Wall clock time and date at job start Sat Apr 11 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81398 * 102.99810 * 2 1 4 4 H 1.09004 * 109.47349 * 304.99362 * 3 2 1 5 5 C 1.52991 * 109.47464 * 65.00036 * 3 2 1 6 6 C 1.53002 * 109.46985 * 184.99921 * 3 2 1 7 7 C 1.50700 * 109.47084 * 64.99876 * 6 3 2 8 8 O 1.21286 * 120.00295 * 359.97438 * 7 6 3 9 9 N 1.34780 * 119.99948 * 179.72400 * 7 6 3 10 10 C 1.46930 * 120.64299 * 359.72089 * 9 7 6 11 11 C 1.53622 * 108.54030 * 126.32436 * 10 9 7 12 12 C 1.53049 * 109.25900 * 54.86572 * 11 10 9 13 13 C 1.53029 * 109.44092 * 58.57533 * 12 11 10 14 14 C 1.53186 * 109.33660 * 181.23121 * 13 12 11 15 15 N 1.46931 * 108.77737 * 305.37382 * 14 13 12 16 16 C 1.36939 * 120.64021 * 233.61566 * 15 14 13 17 17 H 1.08005 * 120.00101 * 152.31331 * 16 15 14 18 18 C 1.38815 * 119.99982 * 332.31272 * 16 15 14 19 19 N 1.31612 * 119.99818 * 342.59846 * 18 16 15 20 20 Si 1.86806 * 119.99940 * 162.59901 * 18 16 15 21 21 H 1.48495 * 109.46938 * 94.35069 * 20 18 16 22 22 H 1.48495 * 109.46861 * 214.35097 * 20 18 16 23 23 H 1.48496 * 109.46864 * 334.35205 * 20 18 16 24 24 C 1.46927 * 118.71681 * 53.63891 * 15 14 13 25 25 C 1.53044 * 109.38794 * 178.60043 * 12 11 10 26 26 C 1.53028 * 109.54773 * 298.56017 * 12 11 10 27 27 C 1.46931 * 120.64470 * 179.97438 * 9 7 6 28 28 H 1.08998 * 109.47294 * 299.99925 * 1 2 3 29 29 H 1.09002 * 109.47121 * 60.00415 * 1 2 3 30 30 H 1.08997 * 109.46942 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47446 * 59.99538 * 5 3 2 32 32 H 1.09003 * 109.47492 * 180.02562 * 5 3 2 33 33 H 1.09005 * 109.47216 * 299.99753 * 5 3 2 34 34 H 1.09000 * 109.47226 * 304.99595 * 6 3 2 35 35 H 1.08998 * 109.47063 * 184.99644 * 6 3 2 36 36 H 1.08995 * 109.58655 * 246.15490 * 10 9 7 37 37 H 1.08999 * 109.58695 * 6.58572 * 10 9 7 38 38 H 1.09002 * 109.62756 * 294.87030 * 11 10 9 39 39 H 1.08997 * 109.42618 * 174.73993 * 11 10 9 40 40 H 1.09001 * 109.49004 * 301.18739 * 13 12 11 41 41 H 1.09000 * 109.49240 * 61.27049 * 13 12 11 42 42 H 1.08999 * 109.58486 * 185.58799 * 14 13 12 43 43 H 1.09001 * 109.70338 * 65.22672 * 14 13 12 44 44 H 0.97002 * 119.99908 * 180.02562 * 19 18 16 45 45 H 1.09005 * 109.58598 * 186.56622 * 24 15 14 46 46 H 1.08994 * 109.70120 * 66.21511 * 24 15 14 47 47 H 1.08999 * 109.49521 * 298.68971 * 25 12 11 48 48 H 1.09002 * 109.49579 * 58.77956 * 25 12 11 49 49 H 1.08998 * 109.49392 * 301.34335 * 26 12 11 50 50 H 1.08995 * 109.49383 * 181.25908 * 26 12 11 51 51 H 1.09005 * 109.58621 * 353.41053 * 27 9 7 52 52 H 1.08994 * 109.58547 * 113.68619 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2541 -0.8419 5 6 1.7428 2.4016 1.3073 6 6 3.7370 1.9412 -0.1257 7 6 4.1919 1.4270 -1.4672 8 8 3.3841 0.9664 -2.2459 9 7 5.4958 1.4835 -1.8037 10 6 6.4848 2.0491 -0.8759 11 6 7.6069 1.0201 -0.6710 12 6 8.1801 0.6204 -2.0327 13 6 8.7100 1.8654 -2.7475 14 6 9.2551 1.4673 -4.1226 15 7 10.2523 0.4028 -3.9460 16 6 11.5103 0.5307 -4.4717 17 1 12.3439 0.0253 -4.0068 18 6 11.7141 1.3100 -5.6023 19 7 10.6944 1.6423 -6.3650 20 14 13.4358 1.8870 -6.0410 21 1 14.0464 0.9354 -7.0037 22 1 13.3637 3.2362 -6.6569 23 1 14.2658 1.9479 -4.8112 24 6 9.8736 -0.8018 -3.1948 25 6 9.3218 -0.3785 -1.8299 26 6 7.0824 -0.0259 -2.8806 27 6 5.9551 0.9857 -3.1076 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.2353 1.9150 2.1491 32 1 1.9876 3.4638 1.3071 33 1 0.6635 2.2779 1.3968 34 1 4.2339 1.3805 0.6660 35 1 3.9902 2.9976 -0.0367 36 1 6.8982 2.9657 -1.2967 37 1 6.0072 2.2661 0.0796 38 1 7.2076 0.1376 -0.1712 39 1 8.3948 1.4598 -0.0595 40 1 7.9012 2.5855 -2.8714 41 1 9.5083 2.3128 -2.1553 42 1 9.7228 2.3315 -4.5944 43 1 8.4408 1.1047 -4.7499 44 1 10.8368 2.1865 -7.1553 45 1 10.7494 -1.4353 -3.0544 46 1 9.1091 -1.3517 -3.7435 47 1 10.1147 0.0889 -1.2461 48 1 8.9483 -1.2552 -1.3009 49 1 6.6881 -0.8991 -2.3610 50 1 7.4969 -0.3303 -3.8416 51 1 5.1277 0.5005 -3.6255 52 1 6.3236 1.8179 -3.7072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717348243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:55 Heat of formation + Delta-G solvation = -39.145471 kcal Electronic energy + Delta-G solvation = -29125.300071 eV Core-core repulsion = 25443.393209 eV Total energy + Delta-G solvation = -3681.906863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.64969 -40.02434 -37.35565 -35.55024 -35.10288 -32.97190 -32.25454 -31.52354 -30.20296 -29.55827 -28.41584 -26.63302 -24.82418 -24.39331 -23.59699 -22.92658 -21.99579 -20.32189 -19.22072 -18.44079 -17.82229 -17.59189 -17.00686 -16.83574 -16.28065 -15.79221 -15.70105 -15.47776 -15.21746 -15.04052 -14.93290 -14.89504 -14.57105 -14.44858 -14.22309 -13.97643 -13.60196 -13.37227 -13.20402 -13.17709 -12.94064 -12.84052 -12.81467 -12.70838 -12.51658 -12.31653 -12.24974 -12.19717 -12.04580 -11.97564 -11.73241 -11.63683 -11.15635 -11.02905 -10.90816 -10.73693 -10.62576 -10.46463 -9.50149 -8.61417 -8.44349 -7.84999 -5.29024 0.83818 1.45671 1.47099 1.57162 1.72672 1.75264 2.07840 2.52240 3.28756 3.50230 3.65028 3.74355 3.85034 3.85508 3.89728 4.16262 4.19468 4.24257 4.32370 4.33956 4.37869 4.38548 4.52910 4.55998 4.61170 4.63369 4.69498 4.70542 4.76222 4.78895 4.81517 4.87902 4.88906 4.96140 5.02590 5.06095 5.07696 5.12319 5.17925 5.29050 5.36235 5.42409 5.46585 5.49091 5.57405 5.67152 5.69691 5.88206 6.41591 6.54078 7.18238 7.28154 7.91299 8.42313 9.20592 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.028355 B = 0.002399 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.236105 B =11668.847467 C =11710.535664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.312 6.312 3 C -0.032 4.032 4 H 0.076 0.924 5 C -0.140 4.140 6 C -0.117 4.117 7 C 0.501 3.499 8 O -0.568 6.568 9 N -0.607 5.607 10 C 0.103 3.897 11 C -0.116 4.116 12 C -0.042 4.042 13 C -0.115 4.115 14 C 0.180 3.820 15 N -0.608 5.608 16 C -0.259 4.259 17 H 0.064 0.936 18 C -0.053 4.053 19 N -0.935 5.935 20 Si 0.964 3.036 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.269 1.269 24 C 0.139 3.861 25 C -0.110 4.110 26 C -0.112 4.112 27 C 0.121 3.879 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.138 0.862 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.045 0.955 43 H -0.005 1.005 44 H 0.248 0.752 45 H 0.045 0.955 46 H 0.010 0.990 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.060 0.940 50 H 0.054 0.946 51 H 0.067 0.933 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.410 3.425 20.419 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.087 6.087 3 C -0.161 4.161 4 H 0.095 0.905 5 C -0.199 4.199 6 C -0.157 4.157 7 C 0.291 3.709 8 O -0.447 6.447 9 N -0.341 5.341 10 C -0.018 4.018 11 C -0.154 4.154 12 C -0.043 4.043 13 C -0.154 4.154 14 C 0.054 3.946 15 N -0.332 5.332 16 C -0.389 4.389 17 H 0.081 0.919 18 C -0.248 4.248 19 N -0.582 5.582 20 Si 0.792 3.208 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.194 1.194 24 C 0.014 3.986 25 C -0.149 4.149 26 C -0.150 4.150 27 C -0.002 4.002 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.156 0.844 36 H 0.095 0.905 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.013 0.987 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.028 0.972 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.079 0.921 50 H 0.072 0.928 51 H 0.085 0.915 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.153 2.386 19.869 26.357 hybrid contribution 0.256 0.931 -1.465 1.755 sum -16.897 3.317 18.404 25.203 Atomic orbital electron populations 1.23363 0.92131 1.06874 1.05347 1.87206 1.09985 1.13619 1.97862 1.22904 0.97958 0.92792 1.02407 0.90504 1.22067 1.01754 1.01729 0.94358 1.21651 0.94279 1.05391 0.94365 1.21198 0.81526 0.78271 0.89941 1.90722 1.53328 1.46973 1.53652 1.48202 1.07201 1.61200 1.17451 1.22127 0.89276 0.96358 0.94068 1.22017 0.98075 0.99613 0.95689 1.20340 0.93716 0.94943 0.95266 1.22081 0.99201 0.96887 0.97231 1.20565 0.89660 0.91299 0.93063 1.44301 1.10736 1.15811 1.62346 1.19499 0.85870 1.27961 1.05584 0.91865 1.25760 1.00455 1.02987 0.95580 1.70197 1.31318 1.41370 1.15272 0.85312 0.80420 0.77119 0.77913 1.21542 1.21890 1.19364 1.21066 0.96811 0.88637 0.92125 1.21903 0.97353 0.98758 0.96853 1.21831 0.95116 0.97719 1.00319 1.21345 0.96534 0.97194 0.85144 0.88839 0.90888 0.87839 0.90613 0.89583 0.91917 0.86470 0.84385 0.90511 0.86444 0.91055 0.89131 0.91622 0.92823 0.93634 0.98690 0.94277 0.93612 0.97213 0.92193 0.90878 0.92132 0.92766 0.91476 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.45 113.37 1.19 -0.44 16 2 S -0.31 -6.84 20.24 -56.49 -1.14 -7.98 16 3 C -0.03 -0.51 2.44 30.59 0.07 -0.44 16 4 H 0.08 1.50 7.96 -2.39 -0.02 1.48 16 5 C -0.14 -1.29 9.10 71.98 0.65 -0.64 16 6 C -0.12 -1.74 3.52 29.85 0.11 -1.63 16 7 C 0.50 12.51 7.41 87.66 0.65 13.16 16 8 O -0.57 -19.16 14.21 -3.05 -0.04 -19.20 16 9 N -0.61 -14.72 2.97 -818.12 -2.43 -17.15 16 10 C 0.10 1.81 5.90 86.51 0.51 2.32 16 11 C -0.12 -2.35 4.92 30.82 0.15 -2.20 16 12 C -0.04 -1.23 0.51 -52.13 -0.03 -1.26 16 13 C -0.12 -4.00 4.15 30.67 0.13 -3.87 16 14 C 0.18 8.51 4.84 86.36 0.42 8.93 16 15 N -0.61 -30.46 2.99 -699.09 -2.09 -32.55 16 16 C -0.26 -14.34 9.59 84.03 0.81 -13.54 16 17 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 18 C -0.05 -2.97 4.91 84.86 0.42 -2.56 16 19 N -0.94 -56.04 11.19 21.65 0.24 -55.80 16 20 Si 0.96 45.26 29.59 68.60 2.03 47.29 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.14 5.77 6.04 86.36 0.52 6.29 16 25 C -0.11 -3.48 4.90 30.67 0.15 -3.33 16 26 C -0.11 -3.54 4.14 30.65 0.13 -3.41 16 27 C 0.12 3.70 5.96 86.35 0.51 4.21 16 28 H 0.09 0.99 7.14 -2.39 -0.02 0.97 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.55 6.92 -2.38 -0.02 0.53 16 34 H 0.12 1.42 7.72 -2.39 -0.02 1.41 16 35 H 0.14 1.17 7.92 -2.39 -0.02 1.15 16 36 H 0.08 1.36 6.66 -2.39 -0.02 1.34 16 37 H 0.12 1.17 5.94 -2.39 -0.01 1.16 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.07 2.06 4.98 -2.39 -0.01 2.05 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 2.49 6.04 -2.39 -0.01 2.48 16 43 H 0.00 -0.25 6.74 -2.39 -0.02 -0.27 16 44 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 45 H 0.05 1.89 7.93 -2.38 -0.02 1.87 16 46 H 0.01 0.43 6.67 -2.39 -0.02 0.41 16 47 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.05 2.09 4.99 -2.39 -0.01 2.07 16 51 H 0.07 2.30 7.01 -2.38 -0.02 2.29 16 52 H 0.06 1.97 6.74 -2.39 -0.02 1.95 16 Total: -1.00 -72.73 390.24 3.84 -68.89 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.89 Total: 14.91 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 6.39 Total: 1.59 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -4.28 Total: -105.50 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.04 Total: -19.20 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: -6.84 SS G_CDS: -1.14 Total: -7.98 kcal Total: -72.73 3.84 -68.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717348243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.741 kcal (2) G-P(sol) polarization free energy of solvation -72.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds