Wall clock time and date at job start Sat Apr 11 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.99873 * 2 1 4 4 C 1.54325 * 109.88067 * 121.09341 * 2 1 3 5 5 C 1.55158 * 102.94283 * 97.22715 * 4 2 1 6 6 H 1.09001 * 111.03352 * 277.41313 * 5 4 2 7 7 N 1.46899 * 111.00509 * 153.57544 * 5 4 2 8 8 C 1.46899 * 110.99931 * 161.34777 * 7 5 4 9 9 C 1.53004 * 109.47223 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.47197 * 180.02562 * 9 8 7 11 11 C 1.54887 * 110.48548 * 70.22398 * 10 9 8 12 12 C 1.54893 * 102.74533 * 156.62347 * 11 10 9 13 13 C 1.54266 * 104.19500 * 322.05712 * 12 11 10 14 14 C 1.53872 * 106.60044 * 23.61099 * 13 12 11 15 15 C 1.54907 * 101.57963 * 35.50070 * 5 4 2 16 16 N 1.47021 * 109.88584 * 238.90181 * 2 1 3 17 17 C 1.34772 * 125.64641 * 59.48263 * 16 2 1 18 18 O 1.21284 * 120.00136 * 0.02768 * 17 16 2 19 19 C 1.50703 * 120.00070 * 180.02562 * 17 16 2 20 20 S 1.81003 * 109.47015 * 180.02562 * 19 17 16 21 21 C 1.76204 * 99.99515 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00275 * 359.97438 * 21 20 19 23 23 C 1.38801 * 119.99483 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00459 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99835 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47158 * 89.99949 * 25 23 21 27 27 H 1.48498 * 109.47207 * 210.00197 * 25 23 21 28 28 H 1.48502 * 109.46968 * 330.00054 * 25 23 21 29 29 H 1.08998 * 109.46963 * 179.64514 * 1 2 3 30 30 H 1.09007 * 109.47548 * 299.64447 * 1 2 3 31 31 H 1.08996 * 109.47350 * 59.64459 * 1 2 3 32 32 H 1.09002 * 110.72295 * 338.86102 * 4 2 1 33 33 H 1.09000 * 110.72033 * 215.58788 * 4 2 1 34 34 H 1.00899 * 111.00178 * 285.29823 * 7 5 4 35 35 H 1.09005 * 109.47233 * 59.99913 * 8 7 5 36 36 H 1.08996 * 109.47230 * 300.00317 * 8 7 5 37 37 H 1.09005 * 109.46956 * 59.99903 * 9 8 7 38 38 H 1.08994 * 109.46898 * 300.00347 * 9 8 7 39 39 H 1.09001 * 110.53587 * 307.61204 * 10 9 8 40 40 H 1.09001 * 110.75744 * 274.93249 * 11 10 9 41 41 H 1.09000 * 110.75698 * 38.31067 * 11 10 9 42 42 H 1.09002 * 110.48578 * 203.38190 * 12 11 10 43 43 H 1.09001 * 110.49013 * 80.73631 * 12 11 10 44 44 H 1.09002 * 110.02957 * 264.32709 * 13 12 11 45 45 H 1.08996 * 110.03427 * 142.89930 * 13 12 11 46 46 H 1.09003 * 110.03622 * 240.71485 * 14 13 12 47 47 H 1.09005 * 110.03465 * 119.28158 * 14 13 12 48 48 H 1.08997 * 110.36737 * 81.83149 * 15 5 4 49 49 H 1.09004 * 110.36108 * 204.15479 * 15 5 4 50 50 H 1.08999 * 109.47098 * 300.00402 * 19 17 16 51 51 H 1.09001 * 109.47142 * 60.00207 * 19 17 16 52 52 H 0.97000 * 120.00346 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0547 -0.7495 1.2428 5 6 2.3518 -2.1695 0.6925 6 1 1.4455 -2.7742 0.6605 7 7 3.3965 -2.8330 1.4839 8 6 3.3756 -4.2862 1.2703 9 6 4.4754 -4.9408 2.1086 10 6 4.4541 -6.4543 1.8856 11 6 4.9451 -6.7988 0.4575 12 6 5.4314 -8.2618 0.6070 13 6 6.0919 -8.3004 2.0006 14 6 5.4705 -7.1512 2.8135 15 6 2.8568 -1.8498 -0.7366 16 7 2.0300 -0.7141 -1.1838 17 6 1.7742 -0.3854 -2.4656 18 8 1.0769 0.5743 -2.7180 19 6 2.3547 -1.2103 -3.5853 20 16 1.8341 -0.5202 -5.1756 21 6 2.6321 -1.6445 -6.2728 22 1 3.2248 -2.4561 -5.8773 23 6 2.4990 -1.4870 -7.6454 24 7 1.7770 -0.4975 -8.1274 25 14 3.3443 -2.6793 -8.8087 26 1 2.4337 -3.8153 -9.1010 27 1 3.6846 -1.9795 -10.0735 28 1 4.5868 -3.1908 -8.1763 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3634 0.5083 0.8932 31 1 -0.3634 0.5193 -0.8867 32 1 1.2917 -0.7890 2.0201 33 1 2.9656 -0.2831 1.6183 34 1 4.3063 -2.4499 1.2754 35 1 3.5470 -4.5009 0.2154 36 1 2.4055 -4.6835 1.5689 37 1 4.3045 -4.7262 3.1636 38 1 5.4453 -4.5435 1.8095 39 1 3.4524 -6.8511 2.0506 40 1 4.1257 -6.7354 -0.2585 41 1 5.7675 -6.1464 0.1640 42 1 6.1600 -8.5026 -0.1672 43 1 4.5876 -8.9505 0.5655 44 1 7.1679 -8.1530 1.9080 45 1 5.8857 -9.2547 2.4852 46 1 6.2449 -6.4461 3.1156 47 1 4.9626 -7.5478 3.6927 48 1 3.9091 -1.5667 -0.7127 49 1 2.7087 -2.7081 -1.3921 50 1 3.4427 -1.1950 -3.5216 51 1 2.0003 -2.2377 -3.5012 52 1 1.6837 -0.3877 -9.0866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717820484.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:30 Heat of formation + Delta-G solvation = -81.510340 kcal Electronic energy + Delta-G solvation = -27267.354389 eV Core-core repulsion = 23583.610448 eV Total energy + Delta-G solvation = -3683.743941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33851 -39.50776 -38.85192 -36.37785 -34.61808 -33.44096 -32.90711 -30.37808 -29.97917 -29.50932 -27.69943 -26.93309 -26.63197 -23.67809 -22.94644 -21.81987 -21.21349 -20.57165 -20.35131 -19.57502 -18.08422 -17.37429 -16.97411 -16.90600 -16.67085 -16.29934 -16.15197 -15.76183 -15.63310 -15.14835 -14.71366 -14.61131 -14.37435 -14.26572 -14.15454 -14.02832 -13.77943 -13.62083 -13.24246 -13.19990 -13.11600 -12.97898 -12.91182 -12.61559 -12.44853 -12.13660 -12.11249 -11.96331 -11.86000 -11.75938 -11.66227 -11.49139 -11.35224 -11.29530 -11.17125 -11.16720 -10.91742 -10.32665 -9.78741 -9.37956 -8.71612 -8.37483 -6.16632 1.20504 1.40473 1.42177 1.53439 1.53735 2.02795 2.24275 2.96521 3.01453 3.24869 3.52935 3.55710 3.74280 3.79845 3.86621 3.90961 4.02832 4.09394 4.17056 4.24054 4.27526 4.35820 4.39944 4.41212 4.54056 4.60561 4.62762 4.68204 4.71626 4.74415 4.78100 4.81239 4.83626 4.95295 4.96721 5.02221 5.04517 5.12556 5.13407 5.24340 5.29495 5.30541 5.32054 5.38078 5.41833 5.49534 5.53528 5.61389 6.02497 6.16515 6.35291 6.44566 7.03334 7.10167 8.71838 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007871 B = 0.002726 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3556.394216 B =10270.332175 C =13606.558529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 H 0.065 0.935 4 C -0.100 4.100 5 C 0.090 3.910 6 H 0.094 0.906 7 N -0.669 5.669 8 C 0.057 3.943 9 C -0.101 4.101 10 C -0.088 4.088 11 C -0.124 4.124 12 C -0.130 4.130 13 C -0.126 4.126 14 C -0.119 4.119 15 C 0.066 3.934 16 N -0.610 5.610 17 C 0.546 3.454 18 O -0.560 6.560 19 C -0.120 4.120 20 S -0.147 6.147 21 C -0.546 4.546 22 H 0.081 0.919 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.258 1.258 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.034 0.966 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.350 0.650 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.101 0.899 51 H 0.101 0.899 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.874 -13.861 27.121 31.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 H 0.084 0.916 4 C -0.138 4.138 5 C -0.022 4.022 6 H 0.112 0.888 7 N -0.299 5.299 8 C -0.072 4.072 9 C -0.138 4.138 10 C -0.107 4.107 11 C -0.161 4.161 12 C -0.167 4.167 13 C -0.164 4.164 14 C -0.157 4.157 15 C -0.059 4.059 16 N -0.345 5.345 17 C 0.334 3.666 18 O -0.438 6.438 19 C -0.271 4.271 20 S 0.080 5.920 21 C -0.694 4.694 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.821 3.179 26 H -0.192 1.192 27 H -0.202 1.202 28 H -0.182 1.182 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.169 0.831 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.120 0.880 51 H 0.120 0.880 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.401 -12.374 27.138 30.505 hybrid contribution 1.341 -1.427 -1.924 2.746 sum 7.743 -13.801 25.214 29.769 Atomic orbital electron populations 1.22104 0.94878 1.02223 1.02465 1.21786 0.94853 0.96448 0.84485 0.91643 1.22651 1.03028 0.93313 0.94796 1.22656 0.95865 0.95759 0.87906 0.88777 1.60585 1.08260 1.04102 1.56968 1.22062 1.00040 0.87023 0.98084 1.21515 0.98117 0.93662 1.00546 1.21951 0.99222 0.94834 0.94727 1.22610 1.00343 0.96349 0.96813 1.22386 1.00179 0.96934 0.97218 1.22146 0.99948 0.98854 0.95449 1.22190 0.98252 0.97183 0.98065 1.23376 0.95497 0.88553 0.98460 1.48426 1.50975 1.31193 1.03944 1.19736 0.79934 0.84161 0.82802 1.90675 1.39539 1.30029 1.83532 1.23302 1.04351 1.02749 0.96680 1.85572 1.68440 1.42419 0.95598 1.23164 1.36590 1.15982 0.93678 0.90092 1.26145 0.95796 0.97893 0.99284 1.70179 1.38962 1.31334 1.14211 0.84944 0.78660 0.77509 0.76812 1.19205 1.20167 1.18176 0.92314 0.89143 0.94709 0.87799 0.88962 0.83090 0.95147 0.91095 0.91006 0.91766 0.90871 0.92125 0.91702 0.91944 0.91778 0.91908 0.91682 0.91517 0.91559 0.90122 0.90802 0.88031 0.88038 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 9.06 71.98 0.65 -3.17 16 2 C 0.13 2.94 3.49 45.34 0.16 3.10 16 3 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.10 -1.44 6.19 31.78 0.20 -1.24 16 5 C 0.09 1.32 3.32 46.31 0.15 1.47 16 6 H 0.09 1.47 7.92 -2.39 -0.02 1.45 16 7 N -0.67 -7.88 6.38 -484.41 -3.09 -10.97 16 8 C 0.06 0.66 5.43 86.30 0.47 1.13 16 9 C -0.10 -1.01 4.82 30.60 0.15 -0.87 16 10 C -0.09 -0.95 2.85 -9.72 -0.03 -0.97 16 11 C -0.12 -1.54 5.67 31.89 0.18 -1.36 16 12 C -0.13 -1.56 6.83 31.67 0.22 -1.35 16 13 C -0.13 -1.35 6.80 31.32 0.21 -1.13 16 14 C -0.12 -1.20 6.37 31.32 0.20 -1.00 16 15 C 0.07 1.31 6.27 86.86 0.54 1.85 16 16 N -0.61 -17.30 3.08 -788.08 -2.43 -19.73 16 17 C 0.55 21.65 7.65 87.66 0.67 22.32 16 18 O -0.56 -27.11 14.76 -3.04 -0.04 -27.15 16 19 C -0.12 -5.02 5.16 71.24 0.37 -4.65 16 20 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 21 C -0.55 -31.62 9.50 67.95 0.65 -30.97 16 22 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 23 C 0.01 0.78 5.49 84.86 0.47 1.25 16 24 N -0.91 -56.38 13.22 21.65 0.29 -56.09 16 25 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.03 1.12 6.74 -2.39 -0.02 1.11 16 32 H 0.10 1.22 7.83 -2.39 -0.02 1.20 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.35 3.62 8.30 -89.69 -0.74 2.87 16 35 H 0.03 0.40 7.55 -2.38 -0.02 0.38 16 36 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 37 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.06 0.64 8.02 -2.39 -0.02 0.62 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.82 8.06 -2.39 -0.02 0.80 16 41 H 0.06 0.84 7.96 -2.39 -0.02 0.82 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.07 0.65 7.84 -2.39 -0.02 0.63 16 47 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.08 1.42 7.80 -2.39 -0.02 1.40 16 49 H 0.07 1.52 7.48 -2.38 -0.02 1.50 16 50 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16 51 H 0.10 3.92 7.85 -2.39 -0.02 3.90 16 52 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -74.57 419.06 0.97 -73.60 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.13 Total: 19.68 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 5.25 Total: -15.59 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -5.23 Total: -86.79 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.04 Total: -27.15 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -74.57 0.97 -73.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717820484.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.915 kcal (2) G-P(sol) polarization free energy of solvation -74.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds