Wall clock time and date at job start Sat Apr 11 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47375 * 2 1 4 4 C 1.53003 * 109.47275 * 240.00247 * 2 1 3 5 5 C 1.53002 * 109.46833 * 299.99926 * 4 2 1 6 6 C 1.52997 * 109.47227 * 299.99728 * 5 4 2 7 7 C 1.53002 * 109.47192 * 60.00034 * 6 5 4 8 8 H 1.09002 * 109.47097 * 59.99849 * 7 6 5 9 9 C 1.52992 * 109.47278 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47482 * 295.00291 * 9 7 6 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.47477 * 111.00047 * 265.97286 * 11 10 9 13 13 C 1.53513 * 87.92932 * 221.29743 * 12 11 10 14 14 N 1.46498 * 114.16973 * 139.67507 * 13 12 11 15 15 C 1.34778 * 120.00298 * 111.15811 * 14 13 12 16 16 O 1.21276 * 120.00158 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99886 * 179.97438 * 15 14 13 18 18 S 1.81004 * 109.47062 * 179.97438 * 17 15 14 19 19 C 1.76205 * 100.00002 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00164 * 180.02562 * 19 18 17 22 22 N 1.31637 * 119.99394 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00254 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47044 * 89.99442 * 23 21 19 25 25 H 1.48498 * 109.47133 * 209.99348 * 23 21 19 26 26 H 1.48500 * 109.46767 * 329.99733 * 23 21 19 27 27 C 1.47481 * 111.00017 * 169.99694 * 11 10 9 28 28 C 1.52997 * 109.47276 * 120.00219 * 2 1 3 29 29 H 1.08998 * 109.47375 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46912 * 300.00177 * 1 2 3 31 31 H 1.09004 * 109.47120 * 59.99860 * 1 2 3 32 32 H 1.09000 * 109.46966 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47134 * 59.99901 * 4 2 1 34 34 H 1.09001 * 109.46896 * 179.97438 * 5 4 2 35 35 H 1.09000 * 109.47254 * 60.00287 * 5 4 2 36 36 H 1.09000 * 109.47459 * 300.00433 * 6 5 4 37 37 H 1.08998 * 109.47097 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47103 * 175.00044 * 9 7 6 39 39 H 1.08998 * 109.46862 * 55.00856 * 9 7 6 40 40 H 1.09002 * 109.47153 * 59.99783 * 10 9 7 41 41 H 1.09001 * 109.46832 * 299.99974 * 10 9 7 42 42 H 1.09000 * 113.47846 * 336.05901 * 12 11 10 43 43 H 1.08998 * 113.47506 * 106.53321 * 12 11 10 44 44 H 1.09007 * 114.34358 * 272.35775 * 13 12 11 45 45 H 0.97004 * 119.99612 * 291.14816 * 14 13 12 46 46 H 1.09001 * 109.47178 * 299.99873 * 17 15 14 47 47 H 1.09000 * 109.47308 * 59.99942 * 17 15 14 48 48 H 0.97002 * 119.99338 * 180.02562 * 22 21 19 49 49 H 1.09000 * 113.47744 * 253.47034 * 27 11 10 50 50 H 1.08996 * 113.47276 * 23.88258 * 27 11 10 51 51 H 1.09001 * 109.47272 * 299.99952 * 28 2 1 52 52 H 1.09000 * 109.47459 * 180.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0400 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2492 8 1 0.4400 -2.1638 1.2492 9 6 2.0395 -2.8854 2.4984 10 6 1.4291 -4.2868 2.5625 11 7 1.9188 -4.9799 3.7616 12 6 3.1030 -5.8019 3.4504 13 6 2.5133 -6.8940 4.3538 14 7 2.6737 -8.2540 3.8336 15 6 3.5027 -9.1186 4.4516 16 8 4.1163 -8.7704 5.4381 17 6 3.6672 -10.5178 3.9168 18 16 4.8381 -11.4269 4.9554 19 6 4.8406 -12.9812 4.1253 20 1 4.2270 -13.1261 3.2485 21 6 5.6305 -14.0196 4.5988 22 7 6.3781 -13.8431 5.6678 23 14 5.6327 -15.6676 3.7192 24 1 6.6893 -15.6703 2.6758 25 1 5.9013 -16.7510 4.6986 26 1 4.3092 -15.8912 3.0840 27 6 1.1766 -6.2342 3.9872 28 6 2.0400 -0.7213 1.2492 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.1300 -0.7216 -1.2490 33 1 1.6767 -0.2073 -2.1393 34 1 1.8930 -2.6774 -2.1395 35 1 0.4400 -2.1637 -1.2493 36 1 3.1300 -2.8850 0.0000 37 1 1.6763 -3.9125 0.0001 38 1 1.7512 -2.3225 3.3861 39 1 3.1258 -2.9638 2.4549 40 1 1.7174 -4.8497 1.6747 41 1 0.3428 -4.2082 2.6060 42 1 3.1661 -6.0931 2.4019 43 1 4.0348 -5.3816 3.8287 44 1 2.7833 -6.8010 5.4058 45 1 2.1831 -8.5324 3.0445 46 1 2.7028 -11.0258 3.9255 47 1 4.0457 -10.4743 2.8956 48 1 6.9304 -14.5687 5.9986 49 1 0.4760 -6.1804 4.8204 50 1 0.7249 -6.6402 3.0821 51 1 1.6767 -0.2075 2.1392 52 1 3.1300 -0.7209 1.2494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714928410.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:33 Heat of formation + Delta-G solvation = -57.163021 kcal Electronic energy + Delta-G solvation = -26615.671390 eV Core-core repulsion = 22932.983228 eV Total energy + Delta-G solvation = -3682.688162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65124 -40.32887 -39.79947 -35.67410 -34.58514 -34.45764 -32.39982 -31.41819 -30.05137 -27.70591 -27.61002 -27.06263 -26.68439 -23.65024 -23.11850 -21.86156 -21.36660 -21.23527 -19.78024 -19.48181 -17.97039 -17.66337 -16.87817 -16.83922 -16.58360 -16.43992 -16.06846 -15.80802 -15.55192 -15.25645 -15.02088 -14.71284 -14.63696 -14.35853 -14.03964 -13.89821 -13.68358 -13.57524 -13.37884 -13.16040 -13.00932 -12.91275 -12.88108 -12.61186 -12.44461 -12.30040 -12.15477 -11.92817 -11.85979 -11.81064 -11.69740 -11.46372 -11.13713 -11.05656 -11.01368 -10.79868 -10.71750 -10.26844 -10.10500 -9.89644 -8.66147 -8.34105 -6.12238 1.27105 1.43021 1.47428 1.57362 1.57897 2.20589 2.28407 2.99923 3.00185 3.33162 3.44822 3.71337 3.78974 3.79580 3.88879 3.93690 3.99557 4.12069 4.21540 4.31344 4.32091 4.36877 4.43036 4.51188 4.51636 4.55608 4.58412 4.64987 4.70689 4.76125 4.77687 4.78777 4.85841 4.90107 4.95591 5.01826 5.10955 5.15715 5.19711 5.22491 5.28191 5.33298 5.42466 5.43443 5.44210 5.46822 5.50210 5.56222 5.70194 6.04026 6.20375 6.48920 7.07273 7.23395 8.75101 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.001558 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.476141 B =17966.296729 C =18601.538690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.114 4.114 7 C -0.079 4.079 8 H 0.077 0.923 9 C -0.101 4.101 10 C 0.023 3.977 11 N -0.480 5.480 12 C -0.010 4.010 13 C 0.112 3.888 14 N -0.700 5.700 15 C 0.537 3.463 16 O -0.564 6.564 17 C -0.129 4.129 18 S -0.153 6.153 19 C -0.547 4.547 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.258 1.258 27 C 0.005 3.995 28 C -0.108 4.108 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.418 0.582 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.271 0.729 49 H 0.097 0.903 50 H 0.097 0.903 51 H 0.061 0.939 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.082 26.941 -16.236 35.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.152 4.152 7 C -0.098 4.098 8 H 0.095 0.905 9 C -0.139 4.139 10 C -0.106 4.106 11 N -0.202 5.202 12 C -0.140 4.140 13 C 0.006 3.994 14 N -0.354 5.354 15 C 0.323 3.677 16 O -0.442 6.442 17 C -0.281 4.281 18 S 0.074 5.926 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.181 1.181 27 C -0.125 4.125 28 C -0.145 4.145 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.256 0.744 46 H 0.130 0.870 47 H 0.129 0.871 48 H 0.080 0.920 49 H 0.115 0.885 50 H 0.115 0.885 51 H 0.079 0.921 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.954 28.014 -13.990 34.701 hybrid contribution -0.407 -1.948 -2.118 2.906 sum -15.361 26.066 -16.108 34.276 Atomic orbital electron populations 1.21926 0.94944 1.02181 1.01585 1.21086 0.96253 0.98924 0.94727 0.91448 1.21565 1.00243 0.95821 0.97602 1.21562 1.01140 0.95506 0.97562 1.21623 1.00280 0.99011 0.94263 1.21113 1.00628 0.94406 0.93678 0.90477 1.21440 0.99865 0.94654 0.97897 1.22791 1.00583 0.95952 0.91225 1.68845 1.04230 1.14767 1.32372 1.24433 0.96681 0.93033 0.99867 1.22565 0.97906 0.79758 0.99205 1.45660 1.45789 1.11861 1.32086 1.20122 0.78448 0.86407 0.82757 1.90699 1.47333 1.78691 1.27492 1.23379 1.04968 0.95269 1.04452 1.85615 1.55926 1.10689 1.40366 1.23217 1.31832 0.98015 1.16399 0.89814 1.26129 0.93872 1.03374 0.95761 1.70192 1.26553 1.34468 1.23573 0.84950 0.79290 0.75919 0.77799 1.19338 1.20358 1.18140 1.24227 0.95826 0.89327 1.03098 1.21578 1.00170 0.95125 0.97675 0.91958 0.92837 0.92652 0.92602 0.91778 0.92140 0.91363 0.92902 0.91766 0.92000 0.93119 0.92564 0.89993 0.89483 0.90684 0.88204 0.74448 0.87016 0.87069 0.92016 0.88451 0.88511 0.92066 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.50 71.98 0.61 -0.69 16 2 C -0.09 -0.90 3.19 -10.80 -0.03 -0.93 16 3 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 4 C -0.11 -1.13 5.45 30.60 0.17 -0.96 16 5 C -0.12 -1.17 5.65 30.59 0.17 -0.99 16 6 C -0.11 -1.22 4.96 30.59 0.15 -1.07 16 7 C -0.08 -0.85 1.91 -10.80 -0.02 -0.87 16 8 H 0.08 0.78 6.43 -2.39 -0.02 0.77 16 9 C -0.10 -1.34 5.01 30.59 0.15 -1.19 16 10 C 0.02 0.29 4.57 86.30 0.39 0.69 16 11 N -0.48 -8.31 6.33 -927.90 -5.88 -14.19 16 12 C -0.01 -0.19 7.52 83.58 0.63 0.43 16 13 C 0.11 2.50 4.60 45.45 0.21 2.71 16 14 N -0.70 -16.67 5.39 -441.71 -2.38 -19.04 16 15 C 0.54 19.32 7.85 87.66 0.69 20.01 16 16 O -0.56 -26.09 15.45 -3.02 -0.05 -26.13 16 17 C -0.13 -4.99 6.16 71.23 0.44 -4.55 16 18 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 19 C -0.55 -31.03 9.50 67.95 0.65 -30.38 16 20 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.76 5.49 84.86 0.47 1.22 16 22 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16 23 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 27 C 0.00 0.07 7.45 83.58 0.62 0.69 16 28 C -0.11 -1.19 4.73 30.59 0.14 -1.05 16 29 H 0.06 0.54 4.81 -2.39 -0.01 0.53 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.44 8.14 -2.38 -0.02 0.43 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.61 6.43 -2.39 -0.02 0.60 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.06 0.65 6.56 -2.39 -0.02 0.64 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.66 5.72 -2.39 -0.01 0.64 16 41 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 42 H 0.09 1.44 7.42 -2.39 -0.02 1.42 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.10 2.88 7.45 -2.38 -0.02 2.87 16 45 H 0.42 6.73 8.75 -92.71 -0.81 5.92 16 46 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 47 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 48 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 49 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.10 1.03 7.90 -2.39 -0.02 1.01 16 51 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -73.98 412.19 -1.63 -75.61 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.08 Total: 20.64 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 5.44 Total: -16.93 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -7.97 Total: -88.91 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -73.98 -1.63 -75.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714928410.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.450 kcal (2) G-P(sol) polarization free energy of solvation -73.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds