Wall clock time and date at job start Sat Apr 11 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81396 * 103.00310 * 2 1 4 4 C 1.52999 * 109.47423 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46940 * 305.00191 * 4 3 2 6 6 C 1.52999 * 109.47151 * 65.00214 * 4 3 2 7 7 C 1.50694 * 109.47001 * 185.00338 * 4 3 2 8 8 O 1.21282 * 120.00432 * 346.51119 * 7 4 3 9 9 N 1.34783 * 119.99970 * 166.51681 * 7 4 3 10 10 C 1.47454 * 118.68238 * 353.25646 * 9 7 4 11 11 C 1.53995 * 112.20912 * 138.00031 * 10 9 7 12 12 C 1.50813 * 110.41834 * 319.22875 * 11 10 9 13 13 C 1.52849 * 109.44534 * 91.63950 * 12 11 10 14 14 C 1.46795 * 113.95345 * 275.86720 * 13 12 11 15 15 C 1.54735 * 112.84767 * 300.74635 * 14 13 12 16 16 C 1.54393 * 102.90504 * 273.43482 * 15 14 13 17 17 N 1.47063 * 107.28935 * 338.25026 * 16 15 14 18 18 C 1.36941 * 125.64155 * 178.89580 * 17 16 15 19 19 H 1.07997 * 119.99479 * 179.97438 * 18 17 16 20 20 C 1.38811 * 119.99580 * 359.96879 * 18 17 16 21 21 N 1.31618 * 120.00389 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99542 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47111 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46984 * 120.00520 * 22 20 18 25 25 H 1.48500 * 109.47067 * 240.00518 * 22 20 18 26 26 C 1.47521 * 108.71880 * 358.89464 * 17 16 15 27 27 C 1.44729 * 118.68220 * 173.28006 * 9 7 4 28 28 H 1.09005 * 109.47095 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47158 * 299.99613 * 1 2 3 30 30 H 1.08998 * 109.47112 * 60.00368 * 1 2 3 31 31 H 1.09007 * 109.46878 * 60.00090 * 3 2 1 32 32 H 1.08997 * 109.47113 * 300.00240 * 3 2 1 33 33 H 1.08994 * 109.47376 * 174.76498 * 6 4 3 34 34 H 1.08999 * 109.46935 * 294.76271 * 6 4 3 35 35 H 1.08998 * 109.47052 * 54.76067 * 6 4 3 36 36 H 1.08997 * 108.93254 * 17.29408 * 10 9 7 37 37 H 1.09004 * 108.93345 * 258.70292 * 10 9 7 38 38 H 1.09007 * 109.31451 * 198.94194 * 11 10 9 39 39 H 1.08996 * 109.31621 * 79.52022 * 11 10 9 40 40 H 1.09005 * 109.47572 * 331.65122 * 12 11 10 41 41 H 1.09001 * 109.48338 * 211.63396 * 12 11 10 42 42 H 1.08993 * 108.58984 * 154.70492 * 13 12 11 43 43 H 1.09006 * 108.47167 * 36.93257 * 13 12 11 44 44 H 1.08995 * 110.73118 * 155.08113 * 15 14 13 45 45 H 1.09001 * 110.72250 * 31.78449 * 15 14 13 46 46 H 1.09001 * 109.87855 * 218.82650 * 16 15 14 47 47 H 1.09002 * 109.88241 * 97.66895 * 16 15 14 48 48 H 0.97001 * 119.99907 * 179.97438 * 21 20 18 49 49 H 1.08997 * 110.37534 * 142.58683 * 26 17 16 50 50 H 1.09006 * 110.36943 * 264.92546 * 26 17 16 51 51 H 1.09011 * 109.52260 * 150.55960 * 27 9 7 52 52 H 1.08998 * 109.52850 * 30.35931 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.1694 1.3952 0.8427 6 6 4.3184 1.3915 -1.3064 7 6 4.0819 3.4028 0.1246 8 8 3.2212 4.2413 -0.0404 9 7 5.3421 3.7796 0.4186 10 6 6.3300 2.7399 0.7610 11 6 7.6987 2.9986 0.1044 12 6 7.5194 3.4852 -1.3117 13 6 7.4687 5.0128 -1.3224 14 6 6.1397 5.5670 -1.0372 15 6 5.0650 5.1018 -2.0487 16 6 5.1949 6.1344 -3.1891 17 7 5.8341 7.3321 -2.6236 18 6 6.1477 8.4714 -3.3156 19 1 6.6176 9.3000 -2.8068 20 6 5.8616 8.5609 -4.6710 21 7 5.2886 7.5511 -5.2908 22 14 6.2901 10.1148 -5.6152 23 1 6.9227 11.0943 -4.6956 24 1 7.2357 9.7832 -6.7111 25 1 5.0529 10.7020 -6.1896 26 6 6.0815 7.1032 -1.1874 27 6 5.6713 5.1886 0.3861 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8032 2.2371 0.8901 32 1 1.8032 2.2371 -0.8899 33 1 5.3879 1.5977 -1.3469 34 1 4.1539 0.3150 -1.3525 35 1 3.8236 1.8711 -2.1509 36 1 5.9550 1.7723 0.4276 37 1 6.4561 2.7145 1.8434 38 1 8.2758 2.0739 0.0975 39 1 8.2375 3.7521 0.6789 40 1 6.5889 3.0879 -1.7174 41 1 8.3563 3.1451 -1.9217 42 1 7.7886 5.3642 -2.3032 43 1 8.1686 5.3868 -0.5751 44 1 4.0715 5.1429 -1.6024 45 1 5.2852 4.0975 -2.4108 46 1 4.2070 6.3881 -3.5737 47 1 5.8131 5.7273 -3.9893 48 1 5.0884 7.6139 -6.2379 49 1 7.0303 7.5497 -0.8899 50 1 5.2653 7.5122 -0.5918 51 1 6.4706 5.3925 1.0988 52 1 4.7904 5.7747 0.6477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724122844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:45 Heat of formation + Delta-G solvation = -29.067113 kcal Electronic energy + Delta-G solvation = -30109.210475 eV Core-core repulsion = 26427.740643 eV Total energy + Delta-G solvation = -3681.469832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.09204 -39.81830 -37.59909 -35.82919 -34.85575 -34.23303 -32.27917 -30.51476 -29.92594 -28.60933 -28.23466 -27.45334 -25.99075 -25.08736 -23.81568 -22.09800 -21.68607 -20.00064 -19.50093 -18.68986 -18.57447 -17.26086 -16.88701 -16.81112 -16.51450 -16.34708 -16.04057 -15.63176 -15.21817 -15.04312 -14.66201 -14.60716 -14.44329 -14.30727 -14.01333 -13.92573 -13.82561 -13.79070 -13.26093 -13.13084 -12.99425 -12.87679 -12.81463 -12.72001 -12.61656 -12.37996 -12.26078 -12.04290 -11.99709 -11.86787 -11.69801 -11.58166 -11.21642 -11.18888 -11.10098 -10.99589 -10.72519 -10.56354 -9.45926 -8.89751 -8.64669 -7.85586 -5.21624 0.65641 1.41668 1.43812 1.54089 1.58262 1.63954 2.15165 2.47840 3.32074 3.46793 3.54812 3.63099 3.71499 3.81481 3.91552 4.06649 4.06923 4.13346 4.25532 4.31666 4.35644 4.37721 4.45679 4.49600 4.51555 4.62212 4.65559 4.67727 4.73148 4.77216 4.87372 4.88901 4.89072 4.91501 4.94854 5.05957 5.07516 5.23667 5.24119 5.27553 5.34733 5.40495 5.43885 5.55442 5.60833 5.67236 5.78696 5.80537 6.17439 6.43850 7.08196 7.24514 7.76565 8.43121 9.24996 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.003281 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.612766 B = 8532.563462 C = 9619.168947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.269 6.269 3 C -0.062 4.062 4 C -0.084 4.084 5 H 0.128 0.872 6 C -0.144 4.144 7 C 0.513 3.487 8 O -0.576 6.576 9 N -0.594 5.594 10 C 0.095 3.905 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.090 4.090 14 C -0.064 4.064 15 C -0.122 4.122 16 C 0.197 3.803 17 N -0.623 5.623 18 C -0.240 4.240 19 H 0.083 0.917 20 C -0.071 4.071 21 N -0.953 5.953 22 Si 0.981 3.019 23 H -0.263 1.263 24 H -0.290 1.290 25 H -0.294 1.294 26 C 0.141 3.859 27 C 0.137 3.863 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.064 0.936 46 H -0.014 1.014 47 H 0.005 0.995 48 H 0.244 0.756 49 H 0.047 0.953 50 H 0.014 0.986 51 H 0.102 0.898 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.858 -19.729 17.045 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.043 6.043 3 C -0.211 4.211 4 C -0.106 4.106 5 H 0.146 0.854 6 C -0.202 4.202 7 C 0.301 3.699 8 O -0.456 6.456 9 N -0.325 5.325 10 C -0.026 4.026 11 C -0.161 4.161 12 C -0.152 4.152 13 C -0.128 4.128 14 C -0.066 4.066 15 C -0.160 4.160 16 C 0.071 3.929 17 N -0.349 5.349 18 C -0.369 4.369 19 H 0.101 0.899 20 C -0.264 4.264 21 N -0.603 5.603 22 Si 0.809 3.191 23 H -0.187 1.187 24 H -0.217 1.217 25 H -0.222 1.222 26 C 0.016 3.984 27 C 0.012 3.988 28 H 0.136 0.864 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.004 0.996 47 H 0.023 0.977 48 H 0.054 0.946 49 H 0.066 0.934 50 H 0.032 0.968 51 H 0.120 0.880 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.099 -20.079 16.809 26.209 hybrid contribution -1.176 2.482 -1.412 3.088 sum -0.076 -17.597 15.397 23.382 Atomic orbital electron populations 1.23477 0.92210 1.07596 1.05505 1.86557 1.09740 1.09899 1.98096 1.23127 0.98351 0.94475 1.05112 1.21044 0.94522 0.92244 1.02819 0.85402 1.21924 1.01631 1.02561 0.94067 1.20961 0.82363 0.91356 0.75215 1.90676 1.48839 1.54903 1.51226 1.47677 1.09840 1.07223 1.67728 1.22428 0.88653 0.90413 1.01104 1.21742 0.96191 1.03569 0.94575 1.21137 1.01936 0.93717 0.98377 1.20180 0.94983 0.96820 1.00810 1.20878 0.95896 0.94331 0.95527 1.22949 0.99318 0.97528 0.96172 1.20755 0.93553 0.85839 0.92731 1.44799 1.70641 1.14255 1.05183 1.19533 1.32716 0.92963 0.91667 0.89874 1.25711 1.01659 1.01236 0.97754 1.70256 1.48867 1.32051 1.09103 0.84974 0.76929 0.78835 0.78394 1.18723 1.21714 1.22151 1.21728 0.97561 0.94231 0.84915 1.21361 1.00828 0.81534 0.95028 0.86395 0.89796 0.90422 0.90127 0.91208 0.90303 0.89102 0.93847 0.88127 0.89091 0.87841 0.90670 0.92407 0.91377 0.95580 0.90733 0.91445 0.91752 0.99586 0.97655 0.94636 0.93425 0.96817 0.87956 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 10.76 113.37 1.22 -0.38 16 2 S -0.27 -4.77 21.29 -56.49 -1.20 -5.98 16 3 C -0.06 -1.32 4.70 71.98 0.34 -0.98 16 4 C -0.08 -1.64 1.85 -11.54 -0.02 -1.66 16 5 H 0.13 1.77 6.97 -2.39 -0.02 1.76 16 6 C -0.14 -2.72 8.49 71.98 0.61 -2.11 16 7 C 0.51 13.61 5.56 87.65 0.49 14.10 16 8 O -0.58 -21.01 13.13 -3.03 -0.04 -21.05 16 9 N -0.59 -13.27 2.07 -818.74 -1.69 -14.96 16 10 C 0.09 1.24 5.37 86.53 0.47 1.71 16 11 C -0.12 -1.62 5.68 30.22 0.17 -1.44 16 12 C -0.11 -2.49 5.43 29.83 0.16 -2.33 16 13 C -0.09 -2.71 4.13 28.62 0.12 -2.59 16 14 C -0.06 -2.22 0.49 -52.49 -0.03 -2.24 16 15 C -0.12 -5.09 4.42 31.66 0.14 -4.95 16 16 C 0.20 10.80 5.23 86.75 0.45 11.26 16 17 N -0.62 -34.38 3.40 -692.39 -2.35 -36.73 16 18 C -0.24 -14.21 10.28 84.03 0.86 -13.35 16 19 H 0.08 4.68 7.83 -2.91 -0.02 4.66 16 20 C -0.07 -4.28 5.49 84.86 0.47 -3.81 16 21 N -0.95 -61.06 10.31 21.65 0.22 -60.84 16 22 Si 0.98 48.00 29.55 68.60 2.03 50.03 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 25 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 26 C 0.14 6.11 6.19 86.68 0.54 6.65 16 27 C 0.14 3.73 4.47 87.24 0.39 4.12 16 28 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 33 H 0.08 1.33 4.80 -2.39 -0.01 1.32 16 34 H 0.09 1.45 7.32 -2.39 -0.02 1.44 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.02 4.38 -2.39 -0.01 1.01 16 37 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.07 0.94 7.34 -2.39 -0.02 0.93 16 40 H 0.06 1.42 3.86 -2.38 -0.01 1.41 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.03 1.00 8.02 -2.39 -0.02 0.98 16 43 H 0.07 1.90 7.40 -2.38 -0.02 1.88 16 44 H 0.07 3.05 5.08 -2.39 -0.01 3.04 16 45 H 0.06 2.50 6.11 -2.39 -0.01 2.48 16 46 H -0.01 -0.90 7.51 -2.39 -0.02 -0.92 16 47 H 0.01 0.32 7.38 -2.39 -0.02 0.30 16 48 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 49 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 50 H 0.01 0.62 7.64 -2.38 -0.02 0.61 16 51 H 0.10 2.15 8.09 -2.38 -0.02 2.13 16 52 H 0.06 2.02 6.80 -2.39 -0.02 2.00 16 Total: -1.00 -78.07 385.72 4.24 -73.84 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.90 Total: 13.71 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 6.38 Total: 1.98 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -3.82 Total: -112.53 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.04 Total: -21.05 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Atomic # 16 Polarization: -4.77 SS G_CDS: -1.20 Total: -5.98 kcal Total: -78.07 4.24 -73.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724122844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.771 kcal (2) G-P(sol) polarization free energy of solvation -78.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds