127 0.873 49 H 0.127 0.873 50 H 0.087 0.913 51 H 0.080 0.920 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 29.967 -15.032 0.825 33.536 hybrid contribution -0.280 0.741 1.264 1.492 sum 29.687 -14.291 2.089 33.014 Atomic orbital electron populations 1.23923 0.96724 1.01521 1.02636 1.23206 0.95724 0.99387 0.98603 1.20629 0.98323 0.94372 0.98886 1.21546 0.97244 0.96865 0.97940 1.21780 0.91944 0.89911 0.99000 0.90036 1.22410 0.99605 1.02515 0.99370 1.62140 1.35797 1.03148 1.25952 1.22390 0.97215 0.92164 1.00630 1.22074 0.95755 0.98402 0.89558 1.22346 0.93482 0.99844 0.94941 0.89756 1.22672 0.92696 1.03390 0.96338 1.22364 0.98878 1.01388 0.80789 1.48514 1.16522 1.55750 1.14447 1.19672 0.82163 0.79106 0.85884 1.90681 1.79510 1.55938 1.18366 1.23192 0.96168 1.03669 1.02106 1.84732 1.16363 1.73037 1.20872 1.22424 1.04697 1.40523 0.99872 0.91919 1.25541 0.95116 0.93302 1.01926 1.70005 1.10398 1.37030 1.37898 0.85884 0.80747 0.79358 0.80490 1.18675 1.18111 1.16246 1.22158 0.84221 0.95228 0.97877 0.88038 0.90307 0.86162 0.92396 0.91345 0.90441 0.92078 0.92007 0.91378 0.92595 0.94546 0.91461 0.92167 0.92362 0.90102 0.88997 0.87430 0.90563 0.90514 0.87329 0.87269 0.91304 0.91956 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.13 14.32 67.78 0.97 -3.16 16 2 C -0.15 -2.47 9.52 25.65 0.24 -2.23 16 3 C -0.08 -1.33 5.46 29.85 0.16 -1.17 16 4 C -0.10 -1.10 4.62 30.59 0.14 -0.96 16 5 C 0.08 0.84 2.32 44.91 0.10 0.95 16 6 H 0.08 0.87 7.87 -2.39 -0.02 0.85 16 7 C -0.18 -1.39 8.41 71.98 0.61 -0.79 16 8 N -0.55 -7.00 3.97 -897.02 -3.56 -10.56 16 9 C 0.02 0.29 8.90 127.69 1.14 1.42 16 10 C 0.07 0.79 3.26 86.30 0.28 1.07 16 11 C -0.09 -1.26 2.89 -9.40 -0.03 -1.28 16 12 H 0.08 1.29 6.67 -2.39 -0.02 1.27 16 13 C -0.11 -1.30 6.42 31.78 0.20 -1.10 16 14 C 0.09 1.66 6.48 86.72 0.56 2.22 16 15 N -0.62 -17.28 3.33 -811.82 -2.70 -19.98 16 16 C 0.54 20.92 7.87 87.66 0.69 21.61 16 17 O -0.57 -26.56 16.12 -3.03 -0.05 -26.61 16 18 C -0.10 -4.08 5.35 71.24 0.38 -3.70 16 19 S -0.18 -9.30 18.55 -56.49 -1.05 -10.35 16 20 C -0.53 -31.36 10.04 67.95 0.68 -30.67 16 21 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 22 C 0.05 2.78 5.50 84.86 0.47 3.25 16 23 N -0.92 -56.28 13.97 21.65 0.30 -55.97 16 24 Si 0.91 45.87 27.74 68.60 1.90 47.78 16 25 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.24 -12.05 6.74 99.48 0.67 -11.37 16 28 C 0.13 3.01 6.21 86.86 0.54 3.54 16 29 H 0.10 1.76 8.06 -2.91 -0.02 1.73 16 30 H 0.08 1.85 7.84 -2.91 -0.02 1.83 16 31 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.06 1.19 7.49 -2.39 -0.02 1.17 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.74 6.36 -2.39 -0.02 0.72 16 36 H 0.06 0.47 6.54 -2.39 -0.02 0.46 16 37 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.05 0.44 7.02 -2.38 -0.02 0.43 16 39 H 0.04 0.36 7.09 -2.38 -0.02 0.34 16 40 H 0.07 0.78 7.89 -2.39 -0.02 0.76 16 41 H 0.06 0.85 6.74 -2.38 -0.02 0.83 16 42 H 0.06 0.51 6.77 -2.39 -0.02 0.49 16 43 H 0.08 0.94 6.14 -2.39 -0.01 0.92 16 44 H 0.09 0.86 8.04 -2.39 -0.02 0.84 16 45 H 0.11 0.78 8.14 -2.39 -0.02 0.77 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 49 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 50 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 51 H 0.06 1.51 8.00 -2.39 -0.02 1.49 16 52 H 0.05 1.59 8.04 -2.39 -0.02 1.57 16 Total: -1.00 -74.50 418.28 2.82 -71.69 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.82 Total: 14.99 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 7.14 Total: -10.98 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -5.96 Total: -86.52 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.78 kcal Atomic # 16 Polarization: -9.30 SS G_CDS: -1.05 Total: -10.35 kcal Total: -74.50 2.82 -71.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714894128.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.325 kcal (2) G-P(sol) polarization free energy of solvation -74.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds