Wall clock time and date at job start Sat Apr 11 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47047 * 2 1 4 4 C 1.52996 * 109.47226 * 120.00445 * 2 1 3 5 5 N 1.46497 * 109.47070 * 175.37599 * 4 2 1 6 6 C 1.34780 * 119.99801 * 175.18767 * 5 4 2 7 7 O 1.21287 * 120.00205 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99768 * 179.97438 * 6 5 4 9 9 S 1.81005 * 109.46701 * 179.97438 * 8 6 5 10 10 C 1.76208 * 99.99796 * 179.97438 * 9 8 6 11 11 H 1.08006 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.38794 * 120.00152 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00346 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99758 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46715 * 90.00757 * 14 12 10 16 16 H 1.48501 * 109.47184 * 210.00415 * 14 12 10 17 17 H 1.48497 * 109.47369 * 330.00640 * 14 12 10 18 18 N 1.46901 * 109.47217 * 240.00296 * 2 1 3 19 19 C 1.46901 * 110.99911 * 72.34045 * 18 2 1 20 20 C 1.46904 * 111.00213 * 308.38821 * 18 2 1 21 21 C 1.53003 * 109.47167 * 189.99973 * 20 18 2 22 22 C 1.53947 * 113.57723 * 184.99477 * 21 20 18 23 23 C 1.52902 * 86.88223 * 220.53982 * 22 21 20 24 24 C 1.52917 * 121.13607 * 259.22641 * 23 22 21 25 25 C 1.53955 * 86.78096 * 209.38632 * 24 23 22 26 26 C 1.52916 * 121.13690 * 150.66995 * 23 22 21 27 27 C 1.53202 * 87.93763 * 24.90119 * 23 22 21 28 28 H 1.08999 * 109.47022 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47320 * 299.99633 * 1 2 3 30 30 H 1.09002 * 109.47087 * 60.00045 * 1 2 3 31 31 H 1.09008 * 109.46839 * 295.37369 * 4 2 1 32 32 H 1.08999 * 109.47167 * 55.36909 * 4 2 1 33 33 H 0.96996 * 120.00599 * 355.17993 * 5 4 2 34 34 H 1.09000 * 109.47056 * 299.99027 * 8 6 5 35 35 H 1.08990 * 109.47332 * 59.99835 * 8 6 5 36 36 H 0.96999 * 120.00351 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47172 * 289.82014 * 19 18 2 38 38 H 1.09003 * 109.47268 * 49.82530 * 19 18 2 39 39 H 1.09007 * 109.47366 * 169.82515 * 19 18 2 40 40 H 1.09001 * 109.47074 * 69.99888 * 20 18 2 41 41 H 1.09006 * 109.46482 * 310.00241 * 20 18 2 42 42 H 1.08997 * 112.82037 * 316.09018 * 21 20 18 43 43 H 1.08999 * 113.66414 * 335.06090 * 22 21 20 44 44 H 1.09004 * 113.66077 * 106.01932 * 22 21 20 45 45 H 1.09000 * 113.66304 * 323.85753 * 24 23 22 46 46 H 1.08997 * 113.65793 * 94.91381 * 24 23 22 47 47 H 1.09008 * 113.57845 * 270.13088 * 25 24 23 48 48 H 1.08998 * 113.65103 * 139.35248 * 25 24 23 49 49 H 1.08995 * 113.66297 * 265.09210 * 26 23 22 50 50 H 1.09003 * 113.65887 * 36.14363 * 26 23 22 51 51 H 1.09006 * 113.66439 * 220.63044 * 27 23 22 52 52 H 1.08996 * 113.74681 * 89.57919 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5008 -0.8185 1.1947 6 6 4.1813 -1.3317 2.2387 7 8 3.5845 -1.7127 3.2235 8 6 5.6839 -1.4322 2.1825 9 16 6.2982 -2.1564 3.7235 10 6 8.0289 -2.1568 3.3928 11 1 8.3989 -1.7773 2.4517 12 6 8.9166 -2.6457 4.3411 13 7 10.2095 -2.6455 4.0943 14 14 8.2765 -3.3026 5.9685 15 1 7.9994 -4.7560 5.8409 16 1 9.2959 -3.0840 7.0260 17 1 7.0253 -2.5902 6.3322 18 7 2.0197 -0.6924 -1.1995 19 6 1.8029 0.1219 -2.4028 20 6 1.3923 -2.0135 -1.3378 21 6 2.0997 -2.8010 -2.4425 22 6 1.4396 -4.1570 -2.7515 23 6 2.8545 -4.7250 -2.8673 24 6 3.5036 -4.9585 -4.2321 25 6 4.2895 -6.1024 -3.5657 26 6 3.1487 -6.1885 -2.5356 27 6 3.3248 -3.5922 -1.9492 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7459 -0.1619 2.1373 32 1 1.6105 -1.7222 1.2915 33 1 3.9782 -0.5136 0.4074 34 1 5.9747 -2.0634 1.3429 35 1 6.1100 -0.4373 2.0539 36 1 10.8299 -2.9869 4.7572 37 1 0.7366 0.1658 -2.6245 38 1 2.1805 1.1301 -2.2321 39 1 2.3309 -0.3261 -3.2447 40 1 0.3403 -1.8909 -1.5956 41 1 1.4747 -2.5553 -0.3955 42 1 2.2974 -2.1998 -3.3300 43 1 0.8706 -4.5668 -1.9170 44 1 0.8849 -4.1698 -3.6897 45 1 2.8042 -5.2958 -4.9971 46 1 4.1316 -4.1321 -4.5649 47 1 5.2407 -5.7862 -3.1374 48 1 4.3814 -6.9913 -4.1898 49 1 3.4931 -6.3447 -1.5134 50 1 2.3495 -6.8714 -2.8239 51 1 4.2774 -3.1543 -2.2473 52 1 3.2863 -3.8420 -0.8889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717463098.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:05 Heat of formation + Delta-G solvation = 0.793672 kcal Electronic energy + Delta-G solvation = -28021.410100 eV Core-core repulsion = 24341.235129 eV Total energy + Delta-G solvation = -3680.174971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75045 -39.47691 -38.32556 -35.34504 -33.98440 -32.39557 -31.42037 -29.37294 -28.19247 -26.28910 -25.95085 -25.89799 -25.55512 -24.82118 -23.02460 -20.71109 -20.21174 -19.70012 -18.08420 -17.78567 -16.38802 -16.37379 -16.21690 -15.82696 -15.46609 -15.28716 -14.96885 -14.79353 -14.77422 -14.21865 -13.86699 -13.68503 -13.16655 -13.15134 -12.93051 -12.83756 -12.75327 -12.61158 -12.51150 -12.28531 -12.20093 -11.93123 -11.80572 -11.55725 -11.45875 -11.22126 -11.15793 -10.97304 -10.87921 -10.70217 -10.53615 -10.28807 -10.20166 -9.84896 -9.81514 -9.41052 -8.96528 -8.79833 -8.55614 -8.43681 -6.85812 -6.24706 -3.95538 2.85435 3.11181 3.35014 3.38184 3.53968 3.56061 3.81955 4.21500 4.25310 4.37225 4.45108 4.49422 4.58751 4.61070 4.68183 4.72648 4.83857 4.93462 4.97602 5.03874 5.14470 5.17460 5.24539 5.28831 5.30568 5.36786 5.39780 5.48981 5.50445 5.52166 5.56905 5.59332 5.62927 5.67723 5.70709 5.74559 5.77198 5.84037 5.85943 5.89645 5.90402 5.98349 6.11630 6.21459 6.29881 6.41142 6.65157 6.77478 6.83493 7.84332 7.98599 8.46385 8.65119 9.21816 10.84635 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009265 B = 0.003061 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.349533 B = 9146.117909 C =11308.108583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.067 3.933 3 H 0.089 0.911 4 C 0.133 3.867 5 N -0.722 5.722 6 C 0.529 3.471 7 O -0.528 6.528 8 C -0.121 4.121 9 S -0.144 6.144 10 C -0.519 4.519 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.882 5.882 14 Si 0.856 3.144 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.235 1.235 18 N -0.531 5.531 19 C 0.022 3.978 20 C 0.061 3.939 21 C -0.101 4.101 22 C -0.123 4.123 23 C -0.106 4.106 24 C -0.117 4.117 25 C -0.140 4.140 26 C -0.131 4.131 27 C -0.098 4.098 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.406 0.594 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.270 0.730 37 H 0.026 0.974 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.078 0.922 51 H 0.068 0.932 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.938 1.766 -18.953 28.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.042 4.042 3 H 0.108 0.892 4 C 0.008 3.992 5 N -0.377 5.377 6 C 0.314 3.686 7 O -0.403 6.403 8 C -0.272 4.272 9 S 0.082 5.918 10 C -0.667 4.667 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.519 5.519 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.159 1.159 18 N -0.255 5.255 19 C -0.126 4.126 20 C -0.066 4.066 21 C -0.119 4.119 22 C -0.161 4.161 23 C -0.106 4.106 24 C -0.154 4.154 25 C -0.177 4.177 26 C -0.168 4.168 27 C -0.136 4.136 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.241 0.759 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.096 0.904 51 H 0.087 0.913 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.238 1.032 -17.198 27.347 hybrid contribution 0.051 0.375 -0.981 1.052 sum -21.187 1.408 -18.179 27.952 Atomic orbital electron populations 1.22377 0.96486 1.02723 1.02621 1.22018 0.93420 0.98540 0.90216 0.89249 1.21274 0.81300 1.00319 0.96343 1.45766 1.06626 1.65516 1.19746 1.20255 0.89326 0.76600 0.82389 1.90688 1.70326 1.47343 1.31949 1.23250 0.93649 1.05395 1.04912 1.84761 1.06592 1.81768 1.18645 1.22334 0.88696 1.48426 1.07251 0.89424 1.24705 0.94087 0.94181 0.98324 1.69939 1.01367 1.44889 1.35660 0.86741 0.80777 0.80938 0.83433 1.19250 1.20016 1.15911 1.62128 1.57943 1.03084 1.02319 1.22425 0.99280 0.97822 0.93034 1.22240 0.95483 0.89543 0.99355 1.22495 0.96877 0.94407 0.98142 1.22824 0.95898 0.95987 1.01386 1.22488 0.96375 0.94757 0.97004 1.22629 0.98819 0.98715 0.95222 1.22812 0.98059 0.98512 0.98355 1.22751 0.98350 0.95958 0.99730 1.22691 0.97826 0.94100 0.98953 0.91898 0.91576 0.92205 0.91188 0.92077 0.75852 0.88608 0.88667 0.92005 0.95584 0.91517 0.91123 0.94540 0.90290 0.89310 0.90104 0.91822 0.90282 0.91474 0.90009 0.91769 0.91221 0.90366 0.91304 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 8.42 37.16 0.31 -0.93 16 2 C 0.07 0.54 2.47 -67.71 -0.17 0.37 16 3 H 0.09 0.69 7.88 -51.93 -0.41 0.28 16 4 C 0.13 1.48 4.93 -4.05 -0.02 1.46 16 5 N -0.72 -9.47 5.42 -60.29 -0.33 -9.80 16 6 C 0.53 9.57 7.85 -10.98 -0.09 9.48 16 7 O -0.53 -11.56 15.86 5.55 0.09 -11.47 16 8 C -0.12 -2.41 6.16 36.01 0.22 -2.18 16 9 S -0.14 -3.71 18.55 -107.50 -1.99 -5.70 16 10 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 11 H 0.09 2.67 8.03 -52.48 -0.42 2.24 16 12 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 13 N -0.88 -26.87 13.97 55.49 0.78 -26.09 16 14 Si 0.86 22.04 27.74 -169.99 -4.71 17.33 16 15 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 18 N -0.53 -4.18 4.09 -234.87 -0.96 -5.14 16 19 C 0.02 0.15 8.93 60.07 0.54 0.68 16 20 C 0.06 0.49 3.66 -3.82 -0.01 0.48 16 21 C -0.10 -0.80 3.70 -89.63 -0.33 -1.14 16 22 C -0.12 -0.96 7.39 -26.29 -0.19 -1.16 16 23 C -0.11 -0.92 1.12 -154.55 -0.17 -1.09 16 24 C -0.12 -0.94 7.84 -26.28 -0.21 -1.15 16 25 C -0.14 -1.22 8.08 -25.75 -0.21 -1.43 16 26 C -0.13 -1.18 7.85 -26.28 -0.21 -1.39 16 27 C -0.10 -0.95 7.41 -26.13 -0.19 -1.15 16 28 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 29 H 0.07 0.43 8.14 -51.94 -0.42 0.01 16 30 H 0.06 0.37 7.01 -51.93 -0.36 0.01 16 31 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.06 0.74 6.65 -51.93 -0.35 0.39 16 33 H 0.41 4.64 8.08 -40.82 -0.33 4.31 16 34 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 35 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 36 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.03 0.16 7.07 -51.93 -0.37 -0.21 16 38 H 0.07 0.41 7.90 -51.93 -0.41 0.00 16 39 H 0.07 0.46 6.55 -51.93 -0.34 0.12 16 40 H 0.04 0.28 6.76 -51.93 -0.35 -0.07 16 41 H 0.08 0.76 6.00 -51.93 -0.31 0.45 16 42 H 0.09 0.70 6.37 -51.93 -0.33 0.37 16 43 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.08 0.96 7.90 -51.93 -0.41 0.55 16 LS Contribution 414.78 15.07 6.25 6.25 Total: -1.00 -32.84 414.78 -10.78 -43.62 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -9.38 Total: 2.28 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -0.52 Total: -11.26 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: -0.51 Total: -41.04 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.84 -10.78 -43.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717463098.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.410 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds