Wall clock time and date at job start Sat Apr 11 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.47047 * 2 1 4 4 C 1.46850 * 110.99728 * 66.05056 * 3 2 1 5 5 C 1.53040 * 109.52301 * 174.16268 * 4 3 2 6 6 C 1.53117 * 109.27854 * 59.17406 * 5 4 3 7 7 C 1.53117 * 109.16329 * 302.34690 * 6 5 4 8 8 H 1.09003 * 109.50400 * 297.71690 * 7 6 5 9 9 C 1.52991 * 109.50498 * 177.63622 * 7 6 5 10 10 H 1.09003 * 109.58905 * 51.73948 * 9 7 6 11 11 C 1.53191 * 109.58663 * 291.45622 * 9 7 6 12 12 C 1.53046 * 109.31253 * 185.57777 * 11 9 7 13 13 C 1.53036 * 109.53963 * 61.36274 * 12 11 9 14 14 C 1.53192 * 109.31274 * 298.63588 * 13 12 11 15 15 N 1.46923 * 109.58999 * 172.16439 * 9 7 6 16 16 C 1.34780 * 120.63320 * 353.39841 * 15 9 7 17 17 O 1.21283 * 119.99253 * 2.95485 * 16 15 9 18 18 C 1.50694 * 120.00532 * 182.95235 * 16 15 9 19 19 S 1.81001 * 109.47171 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00012 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99581 * 0.02562 * 20 19 18 22 22 C 1.38796 * 119.99921 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00136 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99697 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47170 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46717 * 120.00201 * 24 22 20 27 27 H 1.48500 * 109.46938 * 240.00022 * 24 22 20 28 28 C 1.46844 * 111.00274 * 301.83858 * 3 2 1 29 29 H 1.09001 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47036 * 299.99409 * 1 2 3 31 31 H 1.08995 * 109.47231 * 59.99671 * 1 2 3 32 32 H 1.08999 * 109.46814 * 240.00154 * 2 1 3 33 33 H 1.09004 * 109.47318 * 120.00194 * 2 1 3 34 34 H 1.09001 * 109.46002 * 294.17544 * 4 3 2 35 35 H 1.09001 * 109.46751 * 54.15319 * 4 3 2 36 36 H 1.09000 * 109.49937 * 179.12256 * 5 4 3 37 37 H 1.09008 * 109.49717 * 299.19620 * 5 4 3 38 38 H 1.08992 * 109.52154 * 62.25376 * 6 5 4 39 39 H 1.09002 * 109.51854 * 182.44340 * 6 5 4 40 40 H 1.08993 * 109.49623 * 305.52546 * 11 9 7 41 41 H 1.08995 * 109.49842 * 65.59751 * 11 9 7 42 42 H 1.09001 * 109.45764 * 181.38772 * 12 11 9 43 43 H 1.09008 * 109.46050 * 301.33908 * 12 11 9 44 44 H 1.09003 * 109.49340 * 58.58709 * 13 12 11 45 45 H 1.09000 * 109.49724 * 178.65095 * 13 12 11 46 46 H 1.09000 * 109.58372 * 174.42005 * 14 13 12 47 47 H 1.08996 * 109.58690 * 294.70437 * 14 13 12 48 48 H 1.09001 * 109.47134 * 300.00256 * 18 16 15 49 49 H 1.08997 * 109.46861 * 59.99844 * 18 16 15 50 50 H 0.96995 * 119.99884 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.46187 * 305.85569 * 28 3 2 52 52 H 1.09001 * 109.46054 * 65.81977 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6704 2.0666 1.2529 5 6 2.3184 3.4527 1.2790 6 6 1.8234 4.2649 0.0790 7 6 2.1567 3.5100 -1.2108 8 1 3.2379 3.4069 -1.3030 9 6 1.6132 4.2862 -2.4119 10 1 1.9532 5.3207 -2.3627 11 6 0.0818 4.2478 -2.3980 12 6 -0.4526 4.9046 -3.6728 13 6 0.0390 4.1254 -4.8948 14 6 1.5699 4.1625 -4.9370 15 7 2.0905 3.6666 -3.6557 16 6 2.9888 2.6624 -3.6220 17 8 3.3705 2.2259 -2.5567 18 6 3.5188 2.0819 -4.9077 19 16 4.6983 0.7613 -4.5324 20 6 5.1447 0.2762 -6.1664 21 1 4.7045 0.7754 -7.0171 22 6 6.0618 -0.7473 -6.3604 23 7 6.5977 -1.3560 -5.3236 24 14 6.5355 -1.2611 -8.0928 25 1 5.7982 -0.4269 -9.0756 26 1 7.9964 -1.0739 -8.2825 27 1 6.1889 -2.6905 -8.2974 28 6 1.5133 2.1222 -1.1646 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.5874 2.1707 1.3200 35 1 2.0319 1.4809 2.0981 36 1 2.0462 3.9644 2.2021 37 1 3.4023 3.3487 1.2265 38 1 0.7446 4.4022 0.1523 39 1 2.3155 5.2374 0.0695 40 1 -0.2557 3.2124 -2.3532 41 1 -0.2878 4.7889 -1.5270 42 1 -1.5425 4.9006 -3.6539 43 1 -0.0944 5.9326 -3.7293 44 1 -0.2982 3.0911 -4.8265 45 1 -0.3615 4.5795 -5.8011 46 1 1.9285 3.5278 -5.7473 47 1 1.9063 5.1865 -5.0988 48 1 2.6922 1.6764 -5.4912 49 1 4.0186 2.8632 -5.4801 50 1 7.2384 -2.0716 -5.4592 51 1 1.7606 1.5768 -2.0754 52 1 0.4311 2.2260 -1.0862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724864058.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:54 Heat of formation + Delta-G solvation = -10.953703 kcal Electronic energy + Delta-G solvation = -29910.062660 eV Core-core repulsion = 26229.378284 eV Total energy + Delta-G solvation = -3680.684376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92134 -38.46954 -37.16361 -34.65481 -32.86573 -32.40544 -32.25138 -29.38863 -28.93155 -28.79182 -25.50903 -24.96924 -24.63063 -23.95991 -22.08759 -21.16890 -20.95377 -19.15652 -18.62438 -17.52484 -16.56982 -15.76558 -15.64733 -15.36554 -14.98614 -14.78051 -14.56070 -14.45307 -14.32362 -14.05591 -13.94928 -13.73406 -13.39709 -13.02781 -12.88490 -12.75688 -12.50412 -12.47383 -12.32223 -12.18869 -11.75326 -11.57259 -11.37490 -11.24072 -11.06023 -10.98402 -10.91768 -10.83225 -10.73284 -10.71339 -10.57911 -10.29980 -10.09092 -9.87275 -9.74825 -9.04318 -8.50360 -8.22371 -8.15418 -7.81029 -6.44349 -6.18764 -3.87976 2.99816 3.12518 3.22828 3.28226 3.32644 3.65549 4.17900 4.23317 4.61042 4.69197 4.72593 4.90949 4.97171 5.03097 5.09060 5.14335 5.16423 5.20806 5.22795 5.33621 5.38408 5.41191 5.48661 5.51631 5.58251 5.62148 5.65950 5.68193 5.74021 5.78669 5.83225 5.87281 5.90157 5.94181 5.95831 5.99141 5.99586 6.07026 6.13426 6.18167 6.19107 6.27470 6.32016 6.38076 6.61751 6.64631 7.02634 7.46317 7.52711 7.62485 7.69622 8.38165 8.71145 9.26897 10.88485 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.003798 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.506907 B = 7369.568360 C = 8795.749410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.052 3.948 3 N -0.521 5.521 4 C 0.054 3.946 5 C -0.113 4.113 6 C -0.121 4.121 7 C -0.090 4.090 8 H 0.127 0.873 9 C 0.157 3.843 10 H 0.067 0.933 11 C -0.137 4.137 12 C -0.118 4.118 13 C -0.135 4.135 14 C 0.109 3.891 15 N -0.615 5.615 16 C 0.519 3.481 17 O -0.480 6.480 18 C -0.152 4.152 19 S -0.055 6.055 20 C -0.535 4.535 21 H 0.071 0.929 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.916 3.084 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.076 3.924 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.025 0.975 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.267 0.733 51 H 0.095 0.905 52 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.743 12.658 7.915 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.076 4.076 3 N -0.244 5.244 4 C -0.074 4.074 5 C -0.150 4.150 6 C -0.159 4.159 7 C -0.109 4.109 8 H 0.144 0.856 9 C 0.053 3.947 10 H 0.085 0.915 11 C -0.175 4.175 12 C -0.156 4.156 13 C -0.174 4.174 14 C -0.015 4.015 15 N -0.352 5.352 16 C 0.308 3.692 17 O -0.354 6.354 18 C -0.303 4.303 19 S 0.172 5.828 20 C -0.683 4.683 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.742 3.258 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.051 4.051 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.077 0.923 51 H 0.113 0.887 52 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -14.517 11.847 9.523 21.019 hybrid contribution -1.224 0.264 -2.421 2.726 sum -15.742 12.111 7.102 21.093 Atomic orbital electron populations 1.22434 0.99091 1.01867 1.01450 1.22126 0.92000 0.90448 1.03017 1.61964 1.59285 1.01466 1.01706 1.22072 0.97055 0.95272 0.92973 1.21510 1.01637 0.94701 0.97191 1.21775 1.00014 0.98511 0.95634 1.21927 1.05039 0.93071 0.90814 0.85579 1.21206 0.92995 0.96347 0.84105 0.91492 1.22133 0.95811 1.01874 0.97707 1.21506 1.00154 0.99222 0.94673 1.21918 0.95691 1.01336 0.98411 1.21675 0.93603 1.00000 0.86186 1.48064 1.44157 1.36613 1.06338 1.20270 0.78814 0.78879 0.91282 1.90787 1.56908 1.58320 1.29394 1.23607 1.04245 1.04503 0.97929 1.85389 1.49134 1.37258 1.11043 1.22916 1.30055 1.22907 0.92464 0.91083 1.24963 0.95212 0.95344 0.97963 1.70026 1.27846 1.22822 1.29530 0.86166 0.78376 0.78439 0.82808 1.19666 1.20597 1.20612 1.22492 0.93716 0.94344 0.94529 0.92428 0.93124 0.92666 0.90094 0.91248 0.95699 0.91519 0.92307 0.90952 0.92997 0.92372 0.91034 0.91196 0.92063 0.91998 0.91440 0.90958 0.89334 0.91733 0.89810 0.89687 0.92306 0.88744 0.96807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 9.21 37.16 0.34 -1.91 16 2 C 0.05 0.74 6.08 -3.82 -0.02 0.72 16 3 N -0.52 -7.89 4.86 -234.66 -1.14 -9.02 16 4 C 0.05 0.68 5.05 -3.83 -0.02 0.66 16 5 C -0.11 -1.31 6.09 -26.65 -0.16 -1.47 16 6 C -0.12 -1.38 5.14 -26.61 -0.14 -1.52 16 7 C -0.09 -1.25 1.58 -90.55 -0.14 -1.39 16 8 H 0.13 2.23 5.71 -53.20 -0.30 1.93 16 9 C 0.16 1.91 2.64 -67.61 -0.18 1.73 16 10 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 11 C -0.14 -1.38 4.65 -26.61 -0.12 -1.51 16 12 C -0.12 -1.01 5.88 -26.69 -0.16 -1.17 16 13 C -0.14 -1.24 6.08 -26.61 -0.16 -1.40 16 14 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 15 N -0.62 -8.43 2.94 -165.23 -0.49 -8.92 16 16 C 0.52 9.29 6.69 -10.99 -0.07 9.21 16 17 O -0.48 -9.76 9.23 5.55 0.05 -9.71 16 18 C -0.15 -3.03 4.52 36.00 0.16 -2.87 16 19 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 20 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 C 0.08 1.14 2.51 -3.84 -0.01 1.13 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.56 6.68 -51.93 -0.35 0.21 16 31 H 0.05 0.69 6.51 -51.93 -0.34 0.35 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 34 H 0.02 0.30 6.75 -51.93 -0.35 -0.05 16 35 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 38 H 0.05 0.54 6.74 -51.93 -0.35 0.19 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.83 5.98 -51.93 -0.31 0.51 16 41 H 0.07 0.63 6.92 -51.93 -0.36 0.28 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 1.01 5.95 -51.93 -0.31 0.70 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 1.57 7.57 -51.92 -0.39 1.18 16 49 H 0.08 1.61 8.05 -51.92 -0.42 1.19 16 50 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 51 H 0.09 1.73 5.13 -51.90 -0.27 1.46 16 52 H 0.01 0.20 4.62 -51.93 -0.24 -0.04 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -31.59 387.57 -11.76 -43.36 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -9.02 Total: 2.55 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.51 Total: -11.46 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.89 Total: -43.28 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.05 Total: -9.71 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.59 -11.76 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724864058.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.403 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds