Wall clock time and date at job start Sat Apr 11 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47019 * 2 1 4 4 C 1.46845 * 110.99936 * 293.95761 * 3 2 1 5 5 C 1.53043 * 109.52214 * 185.83959 * 4 3 2 6 6 C 1.53122 * 109.27629 * 300.81654 * 5 4 3 7 7 C 1.53123 * 109.15772 * 57.65546 * 6 5 4 8 8 H 1.09002 * 109.50358 * 62.32647 * 7 6 5 9 9 C 1.53004 * 109.50088 * 182.40190 * 7 6 5 10 10 H 1.09000 * 109.58785 * 173.44855 * 9 7 6 11 11 C 1.53191 * 109.58327 * 53.02660 * 9 7 6 12 12 C 1.53044 * 109.31052 * 185.57955 * 11 9 7 13 13 C 1.53038 * 109.54163 * 61.36125 * 12 11 9 14 14 C 1.53189 * 109.30947 * 298.63701 * 13 12 11 15 15 N 1.46925 * 109.58705 * 293.73635 * 9 7 6 16 16 C 1.34772 * 120.63209 * 353.36935 * 15 9 7 17 17 O 1.21281 * 119.99779 * 354.03662 * 16 15 9 18 18 C 1.50695 * 120.00070 * 174.03180 * 16 15 9 19 19 S 1.80995 * 109.47241 * 179.97438 * 18 16 15 20 20 C 1.76205 * 100.00247 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99721 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00195 * 180.02562 * 20 19 18 23 23 N 1.31636 * 119.99973 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47353 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47267 * 119.99791 * 24 22 20 27 27 H 1.48498 * 109.47441 * 240.00143 * 24 22 20 28 28 C 1.46851 * 110.99329 * 58.20334 * 3 2 1 29 29 H 1.08992 * 109.47329 * 299.99598 * 1 2 3 30 30 H 1.09002 * 109.47517 * 60.00184 * 1 2 3 31 31 H 1.09000 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47412 * 240.00482 * 2 1 3 33 33 H 1.08994 * 109.47218 * 119.99865 * 2 1 3 34 34 H 1.08996 * 109.46431 * 65.82125 * 4 3 2 35 35 H 1.09001 * 109.46435 * 305.84863 * 4 3 2 36 36 H 1.08996 * 109.50507 * 180.88009 * 5 4 3 37 37 H 1.08997 * 109.50467 * 60.75802 * 5 4 3 38 38 H 1.08999 * 109.52306 * 297.75116 * 6 5 4 39 39 H 1.08997 * 109.52118 * 177.55777 * 6 5 4 40 40 H 1.08994 * 109.50408 * 65.62576 * 11 9 7 41 41 H 1.09002 * 109.49660 * 305.52133 * 11 9 7 42 42 H 1.09001 * 109.45856 * 301.33714 * 12 11 9 43 43 H 1.09010 * 109.46137 * 181.38430 * 12 11 9 44 44 H 1.08998 * 109.49332 * 58.58978 * 13 12 11 45 45 H 1.08998 * 109.49767 * 178.68409 * 13 12 11 46 46 H 1.09002 * 109.58251 * 174.41997 * 14 13 12 47 47 H 1.09002 * 109.58619 * 294.84360 * 14 13 12 48 48 H 1.08996 * 109.47252 * 300.00494 * 18 16 15 49 49 H 1.09007 * 109.46890 * 60.00573 * 18 16 15 50 50 H 0.97001 * 119.99518 * 179.97438 * 23 22 20 51 51 H 1.09008 * 109.49376 * 54.16556 * 28 3 2 52 52 H 1.08998 * 109.43208 * 294.19853 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0667 -1.2528 5 6 2.3183 3.4529 -1.2788 6 6 1.8232 4.2650 -0.0788 7 6 2.1566 3.5099 1.2109 8 1 3.2379 3.4075 1.3035 9 6 1.6123 4.2856 2.4122 10 1 1.7453 3.6956 3.3189 11 6 0.1238 4.5802 2.2014 12 6 -0.3810 5.4738 3.3368 13 6 0.3810 6.8008 3.3212 14 6 1.8724 6.5313 3.5446 15 7 2.3326 5.5595 2.5433 16 6 3.3955 5.8311 1.7605 17 8 3.8325 4.9804 1.0148 18 6 4.0408 7.1919 1.8117 19 16 5.4317 7.2440 0.6548 20 6 5.9832 8.8974 0.9133 21 1 5.4741 9.5315 1.6242 22 6 7.0716 9.3850 0.2035 23 7 7.6917 8.6124 -0.6633 24 14 7.6566 11.1376 0.4781 25 1 6.7974 11.7924 1.4970 26 1 9.0631 11.1212 0.9543 27 1 7.5748 11.8926 -0.7980 28 6 1.5139 2.1218 1.1653 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.5873 2.1708 -1.3198 35 1 2.0316 1.4810 -2.0981 36 1 2.0460 3.9647 -2.2018 37 1 3.4021 3.3489 -1.2257 38 1 0.7444 4.4023 -0.1520 39 1 2.3154 5.2375 -0.0691 40 1 -0.4355 3.6447 2.1986 41 1 -0.0147 5.0904 1.2481 42 1 -0.2196 4.9735 4.2917 43 1 -1.4458 5.6648 3.2026 44 1 0.2401 7.2899 2.3574 45 1 0.0049 7.4457 4.1154 46 1 2.4319 7.4604 3.4361 47 1 2.0245 6.1254 4.5448 48 1 3.3095 7.9515 1.5357 49 1 4.4017 7.3851 2.8220 50 1 8.4522 8.9534 -1.1596 51 1 1.7619 1.5766 2.0761 52 1 0.4316 2.2250 1.0873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724864056.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:50 Heat of formation + Delta-G solvation = -34.305904 kcal Electronic energy + Delta-G solvation = -29550.817210 eV Core-core repulsion = 25869.120207 eV Total energy + Delta-G solvation = -3681.697003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.06648 -39.73590 -38.27864 -35.65130 -34.58077 -33.84088 -33.26866 -30.70183 -30.33516 -29.72121 -27.67944 -26.11591 -25.54999 -24.86322 -23.25982 -22.20018 -21.96238 -20.28958 -20.01285 -19.29069 -17.82793 -17.00711 -16.93446 -16.87226 -16.35250 -16.11187 -15.73232 -15.63142 -15.45769 -15.28316 -15.06725 -14.91304 -14.57196 -14.43249 -14.25192 -14.02004 -13.75415 -13.41648 -13.24821 -13.13992 -13.02371 -12.97736 -12.90592 -12.61900 -12.58331 -12.42429 -12.19629 -12.00032 -11.68620 -11.65559 -11.63864 -11.57545 -11.25137 -11.15393 -11.05065 -10.96934 -10.22002 -9.81729 -9.42516 -9.06249 -8.63030 -8.34205 -6.10647 1.27869 1.40131 1.46963 1.57731 1.70304 2.16996 2.28784 2.99692 3.01873 3.30065 3.66702 3.82879 3.86672 3.96300 4.01263 4.09680 4.10945 4.17035 4.25257 4.28985 4.35022 4.36456 4.40905 4.48209 4.50095 4.54827 4.58374 4.65251 4.68154 4.71315 4.76562 4.87898 4.94119 4.98187 5.01889 5.02269 5.08444 5.11392 5.18727 5.23942 5.27813 5.31746 5.39036 5.41881 5.46259 5.55826 5.59566 5.95989 6.20065 6.23274 6.30241 6.45927 7.07278 7.34743 8.74939 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.003304 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.558231 B = 8473.026366 C =10050.804836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 N -0.556 5.556 4 C 0.068 3.932 5 C -0.112 4.112 6 C -0.096 4.096 7 C -0.089 4.089 8 H 0.090 0.910 9 C 0.156 3.844 10 H 0.081 0.919 11 C -0.129 4.129 12 C -0.114 4.114 13 C -0.131 4.131 14 C 0.099 3.901 15 N -0.604 5.604 16 C 0.527 3.473 17 O -0.525 6.525 18 C -0.127 4.127 19 S -0.141 6.141 20 C -0.545 4.545 21 H 0.078 0.922 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.996 3.004 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.274 1.274 28 C 0.067 3.933 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.056 0.944 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.270 0.730 51 H 0.074 0.926 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.564 -11.591 8.822 26.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.078 4.078 3 N -0.280 5.280 4 C -0.060 4.060 5 C -0.150 4.150 6 C -0.133 4.133 7 C -0.108 4.108 8 H 0.108 0.892 9 C 0.053 3.947 10 H 0.099 0.901 11 C -0.167 4.167 12 C -0.151 4.151 13 C -0.169 4.169 14 C -0.023 4.023 15 N -0.338 5.338 16 C 0.315 3.685 17 O -0.403 6.403 18 C -0.278 4.278 19 S 0.086 5.914 20 C -0.693 4.693 21 H 0.097 0.903 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.061 4.061 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.079 0.921 51 H 0.092 0.908 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.283 -12.887 7.647 25.219 hybrid contribution -0.378 2.107 0.438 2.185 sum -20.662 -10.781 8.085 24.668 Atomic orbital electron populations 1.22364 0.97198 1.02942 1.01832 1.22198 0.93724 0.88836 1.03000 1.61968 1.60546 1.02859 1.02593 1.21969 0.97709 0.94273 0.92045 1.21454 0.99954 0.95558 0.98048 1.21689 0.98486 0.98641 0.94523 1.21745 1.02472 0.93265 0.93331 0.89222 1.21319 0.91816 0.83267 0.98294 0.90148 1.22074 0.93843 1.01198 0.99627 1.21509 1.00011 0.94949 0.98645 1.21904 0.93659 0.98542 1.02796 1.21997 0.96265 0.92407 0.91615 1.48027 1.29411 1.19106 1.37274 1.19899 0.80468 0.88269 0.79890 1.90703 1.63022 1.46539 1.40021 1.23436 1.01512 0.98446 1.04394 1.85497 1.34043 1.18720 1.53148 1.23221 1.18880 0.98570 1.28643 0.90345 1.26093 0.95500 1.03525 0.93984 1.70192 1.21103 1.38317 1.25077 0.84941 0.78193 0.76520 0.78521 1.18127 1.19908 1.19930 1.22144 0.97021 0.93746 0.93206 0.92298 0.93052 0.90899 0.90703 0.90363 0.94021 0.90942 0.92263 0.94190 0.92604 0.93862 0.89439 0.92345 0.90545 0.90393 0.92825 0.88541 0.90030 0.89470 0.88637 0.88371 0.92063 0.90755 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 9.21 71.98 0.66 -1.97 16 2 C 0.05 0.90 6.08 86.30 0.52 1.42 16 3 N -0.56 -13.46 4.86 -896.34 -4.35 -17.81 16 4 C 0.07 1.66 5.05 86.33 0.44 2.10 16 5 C -0.11 -3.50 6.09 30.65 0.19 -3.31 16 6 C -0.10 -2.96 3.87 30.68 0.12 -2.84 16 7 C -0.09 -2.51 1.59 -10.74 -0.02 -2.52 16 8 H 0.09 3.39 5.56 -32.69 -0.18 3.21 16 9 C 0.16 3.56 2.65 44.98 0.12 3.68 16 10 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 11 C -0.13 -2.22 4.66 30.67 0.14 -2.08 16 12 C -0.11 -1.48 5.88 30.62 0.18 -1.30 16 13 C -0.13 -1.99 6.08 30.67 0.19 -1.81 16 14 C 0.10 1.96 6.35 86.36 0.55 2.51 16 15 N -0.60 -16.20 2.94 -795.04 -2.34 -18.54 16 16 C 0.53 19.58 6.31 87.66 0.55 20.13 16 17 O -0.53 -22.95 9.75 -3.03 -0.03 -22.98 16 18 C -0.13 -5.18 4.51 71.23 0.32 -4.86 16 19 S -0.14 -7.90 20.57 -56.49 -1.16 -9.07 16 20 C -0.55 -31.52 9.50 67.95 0.65 -30.88 16 21 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 22 C 0.01 0.79 5.49 84.86 0.47 1.25 16 23 N -0.91 -56.43 13.22 21.65 0.29 -56.15 16 24 Si 1.00 44.15 29.55 68.60 2.03 46.18 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 C 0.07 1.49 3.93 86.32 0.34 1.83 16 29 H 0.06 0.82 6.50 -2.39 -0.02 0.81 16 30 H 0.05 0.78 6.68 -2.39 -0.02 0.77 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 1.30 8.06 -2.39 -0.02 1.28 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 0.91 6.75 -2.39 -0.02 0.89 16 35 H 0.07 1.69 8.06 -2.39 -0.02 1.67 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.50 6.08 -2.39 -0.01 1.49 16 39 H 0.04 1.66 5.12 -2.39 -0.01 1.65 16 40 H 0.09 1.21 6.89 -2.39 -0.02 1.20 16 41 H 0.06 1.21 5.97 -2.39 -0.01 1.20 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 0.83 8.14 -2.38 -0.02 0.82 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.08 1.73 5.93 -2.39 -0.01 1.72 16 47 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.10 3.67 7.93 -2.40 -0.02 3.65 16 49 H 0.10 3.72 7.70 -2.39 -0.02 3.70 16 50 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 51 H 0.07 1.53 8.12 -2.38 -0.02 1.51 16 52 H 0.05 0.89 5.19 -2.39 -0.01 0.87 16 Total: -1.00 -73.07 387.58 0.57 -72.50 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.72 Total: 24.51 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 5.42 Total: -18.65 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -6.40 Total: -92.50 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.03 Total: -22.98 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.16 Total: -9.07 kcal Total: -73.07 0.57 -72.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724864056.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.194 kcal (2) G-P(sol) polarization free energy of solvation -73.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds