Wall clock time and date at job start Sat Apr 11 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00624 * 2 1 4 4 C 1.50710 * 119.99509 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47084 * 95.00085 * 4 2 1 6 6 N 1.46898 * 109.46759 * 180.02562 * 5 4 2 7 7 C 1.46848 * 110.99917 * 189.99554 * 6 5 4 8 8 C 1.53037 * 109.52564 * 185.83539 * 7 6 5 9 9 C 1.53118 * 109.28129 * 300.82520 * 8 7 6 10 10 C 1.52999 * 109.52177 * 177.55608 * 9 8 7 11 11 H 1.09004 * 109.47434 * 300.00205 * 10 9 8 12 12 C 1.52997 * 109.47114 * 60.00012 * 10 9 8 13 13 N 1.46498 * 109.46963 * 179.97438 * 10 9 8 14 14 C 1.34777 * 119.99828 * 154.72290 * 13 10 9 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 10 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 10 17 17 S 1.81000 * 109.47389 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99715 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00516 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99710 * 179.97438 * 18 17 16 21 21 N 1.31634 * 120.00163 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00011 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46661 * 60.00586 * 22 20 18 24 24 H 1.48501 * 109.47391 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47355 * 300.00441 * 22 20 18 26 26 C 1.53122 * 109.15791 * 57.65121 * 9 8 7 27 27 C 1.46843 * 111.00181 * 314.20792 * 6 5 4 28 28 H 1.08002 * 119.99396 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.00729 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47275 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46835 * 299.99997 * 3 2 1 32 32 H 1.08996 * 109.47265 * 59.99875 * 3 2 1 33 33 H 1.09003 * 109.46742 * 334.99662 * 4 2 1 34 34 H 1.09004 * 109.46996 * 215.00114 * 4 2 1 35 35 H 1.08997 * 109.47293 * 59.99927 * 5 4 2 36 36 H 1.09004 * 109.47228 * 299.99886 * 5 4 2 37 37 H 1.09004 * 109.46258 * 65.82679 * 7 6 5 38 38 H 1.08998 * 109.45620 * 305.85170 * 7 6 5 39 39 H 1.09003 * 109.50371 * 180.87896 * 8 7 6 40 40 H 1.09005 * 109.52981 * 60.79055 * 8 7 6 41 41 H 1.08996 * 109.51971 * 297.68299 * 9 8 7 42 42 H 1.09009 * 109.47238 * 59.99946 * 12 10 9 43 43 H 1.08997 * 109.47293 * 179.97438 * 12 10 9 44 44 H 1.09003 * 109.47189 * 300.00067 * 12 10 9 45 45 H 0.97001 * 120.00384 * 335.00737 * 13 10 9 46 46 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 47 47 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 48 48 H 0.96991 * 119.99795 * 179.97438 * 21 20 18 49 49 H 1.09007 * 109.50266 * 62.28790 * 26 9 8 50 50 H 1.09000 * 109.50157 * 182.40416 * 26 9 8 51 51 H 1.09001 * 109.46081 * 294.17485 * 27 6 5 52 52 H 1.08995 * 109.46458 * 54.15818 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3053 0.0006 5 6 2.4273 -1.6847 -1.4362 6 7 3.1611 -2.9573 -1.4356 7 6 3.7315 -3.2364 -2.7597 8 6 4.3613 -4.6312 -2.7616 9 6 5.4541 -4.6939 -1.6909 10 6 6.0460 -6.1041 -1.6464 11 1 5.2604 -6.8205 -1.4057 12 6 6.6487 -6.4475 -3.0101 13 7 7.0917 -6.1627 -0.6222 14 6 7.3994 -7.3385 -0.0397 15 8 6.8140 -8.3490 -0.3672 16 6 8.4708 -7.3978 1.0184 17 16 8.6496 -9.1021 1.6012 18 6 9.9283 -8.8849 2.7939 19 1 10.3457 -7.9037 2.9656 20 6 10.3983 -9.9747 3.5136 21 7 9.8892 -11.1705 3.3048 22 14 11.7544 -9.7447 4.7776 23 1 11.3000 -8.7931 5.8233 24 1 12.0749 -11.0527 5.4034 25 1 12.9666 -9.2054 4.1105 26 6 4.8434 -4.3520 -0.3290 27 6 4.1997 -2.9654 -0.3976 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5401 -0.9352 0.0004 30 1 3.1352 1.1057 -0.0005 31 1 1.8003 1.8766 -0.8900 32 1 1.8003 1.8766 0.8899 33 1 1.4384 -2.0853 0.4353 34 1 2.9741 -1.1988 0.5900 35 1 3.0522 -0.9046 -1.8709 36 1 1.5165 -1.7912 -2.0257 37 1 4.4947 -2.4931 -2.9905 38 1 2.9431 -3.1929 -3.5111 39 1 4.7983 -4.8318 -3.7398 40 1 3.5962 -5.3768 -2.5450 41 1 6.2394 -3.9766 -1.9295 42 1 7.4342 -5.7311 -3.2510 43 1 7.0707 -7.4519 -2.9783 44 1 5.8709 -6.4037 -3.7726 45 1 7.5599 -5.3545 -0.3602 46 1 9.4166 -7.0571 0.5972 47 1 8.1925 -6.7551 1.8536 48 1 10.2179 -11.9320 3.8075 49 1 4.0856 -5.0928 -0.0736 50 1 5.6250 -4.3533 0.4308 51 1 4.9606 -2.2233 -0.6394 52 1 3.7515 -2.7251 0.5665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717977271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:34 Heat of formation + Delta-G solvation = -38.034553 kcal Electronic energy + Delta-G solvation = -27045.921832 eV Core-core repulsion = 23364.063143 eV Total energy + Delta-G solvation = -3681.858690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.11798 -38.97446 -37.14212 -35.63483 -33.09325 -32.41212 -31.33479 -30.87552 -28.96111 -28.20570 -27.62262 -25.54468 -25.35937 -23.24617 -22.67092 -21.08251 -20.36208 -19.79122 -18.73247 -17.82052 -16.64134 -16.25566 -15.95202 -15.71456 -15.21454 -14.94975 -14.83400 -14.79116 -14.44769 -14.13209 -14.02890 -13.89880 -13.67745 -13.41266 -13.25208 -12.99364 -12.84786 -12.59100 -12.47833 -12.17456 -12.09478 -11.94833 -11.84265 -11.50443 -11.44561 -11.26547 -11.21664 -11.03055 -11.02945 -10.77993 -10.75547 -10.56316 -10.43045 -9.80175 -9.40584 -9.31580 -9.04787 -8.82465 -8.61453 -8.21588 -6.47817 -6.19979 -3.90312 1.80097 3.07035 3.15621 3.24274 3.28506 3.32742 3.54010 3.75258 4.22116 4.37752 4.44083 4.46877 4.53326 4.60907 4.75554 4.84526 4.98065 5.01845 5.10165 5.12518 5.14934 5.16744 5.19292 5.22854 5.23917 5.30506 5.38222 5.46233 5.49885 5.51754 5.53684 5.56248 5.62853 5.64904 5.69392 5.73762 5.77764 5.84640 5.91851 5.94209 6.07367 6.16476 6.20635 6.23081 6.31134 6.45325 6.73413 6.77424 6.79378 7.60640 7.78404 8.36480 8.68435 9.25107 10.87369 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.001897 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.324943 B =14760.037176 C =16047.149551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.091 4.091 5 C 0.064 3.936 6 N -0.538 5.538 7 C 0.058 3.942 8 C -0.110 4.110 9 C -0.093 4.093 10 C 0.149 3.851 11 H 0.088 0.912 12 C -0.165 4.165 13 N -0.733 5.733 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.112 4.112 27 C 0.050 3.950 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.395 0.605 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.269 0.731 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.031 0.969 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.958 24.806 -11.891 31.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.125 4.125 3 C -0.177 4.177 4 C -0.129 4.129 5 C -0.064 4.064 6 N -0.263 5.263 7 C -0.069 4.069 8 C -0.148 4.148 9 C -0.113 4.113 10 C 0.044 3.956 11 H 0.106 0.894 12 C -0.223 4.223 13 N -0.387 5.387 14 C 0.319 3.681 15 O -0.392 6.392 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.150 4.150 27 C -0.078 4.078 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.229 0.771 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.089 0.911 51 H 0.049 0.951 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.260 22.527 -12.289 30.379 hybrid contribution 2.371 2.419 1.120 3.568 sum -13.888 24.946 -11.169 30.658 Atomic orbital electron populations 1.23699 0.95298 1.01940 1.02321 1.21729 0.95432 0.95589 0.99795 1.20862 1.00048 0.94794 1.02026 1.20899 1.00472 0.94579 0.96904 1.22048 0.98275 0.89486 0.96575 1.62012 1.26987 1.32300 1.04982 1.22067 0.97740 0.96692 0.90434 1.21652 0.97682 0.96902 0.98565 1.21472 0.97509 0.96249 0.96029 1.20886 0.90415 0.96505 0.87767 0.89381 1.22236 1.01018 1.02526 0.96549 1.46079 1.40388 1.10478 1.41781 1.20273 0.83346 0.82856 0.81628 1.90696 1.51859 1.33906 1.62748 1.23537 0.99252 1.08269 0.99389 1.85391 1.49763 0.99399 1.48747 1.22832 1.23323 0.97258 1.25031 0.91027 1.24988 0.97081 0.94456 0.97041 1.70008 1.41046 0.99112 1.40114 0.86234 0.81122 0.77597 0.80598 1.19950 1.20811 1.19974 1.21643 1.00101 0.96599 0.96635 1.22235 0.92659 0.97047 0.95850 0.88592 0.88295 0.92091 0.91659 0.91529 0.90288 0.90806 0.94938 0.90661 0.95009 0.90757 0.90883 0.90583 0.91157 0.92792 0.91765 0.91730 0.77108 0.89374 0.89351 0.92145 0.90701 0.91147 0.95099 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.22 13.93 29.02 0.40 -0.82 16 2 C -0.12 -0.81 5.31 -101.06 -0.54 -1.34 16 3 C -0.12 -0.65 10.05 36.00 0.36 -0.29 16 4 C -0.09 -0.62 4.54 -27.88 -0.13 -0.75 16 5 C 0.06 0.45 5.25 -3.83 -0.02 0.43 16 6 N -0.54 -4.37 4.81 -234.68 -1.13 -5.50 16 7 C 0.06 0.44 5.42 -3.83 -0.02 0.41 16 8 C -0.11 -0.86 4.95 -26.65 -0.13 -1.00 16 9 C -0.09 -0.81 1.89 -90.50 -0.17 -0.99 16 10 C 0.15 1.73 2.16 -67.93 -0.15 1.58 16 11 H 0.09 1.24 7.57 -51.93 -0.39 0.85 16 12 C -0.16 -1.82 9.13 37.16 0.34 -1.48 16 13 N -0.73 -9.65 4.43 -53.81 -0.24 -9.89 16 14 C 0.53 9.89 7.82 -10.98 -0.09 9.80 16 15 O -0.52 -11.75 15.52 5.55 0.09 -11.67 16 16 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 C -0.11 -1.03 5.18 -26.65 -0.14 -1.16 16 27 C 0.05 0.40 4.85 -3.84 -0.02 0.38 16 28 H 0.10 0.52 8.05 -52.49 -0.42 0.09 16 29 H 0.10 0.60 7.99 -52.49 -0.42 0.18 16 30 H 0.06 0.32 8.00 -51.93 -0.42 -0.09 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.59 7.99 -51.93 -0.41 0.18 16 34 H 0.07 0.50 6.20 -51.93 -0.32 0.18 16 35 H 0.03 0.23 8.08 -51.93 -0.42 -0.19 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.51 8.12 -51.93 -0.42 0.08 16 39 H 0.07 0.51 6.58 -51.93 -0.34 0.17 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.59 6.49 -51.93 -0.34 0.25 16 45 H 0.40 4.13 8.42 -40.82 -0.34 3.78 16 46 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 47 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 50 H 0.07 0.65 7.56 -51.93 -0.39 0.26 16 51 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 52 H 0.08 0.64 5.81 -51.93 -0.30 0.34 16 LS Contribution 421.75 15.07 6.36 6.36 Total: -1.00 -33.48 421.75 -10.86 -44.34 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -9.56 Total: 0.42 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 0.13 Total: -11.13 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: -0.63 Total: -40.93 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.48 -10.86 -44.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717977271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.305 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds