Wall clock time and date at job start Sat Apr 11 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47047 * 2 1 4 4 C 1.52996 * 109.47226 * 120.00445 * 2 1 3 5 5 N 1.46497 * 109.47070 * 175.37599 * 4 2 1 6 6 C 1.34780 * 119.99801 * 175.18767 * 5 4 2 7 7 O 1.21287 * 120.00205 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99768 * 179.97438 * 6 5 4 9 9 S 1.81005 * 109.46701 * 179.97438 * 8 6 5 10 10 C 1.76208 * 99.99796 * 179.97438 * 9 8 6 11 11 H 1.08006 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.38794 * 120.00152 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00346 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99758 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46715 * 90.00757 * 14 12 10 16 16 H 1.48501 * 109.47184 * 210.00415 * 14 12 10 17 17 H 1.48497 * 109.47369 * 330.00640 * 14 12 10 18 18 N 1.46901 * 109.47217 * 240.00296 * 2 1 3 19 19 C 1.46901 * 110.99911 * 72.34045 * 18 2 1 20 20 C 1.46904 * 111.00213 * 308.38821 * 18 2 1 21 21 C 1.53003 * 109.47167 * 189.99973 * 20 18 2 22 22 C 1.53947 * 113.57723 * 184.99477 * 21 20 18 23 23 C 1.52902 * 86.88223 * 220.53982 * 22 21 20 24 24 C 1.52917 * 121.13607 * 259.22641 * 23 22 21 25 25 C 1.53955 * 86.78096 * 209.38632 * 24 23 22 26 26 C 1.52916 * 121.13690 * 150.66995 * 23 22 21 27 27 C 1.53202 * 87.93763 * 24.90119 * 23 22 21 28 28 H 1.08999 * 109.47022 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47320 * 299.99633 * 1 2 3 30 30 H 1.09002 * 109.47087 * 60.00045 * 1 2 3 31 31 H 1.09008 * 109.46839 * 295.37369 * 4 2 1 32 32 H 1.08999 * 109.47167 * 55.36909 * 4 2 1 33 33 H 0.96996 * 120.00599 * 355.17993 * 5 4 2 34 34 H 1.09000 * 109.47056 * 299.99027 * 8 6 5 35 35 H 1.08990 * 109.47332 * 59.99835 * 8 6 5 36 36 H 0.96999 * 120.00351 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47172 * 289.82014 * 19 18 2 38 38 H 1.09003 * 109.47268 * 49.82530 * 19 18 2 39 39 H 1.09007 * 109.47366 * 169.82515 * 19 18 2 40 40 H 1.09001 * 109.47074 * 69.99888 * 20 18 2 41 41 H 1.09006 * 109.46482 * 310.00241 * 20 18 2 42 42 H 1.08997 * 112.82037 * 316.09018 * 21 20 18 43 43 H 1.08999 * 113.66414 * 335.06090 * 22 21 20 44 44 H 1.09004 * 113.66077 * 106.01932 * 22 21 20 45 45 H 1.09000 * 113.66304 * 323.85753 * 24 23 22 46 46 H 1.08997 * 113.65793 * 94.91381 * 24 23 22 47 47 H 1.09008 * 113.57845 * 270.13088 * 25 24 23 48 48 H 1.08998 * 113.65103 * 139.35248 * 25 24 23 49 49 H 1.08995 * 113.66297 * 265.09210 * 26 23 22 50 50 H 1.09003 * 113.65887 * 36.14363 * 26 23 22 51 51 H 1.09006 * 113.66439 * 220.63044 * 27 23 22 52 52 H 1.08996 * 113.74681 * 89.57919 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5008 -0.8185 1.1947 6 6 4.1813 -1.3317 2.2387 7 8 3.5845 -1.7127 3.2235 8 6 5.6839 -1.4322 2.1825 9 16 6.2982 -2.1564 3.7235 10 6 8.0289 -2.1568 3.3928 11 1 8.3989 -1.7773 2.4517 12 6 8.9166 -2.6457 4.3411 13 7 10.2095 -2.6455 4.0943 14 14 8.2765 -3.3026 5.9685 15 1 7.9994 -4.7560 5.8409 16 1 9.2959 -3.0840 7.0260 17 1 7.0253 -2.5902 6.3322 18 7 2.0197 -0.6924 -1.1995 19 6 1.8029 0.1219 -2.4028 20 6 1.3923 -2.0135 -1.3378 21 6 2.0997 -2.8010 -2.4425 22 6 1.4396 -4.1570 -2.7515 23 6 2.8545 -4.7250 -2.8673 24 6 3.5036 -4.9585 -4.2321 25 6 4.2895 -6.1024 -3.5657 26 6 3.1487 -6.1885 -2.5356 27 6 3.3248 -3.5922 -1.9492 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7459 -0.1619 2.1373 32 1 1.6105 -1.7222 1.2915 33 1 3.9782 -0.5136 0.4074 34 1 5.9747 -2.0634 1.3429 35 1 6.1100 -0.4373 2.0539 36 1 10.8299 -2.9869 4.7572 37 1 0.7366 0.1658 -2.6245 38 1 2.1805 1.1301 -2.2321 39 1 2.3309 -0.3261 -3.2447 40 1 0.3403 -1.8909 -1.5956 41 1 1.4747 -2.5553 -0.3955 42 1 2.2974 -2.1998 -3.3300 43 1 0.8706 -4.5668 -1.9170 44 1 0.8849 -4.1698 -3.6897 45 1 2.8042 -5.2958 -4.9971 46 1 4.1316 -4.1321 -4.5649 47 1 5.2407 -5.7862 -3.1374 48 1 4.3814 -6.9913 -4.1898 49 1 3.4931 -6.3447 -1.5134 50 1 2.3495 -6.8714 -2.8239 51 1 4.2774 -3.1543 -2.2473 52 1 3.2863 -3.8420 -0.8889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717463098.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:04 Heat of formation + Delta-G solvation = -19.405648 kcal Electronic energy + Delta-G solvation = -28022.286008 eV Core-core repulsion = 24341.235129 eV Total energy + Delta-G solvation = -3681.050880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45485 -40.67281 -39.26288 -36.14678 -35.08188 -34.66410 -32.32736 -30.72652 -28.81780 -27.88541 -27.05008 -26.65157 -26.60569 -25.58862 -23.73127 -21.67907 -21.38914 -20.41202 -19.79413 -18.78294 -17.78842 -17.44681 -17.15450 -17.06963 -16.52226 -16.33777 -16.23747 -15.85988 -15.71143 -15.54769 -14.93677 -14.84720 -14.65995 -14.20056 -14.16972 -13.69222 -13.57093 -13.50664 -13.32973 -13.18713 -13.08752 -12.99371 -12.92422 -12.89119 -12.60756 -12.49154 -12.21270 -12.15765 -11.88336 -11.84925 -11.56668 -11.38096 -11.16617 -10.98675 -10.96078 -10.90360 -10.53073 -10.52516 -10.02192 -9.17825 -8.98216 -8.50908 -6.21372 1.00503 1.31518 1.47550 1.57447 1.63257 2.24917 2.32556 2.73349 2.87322 2.94905 3.52096 3.55739 3.74236 3.78536 3.90545 3.91070 3.95700 3.99858 4.09217 4.24311 4.27221 4.36132 4.48636 4.48999 4.56244 4.58723 4.60465 4.67176 4.75469 4.77361 4.82825 4.84890 4.88834 4.91861 4.95418 4.97814 5.03469 5.06347 5.12610 5.14988 5.17989 5.23389 5.26520 5.50624 5.52164 5.59225 5.71497 5.72222 6.11997 6.15046 6.18351 6.59301 6.94350 7.28232 8.61693 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009265 B = 0.003061 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.349533 B = 9146.117909 C =11308.108583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.100 0.900 4 C 0.131 3.869 5 N -0.696 5.696 6 C 0.533 3.467 7 O -0.569 6.569 8 C -0.109 4.109 9 S -0.174 6.174 10 C -0.529 4.529 11 H 0.061 0.939 12 C 0.046 3.954 13 N -0.918 5.918 14 Si 0.914 3.086 15 H -0.263 1.263 16 H -0.258 1.258 17 H -0.237 1.237 18 N -0.541 5.541 19 C 0.024 3.976 20 C 0.066 3.934 21 C -0.089 4.089 22 C -0.117 4.117 23 C -0.108 4.108 24 C -0.109 4.109 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.105 4.105 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.418 0.582 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.277 0.723 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.051 0.949 50 H 0.089 0.911 51 H 0.058 0.942 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.029 2.497 -20.371 30.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.032 4.032 3 H 0.118 0.882 4 C 0.007 3.993 5 N -0.349 5.349 6 C 0.318 3.682 7 O -0.448 6.448 8 C -0.260 4.260 9 S 0.052 5.948 10 C -0.676 4.676 11 H 0.079 0.921 12 C -0.159 4.159 13 N -0.556 5.556 14 Si 0.736 3.264 15 H -0.187 1.187 16 H -0.182 1.182 17 H -0.161 1.161 18 N -0.265 5.265 19 C -0.124 4.124 20 C -0.061 4.061 21 C -0.107 4.107 22 C -0.154 4.154 23 C -0.108 4.108 24 C -0.146 4.146 25 C -0.181 4.181 26 C -0.173 4.173 27 C -0.143 4.143 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.255 0.745 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.112 0.888 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.070 0.930 50 H 0.107 0.893 51 H 0.076 0.924 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.335 1.789 -18.668 29.937 hybrid contribution 0.676 0.189 -0.682 0.979 sum -22.659 1.978 -19.350 29.863 Atomic orbital electron populations 1.22323 0.95165 1.02741 1.03418 1.21920 0.94284 0.98307 0.88715 0.88221 1.21445 0.79395 1.00350 0.98110 1.45568 1.07666 1.63202 1.18496 1.19914 0.88457 0.76878 0.82946 1.90677 1.70703 1.49678 1.33758 1.23236 0.95157 1.05836 1.01736 1.84665 1.04270 1.82856 1.22997 1.22469 0.90827 1.48036 1.06307 0.92108 1.25553 0.94300 0.94409 1.01631 1.70014 1.02517 1.45878 1.37156 0.85875 0.80442 0.80349 0.79753 1.18727 1.18242 1.16053 1.62097 1.58230 1.03225 1.02926 1.22448 0.99916 0.97833 0.92185 1.22142 0.96075 0.89524 0.98389 1.22427 0.95645 0.94485 0.98182 1.22780 0.95325 0.95436 1.01909 1.22505 0.97045 0.94062 0.97186 1.22615 0.98731 0.98248 0.95008 1.22815 0.97422 0.99356 0.98492 1.22797 0.98904 0.96689 0.98865 1.22644 0.98245 0.95460 0.97914 0.92277 0.91255 0.90930 0.91694 0.92897 0.74502 0.87441 0.87131 0.91368 0.94747 0.90835 0.90940 0.93503 0.92187 0.88487 0.90443 0.90448 0.88789 0.91484 0.91354 0.90809 0.93002 0.89264 0.92365 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.42 71.98 0.61 -1.36 16 2 C 0.08 1.05 2.47 44.91 0.11 1.16 16 3 H 0.10 1.23 7.88 -2.39 -0.02 1.21 16 4 C 0.13 2.76 4.93 86.38 0.43 3.19 16 5 N -0.70 -17.45 5.42 -463.05 -2.51 -19.95 16 6 C 0.53 19.00 7.85 87.66 0.69 19.69 16 7 O -0.57 -24.94 15.86 -3.05 -0.05 -24.99 16 8 C -0.11 -4.27 6.16 71.24 0.44 -3.83 16 9 S -0.17 -9.03 18.55 -56.49 -1.05 -10.08 16 10 C -0.53 -31.39 10.04 67.95 0.68 -30.71 16 11 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 12 C 0.05 2.76 5.50 84.86 0.47 3.23 16 13 N -0.92 -56.59 13.97 21.65 0.30 -56.29 16 14 Si 0.91 45.67 27.74 68.60 1.90 47.58 16 15 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 17 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 18 N -0.54 -7.32 4.09 -897.00 -3.67 -10.99 16 19 C 0.02 0.24 8.93 127.69 1.14 1.38 16 20 C 0.07 0.96 3.66 86.30 0.32 1.28 16 21 C -0.09 -1.28 3.70 -10.15 -0.04 -1.32 16 22 C -0.12 -1.63 7.39 30.88 0.23 -1.40 16 23 C -0.11 -1.78 1.12 -52.21 -0.06 -1.84 16 24 C -0.11 -1.60 7.84 30.89 0.24 -1.36 16 25 C -0.14 -2.43 8.08 31.23 0.25 -2.18 16 26 C -0.14 -2.41 7.85 30.89 0.24 -2.17 16 27 C -0.11 -2.02 7.41 30.98 0.23 -1.80 16 28 H 0.06 0.72 6.54 -2.39 -0.02 0.70 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.66 7.01 -2.39 -0.02 0.64 16 31 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.05 1.25 6.65 -2.39 -0.02 1.23 16 33 H 0.42 8.77 8.08 -92.71 -0.75 8.02 16 34 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 35 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 36 H 0.28 15.77 8.31 -92.71 -0.77 14.99 16 37 H 0.03 0.30 7.07 -2.39 -0.02 0.29 16 38 H 0.07 0.66 7.90 -2.39 -0.02 0.64 16 39 H 0.07 0.72 6.55 -2.38 -0.02 0.71 16 40 H 0.05 0.60 6.76 -2.39 -0.02 0.58 16 41 H 0.06 1.12 6.00 -2.38 -0.01 1.10 16 42 H 0.10 1.29 6.37 -2.39 -0.02 1.27 16 43 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 52 H 0.06 1.48 7.90 -2.39 -0.02 1.46 16 Total: -1.00 -71.49 414.78 1.01 -70.47 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.11 Total: 22.28 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 5.97 Total: -18.03 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -5.87 Total: -87.23 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.99 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.90 Total: 47.58 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -71.49 1.01 -70.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717463098.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.069 kcal (2) G-P(sol) polarization free energy of solvation -71.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds