Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47263 * 2 1 4 4 C 1.53006 * 109.46923 * 119.99604 * 2 1 3 5 5 C 1.53001 * 109.46923 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47080 * 300.00351 * 5 4 2 7 7 C 1.53003 * 109.47250 * 60.00256 * 6 5 4 8 8 H 1.09000 * 109.47161 * 59.99914 * 7 6 5 9 9 C 1.53001 * 109.46955 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47499 * 294.99695 * 9 7 6 11 11 N 1.46894 * 109.47464 * 180.02562 * 10 9 7 12 12 C 1.47963 * 110.99990 * 170.00064 * 11 10 9 13 13 C 1.53934 * 86.17970 * 222.41740 * 12 11 10 14 14 N 1.46499 * 113.73481 * 138.07919 * 13 12 11 15 15 C 1.34778 * 120.00278 * 154.99696 * 14 13 12 16 16 O 1.21278 * 119.99748 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00209 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31630 * 119.99849 * 180.27695 * 21 19 18 23 23 Si 1.86800 * 120.00065 * 0.28024 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99557 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00077 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99899 * 23 21 19 27 27 C 1.47955 * 111.00091 * 70.64066 * 11 10 9 28 28 C 1.52995 * 109.46832 * 299.99376 * 7 6 5 29 29 H 1.09000 * 109.47263 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47288 * 300.00336 * 1 2 3 31 31 H 1.09005 * 109.46887 * 60.00312 * 1 2 3 32 32 H 1.08994 * 109.47187 * 300.00122 * 4 2 1 33 33 H 1.09000 * 109.46828 * 60.00129 * 4 2 1 34 34 H 1.09001 * 109.46745 * 60.00319 * 5 4 2 35 35 H 1.08995 * 109.47164 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.47305 * 299.99625 * 6 5 4 37 37 H 1.09003 * 109.47026 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.47023 * 174.99703 * 9 7 6 39 39 H 1.08999 * 109.47172 * 54.99802 * 9 7 6 40 40 H 1.09003 * 109.46977 * 59.99980 * 10 9 7 41 41 H 1.08999 * 109.46996 * 300.00214 * 10 9 7 42 42 H 1.09003 * 113.75709 * 108.10091 * 12 11 10 43 43 H 1.08993 * 113.76086 * 336.73403 * 12 11 10 44 44 H 1.09006 * 113.73283 * 269.25743 * 13 12 11 45 45 H 0.97000 * 119.99972 * 335.00052 * 14 13 12 46 46 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 47 47 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 48 48 H 0.97005 * 119.99878 * 180.02562 * 22 21 19 49 49 H 1.09001 * 113.76011 * 23.26807 * 27 11 10 50 50 H 1.09000 * 113.76035 * 251.90298 * 27 11 10 51 51 H 1.09002 * 109.46775 * 179.97438 * 28 7 6 52 52 H 1.09000 * 109.47686 * 300.00216 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5700 -0.7206 1.2497 6 6 4.0805 -1.4415 0.0005 7 6 3.5706 -0.7202 -1.2488 8 1 3.9335 0.3075 -1.2486 9 6 4.0816 -1.4408 -2.4980 10 6 5.6064 -1.3318 -2.5619 11 7 6.0970 -2.0231 -3.7615 12 6 7.5316 -1.7399 -3.9873 13 6 7.1627 -1.5922 -5.4744 14 7 7.8221 -0.4638 -6.1363 15 6 8.0168 -0.4849 -7.4698 16 8 7.6457 -1.4377 -8.1218 17 6 8.6957 0.6756 -8.1506 18 16 8.8076 0.3510 -9.9277 19 6 9.6170 1.8238 -10.4573 20 1 9.8825 2.5832 -9.7366 21 6 9.9191 2.0053 -11.7998 22 7 10.5287 3.1031 -12.1947 23 14 9.4606 0.6917 -13.0463 24 1 8.0983 0.9622 -13.5720 25 1 10.4359 0.7097 -14.1659 26 1 9.4828 -0.6411 -12.3917 27 6 5.7366 -1.2777 -4.9877 28 6 2.0406 -0.7209 -1.2492 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6766 -0.2073 2.1392 33 1 1.6766 -1.7488 1.2494 34 1 3.9329 0.3072 1.2499 35 1 3.9333 -1.2348 2.1394 36 1 3.7176 -2.4693 0.0002 37 1 5.1705 -1.4415 0.0009 38 1 3.6471 -0.9814 -3.3858 39 1 3.7940 -2.4913 -2.4548 40 1 6.0410 -1.7912 -1.6740 41 1 5.8940 -0.2813 -2.6051 42 1 8.1846 -2.5874 -3.7789 43 1 7.8744 -0.8138 -3.5258 44 1 7.2402 -2.5208 -6.0400 45 1 8.1187 0.2984 -5.6149 46 1 9.6975 0.8021 -7.7402 47 1 8.1171 1.5840 -7.9832 48 1 10.7395 3.2302 -13.1330 49 1 5.5544 -0.2163 -4.8189 50 1 4.9554 -1.7558 -5.5786 51 1 1.6773 -0.2067 -2.1390 52 1 1.6776 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714928408.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = -63.724855 kcal Electronic energy + Delta-G solvation = -26517.920506 eV Core-core repulsion = 22834.947801 eV Total energy + Delta-G solvation = -3682.972705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54804 -40.18965 -39.63371 -35.70952 -34.67854 -34.53340 -32.78915 -31.44604 -30.09614 -27.87228 -27.34393 -27.26733 -26.56296 -23.46821 -22.87941 -21.84650 -21.22264 -20.92745 -20.61064 -19.83592 -18.03647 -17.72460 -17.09667 -16.74928 -16.58669 -16.23737 -15.99708 -15.91512 -15.44741 -15.14588 -15.11147 -14.88741 -14.70584 -14.54179 -14.06806 -13.91317 -13.78351 -13.63055 -13.34500 -13.25157 -13.02991 -12.92583 -12.79032 -12.68777 -12.60990 -12.43026 -12.28789 -11.87936 -11.84454 -11.83903 -11.65859 -11.49673 -11.28519 -11.17099 -11.06987 -10.80093 -10.76601 -10.53284 -10.15445 -9.84050 -8.99527 -8.51544 -6.22291 0.99047 1.31569 1.46962 1.52693 1.55652 2.17205 2.25556 2.70285 2.86863 2.91093 3.46367 3.66808 3.76492 3.79561 3.84710 3.90770 4.07469 4.09960 4.18190 4.24099 4.27761 4.38248 4.41868 4.46939 4.48557 4.56271 4.61185 4.65199 4.69786 4.73172 4.78925 4.80825 4.81373 4.92013 4.99154 5.02374 5.08184 5.12283 5.14758 5.21458 5.32895 5.33227 5.38262 5.43887 5.45856 5.48897 5.51802 5.66476 5.70670 6.02889 6.11392 6.44288 6.93822 7.17604 8.60725 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.001579 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.010653 B =17731.443541 C =18154.859646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.079 4.079 8 H 0.068 0.932 9 C -0.105 4.105 10 C 0.025 3.975 11 N -0.487 5.487 12 C 0.008 3.992 13 C 0.113 3.887 14 N -0.702 5.702 15 C 0.538 3.462 16 O -0.561 6.561 17 C -0.112 4.112 18 S -0.177 6.177 19 C -0.530 4.530 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.914 3.086 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.237 1.237 27 C -0.005 4.005 28 C -0.107 4.107 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.418 0.582 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.277 0.723 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.056 0.944 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.857 -7.809 31.600 36.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.084 0.916 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.098 4.098 8 H 0.086 0.914 9 C -0.143 4.143 10 C -0.103 4.103 11 N -0.210 5.210 12 C -0.121 4.121 13 C 0.007 3.993 14 N -0.356 5.356 15 C 0.323 3.677 16 O -0.439 6.439 17 C -0.263 4.263 18 S 0.050 5.950 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.135 4.135 28 C -0.144 4.144 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.255 0.745 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.086 0.914 49 H 0.102 0.898 50 H 0.100 0.900 51 H 0.075 0.925 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.618 -9.948 30.514 36.141 hybrid contribution 0.788 2.271 -0.023 2.404 sum -15.830 -7.677 30.491 35.203 Atomic orbital electron populations 1.21829 0.95099 1.01801 1.01773 1.21127 0.95555 0.99407 0.94933 0.91589 1.21590 0.95626 1.00490 0.97365 1.21535 0.95560 1.00748 0.97850 1.21612 1.00457 0.99100 0.93826 1.21079 0.95278 0.99384 0.94093 0.91379 1.21502 0.94144 1.00958 0.97674 1.22727 0.96391 0.97153 0.94021 1.68508 1.05255 1.45252 1.01942 1.24382 0.92130 1.03105 0.92468 1.22976 0.92594 0.90542 0.93187 1.45760 1.60971 1.22642 1.06214 1.20011 0.77834 0.86814 0.82996 1.90696 1.51477 1.36403 1.65340 1.23282 1.05162 1.00626 0.97187 1.84745 1.78434 1.28050 1.03809 1.22468 1.43930 1.04194 0.97119 0.91894 1.25553 0.93424 0.97413 0.99518 1.70016 1.40424 1.27110 1.17890 0.85876 0.79374 0.81339 0.79836 1.18732 1.18341 1.16088 1.24430 0.97734 0.98692 0.92648 1.21609 0.94824 1.00514 0.97496 0.92780 0.92356 0.92853 0.91829 0.92270 0.92080 0.91655 0.92355 0.91555 0.92706 0.91994 0.89576 0.93440 0.87877 0.88612 0.88241 0.74486 0.86667 0.86768 0.91381 0.89772 0.90014 0.92476 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.19 71.98 0.66 -0.74 16 2 C -0.09 -0.92 2.72 -10.79 -0.03 -0.95 16 3 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 4 C -0.11 -1.05 5.20 30.60 0.16 -0.89 16 5 C -0.12 -1.07 5.92 30.59 0.18 -0.89 16 6 C -0.11 -1.09 4.96 30.59 0.15 -0.94 16 7 C -0.08 -0.85 2.19 -10.79 -0.02 -0.87 16 8 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 9 C -0.10 -1.33 4.75 30.59 0.15 -1.19 16 10 C 0.03 0.31 4.57 86.30 0.39 0.71 16 11 N -0.49 -7.87 6.26 -908.36 -5.69 -13.56 16 12 C 0.01 0.12 7.73 86.40 0.67 0.78 16 13 C 0.11 2.32 4.43 46.56 0.21 2.52 16 14 N -0.70 -15.48 5.36 -446.14 -2.39 -17.87 16 15 C 0.54 17.85 7.85 87.66 0.69 18.54 16 16 O -0.56 -23.68 15.46 -3.02 -0.05 -23.73 16 17 C -0.11 -4.07 6.16 71.23 0.44 -3.63 16 18 S -0.18 -8.86 18.54 -56.49 -1.05 -9.91 16 19 C -0.53 -30.64 10.04 67.96 0.68 -29.96 16 20 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 21 C 0.05 2.71 5.50 84.86 0.47 3.18 16 22 N -0.92 -55.58 13.97 21.65 0.30 -55.28 16 23 Si 0.91 44.92 27.74 68.60 1.90 46.82 16 24 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 26 H -0.24 -11.65 6.73 99.48 0.67 -10.98 16 27 C -0.01 -0.09 6.90 86.41 0.60 0.50 16 28 C -0.11 -1.19 4.49 30.59 0.14 -1.05 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.60 6.56 -2.39 -0.02 0.59 16 38 H 0.05 0.79 7.54 -2.39 -0.02 0.77 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.97 6.56 -2.39 -0.02 0.96 16 41 H 0.05 0.53 7.69 -2.39 -0.02 0.52 16 42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 0.96 7.77 -2.39 -0.02 0.94 16 44 H 0.10 2.62 7.46 -2.38 -0.02 2.60 16 45 H 0.42 6.30 8.73 -92.71 -0.81 5.49 16 46 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 47 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 48 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 49 H 0.08 1.35 7.78 -2.39 -0.02 1.34 16 50 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -70.84 415.75 -1.42 -72.26 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.03 Total: 16.14 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 5.52 Total: -14.88 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -7.78 Total: -86.71 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.90 Total: 46.82 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.91 kcal Total: -70.84 -1.42 -72.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714928408.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.537 kcal (2) G-P(sol) polarization free energy of solvation -70.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds