Wall clock time and date at job start Sat Apr 11 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00050 * 2 1 4 4 C 1.52998 * 109.47455 * 125.00104 * 3 2 1 5 5 C 1.52997 * 109.47359 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47088 * 54.99755 * 5 4 3 7 7 C 1.52998 * 109.47170 * 175.00157 * 5 4 3 8 8 N 1.46902 * 109.46992 * 295.00007 * 5 4 3 9 9 C 1.46896 * 111.00200 * 298.95347 * 8 5 4 10 10 C 1.46907 * 110.99688 * 174.99977 * 8 5 4 11 11 C 1.53002 * 109.46937 * 284.24027 * 10 8 5 12 12 H 1.09003 * 110.88448 * 58.99271 * 11 10 8 13 13 C 1.55158 * 111.00036 * 182.86815 * 11 10 8 14 14 C 1.54370 * 102.91776 * 153.54919 * 13 11 10 15 15 N 1.47025 * 107.29254 * 337.86254 * 14 13 11 16 16 C 1.34771 * 125.65102 * 178.94042 * 15 14 13 17 17 O 1.21279 * 119.99781 * 179.97438 * 16 15 14 18 18 C 1.50699 * 119.99912 * 359.96248 * 16 15 14 19 19 S 1.81000 * 109.46703 * 179.97438 * 18 16 15 20 20 C 1.76208 * 99.99874 * 180.02562 * 19 18 16 21 21 H 1.07995 * 119.99903 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00225 * 179.97438 * 20 19 18 23 23 N 1.31633 * 120.00035 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00127 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47020 * 60.00055 * 24 22 20 26 26 H 1.48500 * 109.46983 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47219 * 299.99845 * 24 22 20 28 28 C 1.47431 * 108.69771 * 358.90646 * 15 14 13 29 29 H 1.07993 * 119.99960 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99802 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99802 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47215 * 4.99789 * 3 2 1 33 33 H 1.09004 * 109.47156 * 245.00526 * 3 2 1 34 34 H 1.09003 * 109.46780 * 59.99933 * 4 3 2 35 35 H 1.08994 * 109.46758 * 300.00160 * 4 3 2 36 36 H 1.08998 * 109.46844 * 300.00216 * 7 5 4 37 37 H 1.08999 * 109.47012 * 179.97438 * 7 5 4 38 38 H 1.09003 * 109.47442 * 59.99815 * 7 5 4 39 39 H 1.08996 * 109.47132 * 64.15963 * 9 8 5 40 40 H 1.08998 * 109.47128 * 184.16296 * 9 8 5 41 41 H 1.09003 * 109.46981 * 304.16130 * 9 8 5 42 42 H 1.08996 * 109.47394 * 44.24629 * 10 8 5 43 43 H 1.09002 * 109.46879 * 164.24697 * 10 8 5 44 44 H 1.08997 * 110.72550 * 271.94166 * 13 11 10 45 45 H 1.08999 * 110.72150 * 35.22082 * 13 11 10 46 46 H 1.09003 * 109.90476 * 218.42460 * 14 13 11 47 47 H 1.09003 * 109.84698 * 97.27151 * 14 13 11 48 48 H 1.08994 * 109.47021 * 299.99663 * 18 16 15 49 49 H 1.08995 * 109.47437 * 60.00191 * 18 16 15 50 50 H 0.96999 * 120.00010 * 180.02562 * 23 22 20 51 51 H 1.08997 * 110.36289 * 265.28864 * 28 15 14 52 52 H 1.09001 * 110.36128 * 142.96418 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8005 2.6578 1.1812 6 1 3.0925 3.4866 1.1809 7 6 4.6802 2.7389 2.4303 8 7 4.6451 2.7350 -0.0183 9 6 5.6302 1.6455 -0.0395 10 6 5.3054 4.0438 -0.1139 11 6 4.2930 5.0932 -0.5773 12 1 3.4545 5.1570 0.1162 13 6 4.9704 6.4771 -0.7597 14 6 4.0766 7.1625 -1.8152 15 7 3.3710 6.1001 -2.5467 16 6 2.4784 6.2889 -3.5386 17 8 1.9557 5.3342 -4.0738 18 6 2.1295 7.6861 -3.9826 19 16 0.9134 7.6079 -5.3209 20 6 0.6945 9.3276 -5.6363 21 1 1.2447 10.0566 -5.0599 22 6 -0.1850 9.7454 -6.6254 23 7 -0.8560 8.8569 -7.3275 24 14 -0.4176 11.5685 -6.9592 25 1 0.8812 12.1685 -7.3573 26 1 -1.4035 11.7492 -8.0549 27 1 -0.9159 12.2371 -5.7304 28 6 3.8023 4.7941 -2.0158 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5065 1.0920 35 1 2.4773 1.2356 2.1129 36 1 4.0536 2.6816 3.3203 37 1 5.2259 3.6825 2.4298 38 1 5.3883 1.9102 2.4306 39 1 5.1127 0.6891 -0.1128 40 1 6.2896 1.7687 -0.8987 41 1 6.2194 1.6706 0.8772 42 1 5.6985 4.3247 0.8632 43 1 6.1235 3.9864 -0.8319 44 1 4.9623 7.0368 0.1756 45 1 5.9882 6.3621 -1.1327 46 1 4.6925 7.7407 -2.5041 47 1 3.3557 7.8149 -1.3223 48 1 1.7108 8.2402 -3.1426 49 1 3.0285 8.1895 -4.3380 50 1 -1.4704 9.1488 -8.0190 51 1 4.6160 4.3899 -2.6179 52 1 2.9637 4.0981 -1.9935 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714894130.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:24 Heat of formation + Delta-G solvation = -39.470144 kcal Electronic energy + Delta-G solvation = -27624.278330 eV Core-core repulsion = 23942.357388 eV Total energy + Delta-G solvation = -3681.920942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.11370 -39.88902 -38.27564 -36.15633 -34.59396 -33.79203 -32.26056 -30.83359 -30.10949 -29.80083 -27.75495 -27.16326 -25.75046 -24.50881 -23.44995 -21.61570 -20.69065 -20.63653 -19.92243 -19.53794 -18.01301 -17.57927 -17.18996 -16.88829 -16.62951 -16.23999 -16.13591 -15.72944 -15.43600 -14.98584 -14.86004 -14.67589 -14.53000 -14.38805 -14.18194 -13.81552 -13.68659 -13.44726 -13.30802 -13.16684 -13.05621 -12.86677 -12.82094 -12.68226 -12.63385 -12.48419 -12.22415 -12.06303 -11.91288 -11.82743 -11.72103 -11.65892 -11.36999 -11.17841 -11.13292 -10.94867 -10.29601 -10.18115 -9.65436 -9.03600 -8.69339 -8.34827 -6.14218 1.24135 1.43111 1.43965 1.44973 1.55294 1.57694 2.13925 2.27242 2.97603 2.98918 3.25990 3.61107 3.67279 3.76541 3.86155 3.98645 4.11799 4.19560 4.23473 4.26089 4.34346 4.38298 4.43133 4.46369 4.49221 4.56806 4.60876 4.65700 4.72808 4.76904 4.79697 4.80793 4.91642 4.94641 4.97220 5.01692 5.03132 5.09317 5.15359 5.20726 5.29539 5.34226 5.40403 5.41273 5.46095 5.47306 5.77796 5.93775 6.19008 6.25357 6.27688 6.43841 7.05615 7.13821 8.74397 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014376 B = 0.002289 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.162679 B =12227.569956 C =13610.662790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.086 4.086 4 C -0.098 4.098 5 C 0.079 3.921 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.548 5.548 9 C 0.020 3.980 10 C 0.068 3.932 11 C -0.082 4.082 12 H 0.079 0.921 13 C -0.112 4.112 14 C 0.089 3.911 15 N -0.620 5.620 16 C 0.542 3.458 17 O -0.570 6.570 18 C -0.118 4.118 19 S -0.153 6.153 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.001 2.999 25 H -0.261 1.261 26 H -0.278 1.278 27 H -0.261 1.261 28 C 0.125 3.875 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.104 0.896 49 H 0.105 0.895 50 H 0.272 0.728 51 H 0.063 0.937 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.293 -11.626 24.459 32.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.173 4.173 3 C -0.123 4.123 4 C -0.135 4.135 5 C -0.029 4.029 6 H 0.090 0.910 7 C -0.240 4.240 8 N -0.271 5.271 9 C -0.128 4.128 10 C -0.060 4.060 11 C -0.102 4.102 12 H 0.097 0.903 13 C -0.150 4.150 14 C -0.033 4.033 15 N -0.355 5.355 16 C 0.330 3.670 17 O -0.449 6.449 18 C -0.269 4.269 19 S 0.074 5.926 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.185 1.185 26 H -0.203 1.203 27 H -0.186 1.186 28 C 0.003 3.997 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.136 0.864 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.126 0.874 45 H 0.112 0.888 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.123 0.877 49 H 0.123 0.877 50 H 0.080 0.920 51 H 0.081 0.919 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.061 -13.116 23.072 31.021 hybrid contribution 0.304 1.862 0.466 1.943 sum 16.365 -11.254 23.539 30.798 Atomic orbital electron populations 1.23974 0.96420 1.01982 1.02280 1.23168 0.96068 0.99108 0.98983 1.20629 0.97685 0.94224 0.99781 1.21543 0.97387 0.97083 0.97534 1.21733 0.94903 0.98236 0.88058 0.90984 1.22394 1.00857 1.02354 0.98431 1.62134 1.22996 1.03132 1.38878 1.22458 0.94622 0.94689 1.01008 1.22097 0.95047 0.87654 1.01249 1.22276 0.98795 0.95140 0.93942 0.90267 1.22691 0.98853 0.94467 0.98971 1.22370 0.95753 0.90335 0.94872 1.48552 1.41714 1.10129 1.35067 1.19797 0.78155 0.90176 0.78854 1.90682 1.53715 1.44181 1.56299 1.23287 1.03782 0.96871 1.02938 1.85613 1.52623 1.11818 1.42549 1.23152 1.30549 0.91498 1.24193 0.89905 1.26170 0.94098 1.04542 0.94414 1.70188 1.26183 1.36473 1.21984 0.84976 0.78584 0.75968 0.78285 1.18532 1.20333 1.18576 1.22156 0.98756 0.84129 0.94644 0.87629 0.89481 0.86435 0.93455 0.91221 0.90935 0.91384 0.91714 0.91844 0.91820 0.91331 0.91545 0.94143 0.91768 0.90032 0.87385 0.88803 0.90476 0.90747 0.87736 0.87659 0.91950 0.91921 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.96 14.32 67.78 0.97 -2.99 16 2 C -0.16 -2.80 9.52 25.64 0.24 -2.55 16 3 C -0.09 -1.61 5.54 29.85 0.17 -1.44 16 4 C -0.10 -1.32 4.48 30.59 0.14 -1.18 16 5 C 0.08 1.00 2.26 44.91 0.10 1.11 16 6 H 0.07 1.10 6.77 -2.39 -0.02 1.09 16 7 C -0.18 -1.67 8.55 71.98 0.62 -1.05 16 8 N -0.55 -7.43 3.92 -897.04 -3.51 -10.94 16 9 C 0.02 0.22 8.83 127.69 1.13 1.35 16 10 C 0.07 0.77 4.33 86.30 0.37 1.15 16 11 C -0.08 -1.26 3.06 -9.40 -0.03 -1.28 16 12 H 0.08 1.32 6.91 -2.39 -0.02 1.31 16 13 C -0.11 -1.31 6.42 31.80 0.20 -1.11 16 14 C 0.09 1.74 6.49 86.74 0.56 2.30 16 15 N -0.62 -18.47 3.33 -811.69 -2.70 -21.17 16 16 C 0.54 22.44 7.87 87.66 0.69 23.13 16 17 O -0.57 -29.12 16.12 -3.03 -0.05 -29.17 16 18 C -0.12 -5.03 5.35 71.24 0.38 -4.65 16 19 S -0.15 -8.88 20.57 -56.49 -1.16 -10.04 16 20 C -0.55 -31.93 9.50 67.95 0.65 -31.28 16 21 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 22 C 0.01 0.72 5.49 84.86 0.47 1.19 16 23 N -0.91 -57.11 13.22 21.65 0.29 -56.82 16 24 Si 1.00 44.13 29.55 68.60 2.03 46.15 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 28 C 0.13 3.16 6.17 86.85 0.54 3.70 16 29 H 0.11 1.69 8.06 -2.91 -0.02 1.66 16 30 H 0.09 1.78 7.84 -2.91 -0.02 1.75 16 31 H 0.12 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.05 1.02 7.79 -2.39 -0.02 1.00 16 33 H 0.07 1.54 7.75 -2.39 -0.02 1.52 16 34 H 0.07 0.87 6.26 -2.39 -0.01 0.86 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.06 0.53 6.25 -2.39 -0.01 0.52 16 38 H 0.06 0.55 6.30 -2.39 -0.02 0.53 16 39 H 0.07 0.79 6.44 -2.39 -0.02 0.78 16 40 H 0.07 0.73 7.88 -2.39 -0.02 0.71 16 41 H 0.04 0.36 6.06 -2.39 -0.01 0.34 16 42 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 43 H 0.08 0.88 7.75 -2.39 -0.02 0.87 16 44 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.09 0.86 8.04 -2.39 -0.02 0.84 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.10 4.08 8.14 -2.40 -0.02 4.06 16 49 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 50 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 51 H 0.06 1.58 8.02 -2.39 -0.02 1.56 16 52 H 0.05 1.62 8.04 -2.39 -0.02 1.60 16 Total: -1.00 -78.43 419.41 2.95 -75.48 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.87 Total: 20.14 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 7.19 Total: -13.63 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -5.93 Total: -88.94 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.05 Total: -29.17 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal Total: -78.43 2.95 -75.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714894130.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.015 kcal (2) G-P(sol) polarization free energy of solvation -78.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds