Wall clock time and date at job start Sat Apr 11 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47019 * 2 1 4 4 C 1.46845 * 110.99936 * 293.95761 * 3 2 1 5 5 C 1.53043 * 109.52214 * 185.83959 * 4 3 2 6 6 C 1.53122 * 109.27629 * 300.81654 * 5 4 3 7 7 C 1.53123 * 109.15772 * 57.65546 * 6 5 4 8 8 H 1.09002 * 109.50358 * 62.32647 * 7 6 5 9 9 C 1.53004 * 109.50088 * 182.40190 * 7 6 5 10 10 H 1.09000 * 109.58785 * 173.44855 * 9 7 6 11 11 C 1.53191 * 109.58327 * 53.02660 * 9 7 6 12 12 C 1.53044 * 109.31052 * 185.57955 * 11 9 7 13 13 C 1.53038 * 109.54163 * 61.36125 * 12 11 9 14 14 C 1.53189 * 109.30947 * 298.63701 * 13 12 11 15 15 N 1.46925 * 109.58705 * 293.73635 * 9 7 6 16 16 C 1.34772 * 120.63209 * 353.36935 * 15 9 7 17 17 O 1.21281 * 119.99779 * 354.03662 * 16 15 9 18 18 C 1.50695 * 120.00070 * 174.03180 * 16 15 9 19 19 S 1.80995 * 109.47241 * 179.97438 * 18 16 15 20 20 C 1.76205 * 100.00247 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99721 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00195 * 180.02562 * 20 19 18 23 23 N 1.31636 * 119.99973 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47353 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47267 * 119.99791 * 24 22 20 27 27 H 1.48498 * 109.47441 * 240.00143 * 24 22 20 28 28 C 1.46851 * 110.99329 * 58.20334 * 3 2 1 29 29 H 1.08992 * 109.47329 * 299.99598 * 1 2 3 30 30 H 1.09002 * 109.47517 * 60.00184 * 1 2 3 31 31 H 1.09000 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47412 * 240.00482 * 2 1 3 33 33 H 1.08994 * 109.47218 * 119.99865 * 2 1 3 34 34 H 1.08996 * 109.46431 * 65.82125 * 4 3 2 35 35 H 1.09001 * 109.46435 * 305.84863 * 4 3 2 36 36 H 1.08996 * 109.50507 * 180.88009 * 5 4 3 37 37 H 1.08997 * 109.50467 * 60.75802 * 5 4 3 38 38 H 1.08999 * 109.52306 * 297.75116 * 6 5 4 39 39 H 1.08997 * 109.52118 * 177.55777 * 6 5 4 40 40 H 1.08994 * 109.50408 * 65.62576 * 11 9 7 41 41 H 1.09002 * 109.49660 * 305.52133 * 11 9 7 42 42 H 1.09001 * 109.45856 * 301.33714 * 12 11 9 43 43 H 1.09010 * 109.46137 * 181.38430 * 12 11 9 44 44 H 1.08998 * 109.49332 * 58.58978 * 13 12 11 45 45 H 1.08998 * 109.49767 * 178.68409 * 13 12 11 46 46 H 1.09002 * 109.58251 * 174.41997 * 14 13 12 47 47 H 1.09002 * 109.58619 * 294.84360 * 14 13 12 48 48 H 1.08996 * 109.47252 * 300.00494 * 18 16 15 49 49 H 1.09007 * 109.46890 * 60.00573 * 18 16 15 50 50 H 0.97001 * 119.99518 * 179.97438 * 23 22 20 51 51 H 1.09008 * 109.49376 * 54.16556 * 28 3 2 52 52 H 1.08998 * 109.43208 * 294.19853 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0667 -1.2528 5 6 2.3183 3.4529 -1.2788 6 6 1.8232 4.2650 -0.0788 7 6 2.1566 3.5099 1.2109 8 1 3.2379 3.4075 1.3035 9 6 1.6123 4.2856 2.4122 10 1 1.7453 3.6956 3.3189 11 6 0.1238 4.5802 2.2014 12 6 -0.3810 5.4738 3.3368 13 6 0.3810 6.8008 3.3212 14 6 1.8724 6.5313 3.5446 15 7 2.3326 5.5595 2.5433 16 6 3.3955 5.8311 1.7605 17 8 3.8325 4.9804 1.0148 18 6 4.0408 7.1919 1.8117 19 16 5.4317 7.2440 0.6548 20 6 5.9832 8.8974 0.9133 21 1 5.4741 9.5315 1.6242 22 6 7.0716 9.3850 0.2035 23 7 7.6917 8.6124 -0.6633 24 14 7.6566 11.1376 0.4781 25 1 6.7974 11.7924 1.4970 26 1 9.0631 11.1212 0.9543 27 1 7.5748 11.8926 -0.7980 28 6 1.5139 2.1218 1.1653 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.5873 2.1708 -1.3198 35 1 2.0316 1.4810 -2.0981 36 1 2.0460 3.9647 -2.2018 37 1 3.4021 3.3489 -1.2257 38 1 0.7444 4.4023 -0.1520 39 1 2.3154 5.2375 -0.0691 40 1 -0.4355 3.6447 2.1986 41 1 -0.0147 5.0904 1.2481 42 1 -0.2196 4.9735 4.2917 43 1 -1.4458 5.6648 3.2026 44 1 0.2401 7.2899 2.3574 45 1 0.0049 7.4457 4.1154 46 1 2.4319 7.4604 3.4361 47 1 2.0245 6.1254 4.5448 48 1 3.3095 7.9515 1.5357 49 1 4.4017 7.3851 2.8220 50 1 8.4522 8.9534 -1.1596 51 1 1.7619 1.5766 2.0761 52 1 0.4316 2.2250 1.0873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724864056.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:51 Heat of formation + Delta-G solvation = -15.130695 kcal Electronic energy + Delta-G solvation = -29549.985711 eV Core-core repulsion = 25869.120207 eV Total energy + Delta-G solvation = -3680.865504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.91189 -38.68897 -37.16196 -34.65065 -32.78868 -32.41051 -32.26421 -29.67527 -28.99409 -28.79004 -25.52797 -25.07306 -24.61345 -23.93050 -22.21921 -21.19271 -21.03006 -19.11824 -18.68173 -17.55595 -16.60096 -15.82543 -15.68906 -15.27564 -15.00995 -14.78976 -14.71794 -14.59173 -14.40677 -14.16527 -13.96633 -13.84618 -13.46609 -13.15333 -12.87467 -12.79497 -12.49632 -12.42870 -12.27769 -12.05688 -11.91693 -11.70723 -11.41561 -11.29607 -11.15911 -11.06536 -10.99330 -10.86547 -10.77898 -10.74094 -10.65994 -10.17260 -9.96925 -9.86540 -9.76233 -9.05620 -8.51881 -8.31386 -8.18898 -8.09838 -6.46572 -6.20216 -3.89724 2.97043 3.10502 3.22154 3.27327 3.31849 3.62066 3.95973 4.21905 4.61677 4.69070 4.73267 4.85309 4.89780 4.94278 5.05259 5.08858 5.15065 5.15164 5.21622 5.24751 5.30058 5.35955 5.43925 5.50940 5.54807 5.58095 5.60122 5.63180 5.68381 5.74727 5.77442 5.79085 5.85474 5.86806 5.89316 5.94052 5.95215 6.01395 6.05847 6.15926 6.19429 6.26535 6.39692 6.57707 6.69548 6.77623 7.08740 7.18518 7.20641 7.61264 7.68695 8.36888 8.69017 9.25484 10.87091 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.003304 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.558231 B = 8473.026366 C =10050.804836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.050 3.950 3 N -0.532 5.532 4 C 0.058 3.942 5 C -0.112 4.112 6 C -0.105 4.105 7 C -0.096 4.096 8 H 0.134 0.866 9 C 0.158 3.842 10 H 0.065 0.935 11 C -0.137 4.137 12 C -0.118 4.118 13 C -0.136 4.136 14 C 0.109 3.891 15 N -0.614 5.614 16 C 0.531 3.469 17 O -0.493 6.493 18 C -0.153 4.153 19 S -0.058 6.058 20 C -0.534 4.534 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.917 3.083 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.058 3.942 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.027 0.973 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.267 0.733 51 H 0.065 0.935 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.618 -11.657 6.627 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.078 4.078 3 N -0.255 5.255 4 C -0.070 4.070 5 C -0.149 4.149 6 C -0.143 4.143 7 C -0.114 4.114 8 H 0.151 0.849 9 C 0.054 3.946 10 H 0.083 0.917 11 C -0.175 4.175 12 C -0.156 4.156 13 C -0.174 4.174 14 C -0.015 4.015 15 N -0.350 5.350 16 C 0.319 3.681 17 O -0.368 6.368 18 C -0.304 4.304 19 S 0.169 5.831 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.743 3.257 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.070 4.070 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.077 0.923 51 H 0.084 0.916 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -17.294 -12.944 5.417 22.270 hybrid contribution -1.249 2.202 1.084 2.754 sum -18.543 -10.742 6.501 22.394 Atomic orbital electron populations 1.22442 0.98671 1.01952 1.02015 1.22150 0.92524 0.90547 1.02558 1.62012 1.59350 1.01514 1.02607 1.22109 0.97328 0.95995 0.91540 1.21494 1.02221 0.93435 0.97799 1.21839 0.98204 1.00443 0.93768 1.22013 1.04817 0.91559 0.93025 0.84850 1.21146 0.90585 0.84252 0.98593 0.91692 1.22130 0.95791 0.99985 0.99570 1.21509 0.99344 0.95901 0.98817 1.21920 0.95191 0.97603 1.02671 1.21699 0.94906 0.93302 0.91581 1.48034 1.30920 1.17929 1.38117 1.20197 0.79298 0.89435 0.79147 1.90654 1.61644 1.46089 1.38412 1.23618 1.04238 0.96305 1.06228 1.85350 1.29991 1.18041 1.49698 1.22902 1.18493 0.98376 1.28461 0.91040 1.24977 0.95509 0.98538 0.94550 1.70030 1.20430 1.35888 1.23880 0.86146 0.78595 0.82749 0.78178 1.19665 1.20593 1.20606 1.22241 0.96453 0.95298 0.92995 0.92488 0.92640 0.92417 0.90922 0.90903 0.95466 0.91420 0.92324 0.90258 0.94253 0.90110 0.91334 0.90784 0.92039 0.92045 0.91355 0.90969 0.89284 0.91668 0.89626 0.89620 0.92289 0.91611 0.95266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.64 9.21 37.16 0.34 -1.29 16 2 C 0.05 0.50 6.08 -3.82 -0.02 0.47 16 3 N -0.53 -6.60 4.86 -234.66 -1.14 -7.74 16 4 C 0.06 0.72 5.05 -3.83 -0.02 0.70 16 5 C -0.11 -1.64 6.09 -26.65 -0.16 -1.80 16 6 C -0.11 -1.56 3.87 -26.60 -0.10 -1.67 16 7 C -0.10 -1.33 1.59 -90.54 -0.14 -1.48 16 8 H 0.13 2.38 5.56 -53.84 -0.30 2.08 16 9 C 0.16 1.92 2.65 -67.60 -0.18 1.74 16 10 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.14 -1.37 4.66 -26.61 -0.12 -1.50 16 12 C -0.12 -1.01 5.88 -26.69 -0.16 -1.17 16 13 C -0.14 -1.24 6.08 -26.61 -0.16 -1.40 16 14 C 0.11 1.19 6.35 -3.71 -0.02 1.16 16 15 N -0.61 -8.43 2.94 -165.22 -0.49 -8.92 16 16 C 0.53 9.50 6.31 -10.99 -0.07 9.43 16 17 O -0.49 -10.04 9.75 5.56 0.05 -9.98 16 18 C -0.15 -3.04 4.51 36.00 0.16 -2.88 16 19 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 20 C -0.53 -15.07 9.50 30.94 0.29 -14.78 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.52 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 24 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 C 0.06 0.69 3.93 -3.83 -0.02 0.68 16 29 H 0.06 0.50 6.50 -51.93 -0.34 0.16 16 30 H 0.05 0.50 6.68 -51.93 -0.35 0.15 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.03 0.32 6.75 -51.93 -0.35 -0.03 16 35 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.04 0.53 6.08 -51.93 -0.32 0.22 16 39 H 0.08 1.45 5.12 -51.93 -0.27 1.19 16 40 H 0.07 0.62 6.89 -51.93 -0.36 0.26 16 41 H 0.07 0.84 5.97 -51.93 -0.31 0.53 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.09 1.61 7.93 -51.92 -0.41 1.20 16 49 H 0.09 1.61 7.70 -51.91 -0.40 1.21 16 50 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.07 0.74 8.12 -51.92 -0.42 0.32 16 52 H 0.03 0.32 5.19 -51.93 -0.27 0.05 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -31.40 387.58 -11.72 -43.12 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -9.00 Total: 2.13 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.48 Total: -11.79 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -0.89 Total: -41.92 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.05 Total: -9.98 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.40 -11.72 -43.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724864056.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.985 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds