Wall clock time and date at job start Sat Apr 11 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81398 * 102.99810 * 2 1 4 4 H 1.09004 * 109.47349 * 304.99362 * 3 2 1 5 5 C 1.52991 * 109.47464 * 65.00036 * 3 2 1 6 6 C 1.53002 * 109.46985 * 184.99921 * 3 2 1 7 7 C 1.50700 * 109.47084 * 64.99876 * 6 3 2 8 8 O 1.21286 * 120.00295 * 359.97438 * 7 6 3 9 9 N 1.34780 * 119.99948 * 179.72400 * 7 6 3 10 10 C 1.46930 * 120.64299 * 359.72089 * 9 7 6 11 11 C 1.53622 * 108.54030 * 126.32436 * 10 9 7 12 12 C 1.53049 * 109.25900 * 54.86572 * 11 10 9 13 13 C 1.53029 * 109.44092 * 58.57533 * 12 11 10 14 14 C 1.53186 * 109.33660 * 181.23121 * 13 12 11 15 15 N 1.46931 * 108.77737 * 305.37382 * 14 13 12 16 16 C 1.36939 * 120.64021 * 233.61566 * 15 14 13 17 17 H 1.08005 * 120.00101 * 152.31331 * 16 15 14 18 18 C 1.38815 * 119.99982 * 332.31272 * 16 15 14 19 19 N 1.31612 * 119.99818 * 342.59846 * 18 16 15 20 20 Si 1.86806 * 119.99940 * 162.59901 * 18 16 15 21 21 H 1.48495 * 109.46938 * 94.35069 * 20 18 16 22 22 H 1.48495 * 109.46861 * 214.35097 * 20 18 16 23 23 H 1.48496 * 109.46864 * 334.35205 * 20 18 16 24 24 C 1.46927 * 118.71681 * 53.63891 * 15 14 13 25 25 C 1.53044 * 109.38794 * 178.60043 * 12 11 10 26 26 C 1.53028 * 109.54773 * 298.56017 * 12 11 10 27 27 C 1.46931 * 120.64470 * 179.97438 * 9 7 6 28 28 H 1.08998 * 109.47294 * 299.99925 * 1 2 3 29 29 H 1.09002 * 109.47121 * 60.00415 * 1 2 3 30 30 H 1.08997 * 109.46942 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47446 * 59.99538 * 5 3 2 32 32 H 1.09003 * 109.47492 * 180.02562 * 5 3 2 33 33 H 1.09005 * 109.47216 * 299.99753 * 5 3 2 34 34 H 1.09000 * 109.47226 * 304.99595 * 6 3 2 35 35 H 1.08998 * 109.47063 * 184.99644 * 6 3 2 36 36 H 1.08995 * 109.58655 * 246.15490 * 10 9 7 37 37 H 1.08999 * 109.58695 * 6.58572 * 10 9 7 38 38 H 1.09002 * 109.62756 * 294.87030 * 11 10 9 39 39 H 1.08997 * 109.42618 * 174.73993 * 11 10 9 40 40 H 1.09001 * 109.49004 * 301.18739 * 13 12 11 41 41 H 1.09000 * 109.49240 * 61.27049 * 13 12 11 42 42 H 1.08999 * 109.58486 * 185.58799 * 14 13 12 43 43 H 1.09001 * 109.70338 * 65.22672 * 14 13 12 44 44 H 0.97002 * 119.99908 * 180.02562 * 19 18 16 45 45 H 1.09005 * 109.58598 * 186.56622 * 24 15 14 46 46 H 1.08994 * 109.70120 * 66.21511 * 24 15 14 47 47 H 1.08999 * 109.49521 * 298.68971 * 25 12 11 48 48 H 1.09002 * 109.49579 * 58.77956 * 25 12 11 49 49 H 1.08998 * 109.49392 * 301.34335 * 26 12 11 50 50 H 1.08995 * 109.49383 * 181.25908 * 26 12 11 51 51 H 1.09005 * 109.58621 * 353.41053 * 27 9 7 52 52 H 1.08994 * 109.58547 * 113.68619 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2541 -0.8419 5 6 1.7428 2.4016 1.3073 6 6 3.7370 1.9412 -0.1257 7 6 4.1919 1.4270 -1.4672 8 8 3.3841 0.9664 -2.2459 9 7 5.4958 1.4835 -1.8037 10 6 6.4848 2.0491 -0.8759 11 6 7.6069 1.0201 -0.6710 12 6 8.1801 0.6204 -2.0327 13 6 8.7100 1.8654 -2.7475 14 6 9.2551 1.4673 -4.1226 15 7 10.2523 0.4028 -3.9460 16 6 11.5103 0.5307 -4.4717 17 1 12.3439 0.0253 -4.0068 18 6 11.7141 1.3100 -5.6023 19 7 10.6944 1.6423 -6.3650 20 14 13.4358 1.8870 -6.0410 21 1 14.0464 0.9354 -7.0037 22 1 13.3637 3.2362 -6.6569 23 1 14.2658 1.9479 -4.8112 24 6 9.8736 -0.8018 -3.1948 25 6 9.3218 -0.3785 -1.8299 26 6 7.0824 -0.0259 -2.8806 27 6 5.9551 0.9857 -3.1076 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.2353 1.9150 2.1491 32 1 1.9876 3.4638 1.3071 33 1 0.6635 2.2779 1.3968 34 1 4.2339 1.3805 0.6660 35 1 3.9902 2.9976 -0.0367 36 1 6.8982 2.9657 -1.2967 37 1 6.0072 2.2661 0.0796 38 1 7.2076 0.1376 -0.1712 39 1 8.3948 1.4598 -0.0595 40 1 7.9012 2.5855 -2.8714 41 1 9.5083 2.3128 -2.1553 42 1 9.7228 2.3315 -4.5944 43 1 8.4408 1.1047 -4.7499 44 1 10.8368 2.1865 -7.1553 45 1 10.7494 -1.4353 -3.0544 46 1 9.1091 -1.3517 -3.7435 47 1 10.1147 0.0889 -1.2461 48 1 8.9483 -1.2552 -1.3009 49 1 6.6881 -0.8991 -2.3610 50 1 7.4969 -0.3303 -3.8416 51 1 5.1277 0.5005 -3.6255 52 1 6.3236 1.8179 -3.7072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717348243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:56 Heat of formation + Delta-G solvation = -22.056774 kcal Electronic energy + Delta-G solvation = -29124.559050 eV Core-core repulsion = 25443.393209 eV Total energy + Delta-G solvation = -3681.165841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.49676 -38.77746 -35.91373 -34.82168 -33.51387 -31.24198 -31.13614 -29.87887 -29.41614 -28.40395 -27.44767 -25.00343 -23.53594 -23.15402 -22.19587 -21.87902 -20.58195 -19.15913 -17.70377 -17.16934 -16.84366 -16.31479 -16.01782 -15.36189 -14.87231 -14.72258 -14.37347 -14.20479 -14.10040 -13.92803 -13.82106 -13.56782 -13.31191 -13.26491 -13.02508 -12.93944 -12.69787 -12.43332 -12.22236 -12.13136 -11.69278 -11.50774 -11.44097 -11.39308 -11.36960 -11.10546 -10.98643 -10.68163 -10.47957 -10.37214 -10.10430 -9.99085 -9.96430 -9.75994 -9.56952 -9.49980 -9.32092 -8.46569 -8.35424 -7.60264 -6.61620 -5.76566 -3.17522 1.53680 2.42956 2.73143 3.06544 3.37772 3.45267 3.47459 4.31294 4.33320 4.51527 4.78618 4.85643 4.88072 4.92048 4.96675 5.03861 5.11382 5.14934 5.21685 5.28355 5.35134 5.38885 5.42431 5.45728 5.53471 5.56777 5.60101 5.72050 5.75061 5.88663 5.94635 5.98383 6.08336 6.15791 6.20431 6.23967 6.40123 6.42804 6.58160 6.64479 6.70457 6.80013 6.86835 6.96571 7.03425 7.40420 7.53123 7.70557 7.82078 8.28208 8.47892 9.24591 9.88587 10.45476 11.31745 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.028355 B = 0.002399 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.236105 B =11668.847467 C =11710.535664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.236 6.236 3 C -0.045 4.045 4 H 0.093 0.907 5 C -0.148 4.148 6 C -0.123 4.123 7 C 0.508 3.492 8 O -0.525 6.525 9 N -0.607 5.607 10 C 0.106 3.894 11 C -0.124 4.124 12 C -0.046 4.046 13 C -0.132 4.132 14 C 0.171 3.829 15 N -0.591 5.591 16 C -0.249 4.249 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.902 5.902 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.144 3.856 25 C -0.121 4.121 26 C -0.122 4.122 27 C 0.113 3.887 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.020 0.980 44 H 0.253 0.747 45 H 0.050 0.950 46 H 0.019 0.981 47 H 0.057 0.943 48 H 0.047 0.953 49 H 0.056 0.944 50 H 0.088 0.912 51 H 0.086 0.914 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.960 2.221 16.722 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.010 6.010 3 C -0.174 4.174 4 H 0.111 0.889 5 C -0.207 4.207 6 C -0.164 4.164 7 C 0.295 3.705 8 O -0.401 6.401 9 N -0.341 5.341 10 C -0.017 4.017 11 C -0.162 4.162 12 C -0.047 4.047 13 C -0.171 4.171 14 C 0.046 3.954 15 N -0.314 5.314 16 C -0.379 4.379 17 H 0.081 0.919 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.729 3.271 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.018 3.982 25 C -0.160 4.160 26 C -0.160 4.160 27 C -0.009 4.009 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.038 0.962 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.037 0.963 47 H 0.076 0.924 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.107 0.893 51 H 0.105 0.895 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.708 1.186 16.123 23.249 hybrid contribution 0.160 1.387 -0.247 1.418 sum -16.548 2.573 15.876 23.076 Atomic orbital electron populations 1.23375 0.95249 1.06189 1.04503 1.87015 1.06247 1.10070 1.97702 1.22879 0.97929 0.95248 1.01330 0.88877 1.22109 1.01494 1.00907 0.96159 1.21552 0.94358 1.03479 0.96998 1.20398 0.82111 0.79196 0.88813 1.90736 1.52234 1.45159 1.51964 1.48129 1.06464 1.61385 1.18128 1.21894 0.89954 0.97054 0.92804 1.22087 0.97208 0.98605 0.98314 1.20377 0.94372 0.96586 0.93336 1.22314 0.98947 0.95388 1.00494 1.20774 0.90999 0.93167 0.90497 1.44030 1.11176 1.14126 1.62047 1.19172 0.84579 1.28439 1.05726 0.91861 1.25011 0.96982 1.02340 0.95395 1.70032 1.29393 1.40447 1.14847 0.86328 0.84542 0.78100 0.78102 1.21529 1.21622 1.20516 1.20917 0.97045 0.89866 0.90383 1.22034 0.97003 0.97419 0.99560 1.21994 0.94805 0.97324 1.01888 1.21660 0.97569 0.97923 0.83709 0.90918 0.90607 0.88369 0.91216 0.91573 0.92283 0.88198 0.87754 0.90801 0.90536 0.92065 0.91056 0.93242 0.92806 0.89824 0.96236 0.93728 0.93181 0.96340 0.92415 0.93414 0.92566 0.89347 0.89548 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.45 101.05 1.06 0.05 16 2 S -0.24 -2.70 20.24 -107.50 -2.18 -4.88 16 3 C -0.04 -0.42 2.44 -26.73 -0.07 -0.48 16 4 H 0.09 0.97 7.96 -51.92 -0.41 0.56 16 5 C -0.15 -0.95 9.10 37.15 0.34 -0.61 16 6 C -0.12 -1.14 3.52 -27.88 -0.10 -1.24 16 7 C 0.51 6.77 7.41 -10.98 -0.08 6.69 16 8 O -0.52 -8.81 14.21 5.55 0.08 -8.73 16 9 N -0.61 -7.95 2.97 -172.52 -0.51 -8.46 16 10 C 0.11 1.14 5.90 -3.48 -0.02 1.12 16 11 C -0.12 -1.51 4.92 -26.38 -0.13 -1.64 16 12 C -0.05 -0.71 0.51 -154.43 -0.08 -0.79 16 13 C -0.13 -2.34 4.15 -26.62 -0.11 -2.45 16 14 C 0.17 3.90 4.84 -3.71 -0.02 3.89 16 15 N -0.59 -14.40 2.99 -172.32 -0.52 -14.92 16 16 C -0.25 -6.77 9.59 -15.06 -0.14 -6.91 16 17 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 18 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 19 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 20 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.14 2.96 6.04 -3.71 -0.02 2.94 16 25 C -0.12 -2.02 4.90 -26.61 -0.13 -2.15 16 26 C -0.12 -1.93 4.14 -26.64 -0.11 -2.04 16 27 C 0.11 1.71 5.96 -3.73 -0.02 1.69 16 28 H 0.07 0.47 7.14 -51.92 -0.37 0.09 16 29 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.35 6.92 -51.93 -0.36 -0.01 16 34 H 0.10 0.84 7.72 -51.93 -0.40 0.44 16 35 H 0.10 0.72 7.92 -51.93 -0.41 0.31 16 36 H 0.07 0.81 6.66 -51.93 -0.35 0.46 16 37 H 0.08 0.61 5.94 -51.93 -0.31 0.31 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.80 4.98 -51.93 -0.26 0.54 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.08 2.19 6.04 -51.93 -0.31 1.87 16 43 H 0.02 0.47 6.74 -51.93 -0.35 0.12 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.05 1.03 7.93 -51.93 -0.41 0.61 16 46 H 0.02 0.39 6.67 -51.93 -0.35 0.04 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.09 1.61 4.99 -51.93 -0.26 1.35 16 51 H 0.09 1.40 7.01 -51.93 -0.36 1.04 16 52 H 0.07 1.13 6.74 -51.93 -0.35 0.78 16 LS Contribution 390.24 15.07 5.88 5.88 Total: -1.00 -31.30 390.24 -10.42 -41.72 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -9.04 Total: 0.19 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 0.28 Total: -2.00 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.41 Total: -48.74 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.08 Total: -8.73 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -2.18 Total: -4.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.30 -10.42 -41.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717348243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.659 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds