Wall clock time and date at job start Sat Apr 11 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.49768 * 2 1 4 4 C 1.53197 * 109.49467 * 239.93232 * 2 1 3 5 5 N 1.46925 * 108.77714 * 294.68413 * 4 2 1 6 6 C 1.34776 * 120.62514 * 126.37040 * 5 4 2 7 7 O 1.21276 * 120.00692 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99672 * 179.97438 * 6 5 4 9 9 S 1.80996 * 109.47303 * 179.97438 * 8 6 5 10 10 C 1.76195 * 100.00219 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00027 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00462 * 180.02562 * 10 9 8 13 13 N 1.31638 * 119.99715 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00317 * 180.02562 * 12 10 9 15 15 H 1.48489 * 109.47227 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46937 * 119.99885 * 14 12 10 17 17 H 1.48497 * 109.46852 * 239.99669 * 14 12 10 18 18 C 1.46921 * 118.73828 * 306.39297 * 5 4 2 19 19 C 1.53190 * 108.77902 * 53.61185 * 18 5 4 20 20 C 1.53040 * 109.30776 * 305.36296 * 19 18 5 21 21 H 1.09007 * 109.46513 * 301.34677 * 20 19 18 22 22 N 1.46906 * 109.46146 * 181.38783 * 20 19 18 23 23 C 1.46894 * 111.00106 * 84.93029 * 22 20 19 24 24 C 1.52998 * 109.47179 * 180.02562 * 23 22 20 25 25 C 1.54264 * 110.03216 * 292.90541 * 24 23 22 26 26 C 1.54959 * 104.16274 * 217.13653 * 25 24 23 27 27 C 1.54889 * 102.77885 * 37.88735 * 26 25 24 28 28 C 1.53875 * 110.03431 * 175.69070 * 24 23 22 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46998 * 300.06145 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.06436 * 1 2 3 32 32 H 1.09003 * 109.58099 * 54.47319 * 4 2 1 33 33 H 1.09002 * 109.58274 * 174.89732 * 4 2 1 34 34 H 1.09001 * 109.47137 * 300.00427 * 8 6 5 35 35 H 1.09005 * 109.47385 * 59.99949 * 8 6 5 36 36 H 0.96998 * 119.99874 * 179.97438 * 13 12 10 37 37 H 1.09009 * 109.58368 * 173.39661 * 18 5 4 38 38 H 1.08998 * 109.58605 * 293.81483 * 18 5 4 39 39 H 1.09000 * 109.49968 * 65.31013 * 19 18 5 40 40 H 1.08994 * 109.49755 * 185.38713 * 19 18 5 41 41 H 1.00901 * 110.99200 * 320.97748 * 22 20 19 42 42 H 1.09004 * 109.47003 * 300.00553 * 23 22 20 43 43 H 1.09000 * 109.47280 * 60.00139 * 23 22 20 44 44 H 1.09001 * 110.01685 * 54.29912 * 24 23 22 45 45 H 1.09000 * 110.48416 * 335.78945 * 25 24 23 46 46 H 1.09005 * 110.48556 * 98.42582 * 25 24 23 47 47 H 1.08999 * 110.72023 * 279.57117 * 26 25 24 48 48 H 1.09001 * 110.92676 * 156.29698 * 26 25 24 49 49 H 1.09000 * 110.48954 * 203.40516 * 27 26 25 50 50 H 1.09007 * 110.59607 * 80.81616 * 27 26 25 51 51 H 1.08995 * 110.03486 * 238.56900 * 28 24 23 52 52 H 1.09005 * 110.03223 * 0.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2498 5 7 1.6515 -2.1379 -1.1702 6 6 0.9739 -2.7212 -2.1787 7 8 0.6798 -2.0778 -3.1637 8 6 0.5817 -4.1731 -2.0823 9 16 -0.3102 -4.6579 -3.5808 10 6 -0.6370 -6.3488 -3.2089 11 1 -0.3001 -6.7709 -2.2736 12 6 -1.3274 -7.1386 -4.1178 13 7 -1.7384 -6.6240 -5.2576 14 14 -1.6744 -8.9311 -3.7232 15 1 -1.1130 -9.2618 -2.3889 16 1 -3.1416 -9.1606 -3.7131 17 1 -1.0453 -9.7956 -4.7537 18 6 2.0140 -2.9040 0.0300 19 6 1.5030 -2.1562 1.2654 20 6 2.0408 -0.7235 1.2481 21 1 3.1306 -0.7448 1.2350 22 7 1.5799 -0.0132 2.4486 23 6 2.4724 -0.2692 3.5869 24 6 1.9607 0.4851 4.8158 25 6 2.0929 2.0061 4.5952 26 6 2.4943 2.5576 5.9866 27 6 3.4513 1.4652 6.5250 28 6 2.8236 0.1412 6.0425 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8906 32 1 1.6007 -0.2725 -2.1390 33 1 3.1275 -0.6460 -1.2982 34 1 1.4775 -4.7853 -1.9781 35 1 -0.0611 -4.3190 -1.2142 36 1 -2.2206 -7.1760 -5.8930 37 1 1.5553 -3.8919 -0.0149 38 1 3.0979 -3.0044 0.0858 39 1 0.4132 -2.1358 1.2535 40 1 1.8476 -2.6638 2.1663 41 1 0.6279 -0.2616 2.6724 42 1 2.4927 -1.3381 3.7994 43 1 3.4786 0.0721 3.3437 44 1 0.9196 0.2246 5.0067 45 1 2.8706 2.2190 3.8617 46 1 1.1404 2.4296 4.2764 47 1 1.6196 2.6559 6.6295 48 1 3.0118 3.5123 5.8925 49 1 3.4898 1.4946 7.6139 50 1 4.4497 1.5893 6.1054 51 1 2.2013 -0.2855 6.8291 52 1 3.6073 -0.5628 5.7622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715002043.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:44 Heat of formation + Delta-G solvation = -77.789175 kcal Electronic energy + Delta-G solvation = -27729.505080 eV Core-core repulsion = 24045.922500 eV Total energy + Delta-G solvation = -3683.582579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44185 -39.67764 -38.77850 -36.06690 -34.59620 -34.04879 -32.18308 -30.93732 -29.79061 -29.37191 -27.82660 -27.39939 -25.60378 -24.12645 -23.60079 -21.46663 -21.34026 -20.61521 -19.81230 -19.29692 -18.20590 -16.97820 -16.92162 -16.85744 -16.77891 -16.41793 -15.86027 -15.71522 -15.54034 -15.40299 -15.14711 -14.70323 -14.47979 -14.34886 -14.15228 -14.02500 -13.67896 -13.47637 -13.19268 -13.13491 -12.92760 -12.74573 -12.69988 -12.61237 -12.46004 -12.04157 -11.93464 -11.86486 -11.82250 -11.79094 -11.70419 -11.47196 -11.41792 -11.32039 -11.17015 -11.10689 -10.83002 -10.27079 -9.66671 -9.21289 -8.68390 -8.35767 -6.14141 1.24972 1.40386 1.45215 1.56401 1.58753 2.11724 2.26219 2.98324 3.15622 3.24531 3.61232 3.74036 3.81105 3.84145 3.92591 3.94834 4.04414 4.11754 4.22698 4.23468 4.38917 4.41265 4.43351 4.52441 4.56823 4.65823 4.70525 4.72728 4.75702 4.80603 4.83164 4.85578 4.89963 4.91251 4.98811 5.02421 5.12917 5.14030 5.17884 5.19299 5.23073 5.31440 5.40619 5.43272 5.46998 5.53230 5.62440 5.63532 6.17472 6.18755 6.30375 6.51038 7.05402 7.16281 8.73733 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.002017 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.541017 B =13879.321044 C =14724.517293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 H 0.096 0.904 4 C 0.112 3.888 5 N -0.601 5.601 6 C 0.533 3.467 7 O -0.567 6.567 8 C -0.123 4.123 9 S -0.152 6.152 10 C -0.545 4.545 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.256 1.256 16 H -0.274 1.274 17 H -0.273 1.273 18 C 0.105 3.895 19 C -0.159 4.159 20 C 0.104 3.896 21 H 0.087 0.913 22 N -0.681 5.681 23 C 0.070 3.930 24 C -0.088 4.088 25 C -0.103 4.103 26 C -0.130 4.130 27 C -0.125 4.125 28 C -0.120 4.120 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.271 0.729 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.342 0.658 42 H 0.033 0.967 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.166 14.872 26.721 32.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 H 0.114 0.886 4 C -0.010 4.010 5 N -0.335 5.335 6 C 0.321 3.679 7 O -0.446 6.446 8 C -0.274 4.274 9 S 0.075 5.925 10 C -0.692 4.692 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.180 1.180 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.018 4.018 19 C -0.198 4.198 20 C -0.006 4.006 21 H 0.106 0.894 22 N -0.311 5.311 23 C -0.059 4.059 24 C -0.107 4.107 25 C -0.141 4.141 26 C -0.168 4.168 27 C -0.162 4.162 28 C -0.158 4.158 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.161 0.839 42 H 0.051 0.949 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.082 0.918 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.973 16.411 24.977 32.195 hybrid contribution -0.489 -2.609 0.867 2.792 sum 11.485 13.803 25.844 31.469 Atomic orbital electron populations 1.21738 0.95723 1.00718 1.01431 1.21386 0.95812 0.99992 0.92847 0.88601 1.21784 1.00240 0.79803 0.99200 1.48039 1.55604 1.11900 1.18000 1.20076 0.77029 0.88299 0.82535 1.90670 1.55596 1.65560 1.32757 1.23362 1.04362 0.95952 1.03722 1.85599 1.71606 1.12609 1.22661 1.23217 1.42694 0.95719 1.07620 0.89963 1.26142 0.94362 1.04605 0.94093 1.70196 1.36891 1.38556 1.09113 0.84900 0.78144 0.75962 0.78907 1.17958 1.19937 1.19886 1.21922 1.01600 0.95285 0.83010 1.22642 1.01733 0.97606 0.97858 1.21424 0.99602 0.89819 0.89778 0.89446 1.60553 1.06216 1.60576 1.03759 1.22110 0.96682 0.97472 0.89610 1.21743 0.99361 0.95704 0.93858 1.22240 1.01099 0.94287 0.96438 1.22567 0.99152 0.98299 0.96766 1.22355 0.98819 0.94550 1.00490 1.22174 0.99002 0.97755 0.96858 0.94382 0.90886 0.94626 0.91413 0.89689 0.87612 0.87828 0.91990 0.89677 0.89084 0.91753 0.89040 0.83949 0.94893 0.91091 0.91574 0.91959 0.92393 0.91818 0.91638 0.91523 0.91677 0.91760 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.46 71.98 0.61 -2.38 16 2 C -0.08 -1.45 2.91 -10.71 -0.03 -1.48 16 3 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.11 2.61 5.83 86.36 0.50 3.11 16 5 N -0.60 -16.14 2.41 -818.90 -1.97 -18.12 16 6 C 0.53 20.49 7.72 87.66 0.68 21.16 16 7 O -0.57 -27.15 15.27 -3.02 -0.05 -27.19 16 8 C -0.12 -5.01 4.50 71.24 0.32 -4.69 16 9 S -0.15 -8.57 20.57 -56.49 -1.16 -9.74 16 10 C -0.54 -31.29 9.50 67.95 0.65 -30.65 16 11 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 12 C 0.01 0.72 5.49 84.86 0.47 1.19 16 13 N -0.91 -56.30 13.22 21.65 0.29 -56.02 16 14 Si 1.00 43.69 29.55 68.60 2.03 45.71 16 15 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 C 0.10 1.96 6.34 86.36 0.55 2.51 16 19 C -0.16 -2.31 4.99 30.67 0.15 -2.16 16 20 C 0.10 1.42 2.13 44.94 0.10 1.51 16 21 H 0.09 1.09 7.80 -2.38 -0.02 1.07 16 22 N -0.68 -8.29 5.61 -491.42 -2.76 -11.05 16 23 C 0.07 0.73 4.53 86.30 0.39 1.12 16 24 C -0.09 -0.90 3.09 -10.07 -0.03 -0.94 16 25 C -0.10 -1.18 6.18 31.69 0.20 -0.99 16 26 C -0.13 -1.33 6.91 31.91 0.22 -1.11 16 27 C -0.12 -1.16 6.83 31.67 0.22 -0.94 16 28 C -0.12 -1.11 6.46 31.32 0.20 -0.91 16 29 H 0.04 0.95 5.97 -2.39 -0.01 0.93 16 30 H 0.07 1.32 7.25 -2.39 -0.02 1.31 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.99 7.01 -2.39 -0.02 1.97 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.11 3.91 7.94 -2.39 -0.02 3.89 16 35 H 0.10 3.85 7.69 -2.39 -0.02 3.84 16 36 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.08 1.70 5.93 -2.38 -0.01 1.68 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.13 6.33 -2.39 -0.02 1.12 16 40 H 0.09 1.02 7.42 -2.39 -0.02 1.00 16 41 H 0.34 4.27 7.76 -89.69 -0.70 3.57 16 42 H 0.03 0.33 7.41 -2.39 -0.02 0.31 16 43 H 0.07 0.78 7.94 -2.39 -0.02 0.76 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.80 7.77 -2.39 -0.02 0.78 16 46 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 51 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.07 0.59 7.67 -2.38 -0.02 0.57 16 Total: -1.00 -73.68 407.41 1.75 -71.93 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.19 Total: 20.09 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 5.18 Total: -15.62 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -4.45 Total: -85.18 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.05 Total: -27.19 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.74 kcal Total: -73.68 1.75 -71.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715002043.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.857 kcal (2) G-P(sol) polarization free energy of solvation -73.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds