Wall clock time and date at job start Sat Apr 11 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.47047 * 2 1 4 4 C 1.46850 * 110.99728 * 66.05056 * 3 2 1 5 5 C 1.53040 * 109.52301 * 174.16268 * 4 3 2 6 6 C 1.53117 * 109.27854 * 59.17406 * 5 4 3 7 7 C 1.53117 * 109.16329 * 302.34690 * 6 5 4 8 8 H 1.09003 * 109.50400 * 297.71690 * 7 6 5 9 9 C 1.52991 * 109.50498 * 177.63622 * 7 6 5 10 10 H 1.09003 * 109.58905 * 51.73948 * 9 7 6 11 11 C 1.53191 * 109.58663 * 291.45622 * 9 7 6 12 12 C 1.53046 * 109.31253 * 185.57777 * 11 9 7 13 13 C 1.53036 * 109.53963 * 61.36274 * 12 11 9 14 14 C 1.53192 * 109.31274 * 298.63588 * 13 12 11 15 15 N 1.46923 * 109.58999 * 172.16439 * 9 7 6 16 16 C 1.34780 * 120.63320 * 353.39841 * 15 9 7 17 17 O 1.21283 * 119.99253 * 2.95485 * 16 15 9 18 18 C 1.50694 * 120.00532 * 182.95235 * 16 15 9 19 19 S 1.81001 * 109.47171 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00012 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99581 * 0.02562 * 20 19 18 22 22 C 1.38796 * 119.99921 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00136 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99697 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47170 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46717 * 120.00201 * 24 22 20 27 27 H 1.48500 * 109.46938 * 240.00022 * 24 22 20 28 28 C 1.46844 * 111.00274 * 301.83858 * 3 2 1 29 29 H 1.09001 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47036 * 299.99409 * 1 2 3 31 31 H 1.08995 * 109.47231 * 59.99671 * 1 2 3 32 32 H 1.08999 * 109.46814 * 240.00154 * 2 1 3 33 33 H 1.09004 * 109.47318 * 120.00194 * 2 1 3 34 34 H 1.09001 * 109.46002 * 294.17544 * 4 3 2 35 35 H 1.09001 * 109.46751 * 54.15319 * 4 3 2 36 36 H 1.09000 * 109.49937 * 179.12256 * 5 4 3 37 37 H 1.09008 * 109.49717 * 299.19620 * 5 4 3 38 38 H 1.08992 * 109.52154 * 62.25376 * 6 5 4 39 39 H 1.09002 * 109.51854 * 182.44340 * 6 5 4 40 40 H 1.08993 * 109.49623 * 305.52546 * 11 9 7 41 41 H 1.08995 * 109.49842 * 65.59751 * 11 9 7 42 42 H 1.09001 * 109.45764 * 181.38772 * 12 11 9 43 43 H 1.09008 * 109.46050 * 301.33908 * 12 11 9 44 44 H 1.09003 * 109.49340 * 58.58709 * 13 12 11 45 45 H 1.09000 * 109.49724 * 178.65095 * 13 12 11 46 46 H 1.09000 * 109.58372 * 174.42005 * 14 13 12 47 47 H 1.08996 * 109.58690 * 294.70437 * 14 13 12 48 48 H 1.09001 * 109.47134 * 300.00256 * 18 16 15 49 49 H 1.08997 * 109.46861 * 59.99844 * 18 16 15 50 50 H 0.96995 * 119.99884 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.46187 * 305.85569 * 28 3 2 52 52 H 1.09001 * 109.46054 * 65.81977 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6704 2.0666 1.2529 5 6 2.3184 3.4527 1.2790 6 6 1.8234 4.2649 0.0790 7 6 2.1567 3.5100 -1.2108 8 1 3.2379 3.4069 -1.3030 9 6 1.6132 4.2862 -2.4119 10 1 1.9532 5.3207 -2.3627 11 6 0.0818 4.2478 -2.3980 12 6 -0.4526 4.9046 -3.6728 13 6 0.0390 4.1254 -4.8948 14 6 1.5699 4.1625 -4.9370 15 7 2.0905 3.6666 -3.6557 16 6 2.9888 2.6624 -3.6220 17 8 3.3705 2.2259 -2.5567 18 6 3.5188 2.0819 -4.9077 19 16 4.6983 0.7613 -4.5324 20 6 5.1447 0.2762 -6.1664 21 1 4.7045 0.7754 -7.0171 22 6 6.0618 -0.7473 -6.3604 23 7 6.5977 -1.3560 -5.3236 24 14 6.5355 -1.2611 -8.0928 25 1 5.7982 -0.4269 -9.0756 26 1 7.9964 -1.0739 -8.2825 27 1 6.1889 -2.6905 -8.2974 28 6 1.5133 2.1222 -1.1646 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.5874 2.1707 1.3200 35 1 2.0319 1.4809 2.0981 36 1 2.0462 3.9644 2.2021 37 1 3.4023 3.3487 1.2265 38 1 0.7446 4.4022 0.1523 39 1 2.3155 5.2374 0.0695 40 1 -0.2557 3.2124 -2.3532 41 1 -0.2878 4.7889 -1.5270 42 1 -1.5425 4.9006 -3.6539 43 1 -0.0944 5.9326 -3.7293 44 1 -0.2982 3.0911 -4.8265 45 1 -0.3615 4.5795 -5.8011 46 1 1.9285 3.5278 -5.7473 47 1 1.9063 5.1865 -5.0988 48 1 2.6922 1.6764 -5.4912 49 1 4.0186 2.8632 -5.4801 50 1 7.2384 -2.0716 -5.4592 51 1 1.7606 1.5768 -2.0754 52 1 0.4311 2.2260 -1.0862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724864058.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:53 Heat of formation + Delta-G solvation = -30.331869 kcal Electronic energy + Delta-G solvation = -29910.902961 eV Core-core repulsion = 26229.378284 eV Total energy + Delta-G solvation = -3681.524676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.07340 -39.60107 -38.28673 -35.70062 -34.57751 -33.92423 -33.22364 -30.51813 -30.33770 -29.76244 -27.67043 -26.04663 -25.67041 -24.89026 -23.12884 -22.26600 -21.89258 -20.35471 -19.95417 -19.24365 -17.82681 -16.97083 -16.91161 -16.86643 -16.46279 -16.13474 -15.80367 -15.57539 -15.35065 -15.20338 -14.99969 -14.90785 -14.54615 -14.37570 -14.15550 -13.90737 -13.80629 -13.66023 -13.38425 -13.21375 -13.11801 -12.93469 -12.77820 -12.61200 -12.58497 -12.32927 -12.08899 -11.87118 -11.67732 -11.65515 -11.64036 -11.55993 -11.35736 -11.15001 -11.07941 -10.94279 -10.19865 -9.81820 -9.36358 -8.91858 -8.61602 -8.33592 -6.09738 1.28547 1.40018 1.47483 1.58431 1.73323 2.19147 2.29852 3.00257 3.10951 3.30695 3.65462 3.83864 3.88881 3.99854 4.01575 4.08823 4.12889 4.15395 4.20490 4.29621 4.32277 4.35632 4.43406 4.47655 4.49786 4.51377 4.55090 4.64951 4.73397 4.75573 4.87853 4.90551 4.94197 4.99550 5.01628 5.05741 5.10023 5.11663 5.17711 5.20466 5.23431 5.25097 5.34648 5.42129 5.45554 5.52399 5.59640 5.91583 6.20414 6.36116 6.43764 6.47568 7.07876 7.37200 8.75537 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.003798 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.506907 B = 7369.568360 C = 8795.749410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 N -0.551 5.551 4 C 0.056 3.944 5 C -0.112 4.112 6 C -0.114 4.114 7 C -0.086 4.086 8 H 0.083 0.917 9 C 0.155 3.845 10 H 0.084 0.916 11 C -0.130 4.130 12 C -0.113 4.113 13 C -0.131 4.131 14 C 0.100 3.900 15 N -0.605 5.605 16 C 0.515 3.485 17 O -0.510 6.510 18 C -0.125 4.125 19 S -0.139 6.139 20 C -0.547 4.547 21 H 0.078 0.922 22 C 0.016 3.984 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.274 1.274 28 C 0.091 3.909 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.270 0.730 51 H 0.054 0.946 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.228 15.132 7.317 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.077 4.077 3 N -0.274 5.274 4 C -0.072 4.072 5 C -0.150 4.150 6 C -0.152 4.152 7 C -0.105 4.105 8 H 0.100 0.900 9 C 0.052 3.948 10 H 0.102 0.898 11 C -0.168 4.168 12 C -0.151 4.151 13 C -0.169 4.169 14 C -0.022 4.022 15 N -0.340 5.340 16 C 0.303 3.697 17 O -0.387 6.387 18 C -0.277 4.277 19 S 0.089 5.911 20 C -0.695 4.695 21 H 0.096 0.904 22 C -0.189 4.189 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.036 4.036 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.112 0.888 49 H 0.114 0.886 50 H 0.079 0.921 51 H 0.072 0.928 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -17.038 14.359 8.919 24.001 hybrid contribution -0.485 -0.448 -2.183 2.280 sum -17.522 13.912 6.736 23.365 Atomic orbital electron populations 1.22297 0.96926 1.02682 1.01638 1.22056 0.93800 0.90176 1.01626 1.61921 1.60483 1.02034 1.03011 1.22124 0.97897 0.95553 0.91626 1.21531 1.00105 0.94615 0.98722 1.21727 1.01283 0.98455 0.93754 1.21712 1.02268 0.93253 0.93273 0.89951 1.21391 0.94660 0.96320 0.82415 0.89842 1.22077 0.93626 1.01399 0.99702 1.21505 1.01089 0.99511 0.92982 1.21900 0.93919 1.00922 1.00132 1.21963 0.95134 1.00785 0.84353 1.48038 1.42593 1.34997 1.08379 1.19951 0.79894 0.80051 0.89832 1.90828 1.58363 1.59612 1.29912 1.23419 1.02520 1.02109 0.99611 1.85528 1.52117 1.41063 1.12409 1.23238 1.30332 1.23290 0.92637 0.90428 1.26067 0.94915 0.95134 1.02802 1.70189 1.28654 1.23550 1.32319 0.84965 0.78205 0.78221 0.76925 1.18144 1.19893 1.19904 1.22227 0.94185 0.94368 0.92849 0.91360 0.91606 0.93535 0.93633 0.90497 0.94337 0.91135 0.89507 0.93335 0.91012 0.91100 0.92788 0.89231 0.90457 0.90445 0.93031 0.88541 0.90194 0.89493 0.88817 0.88614 0.92074 0.92822 0.95650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.14 9.21 71.98 0.66 -3.48 16 2 C 0.05 1.54 6.08 86.30 0.52 2.06 16 3 N -0.55 -17.32 4.86 -896.34 -4.35 -21.68 16 4 C 0.06 1.34 5.05 86.33 0.44 1.78 16 5 C -0.11 -2.47 6.09 30.65 0.19 -2.28 16 6 C -0.11 -2.38 5.14 30.67 0.16 -2.23 16 7 C -0.09 -2.39 1.58 -10.75 -0.02 -2.41 16 8 H 0.08 3.08 5.71 -23.36 -0.13 2.95 16 9 C 0.16 3.52 2.64 44.97 0.12 3.64 16 10 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 11 C -0.13 -2.25 4.65 30.67 0.14 -2.11 16 12 C -0.11 -1.50 5.88 30.62 0.18 -1.32 16 13 C -0.13 -2.03 6.08 30.67 0.19 -1.84 16 14 C 0.10 1.99 6.34 86.36 0.55 2.54 16 15 N -0.60 -16.28 2.94 -795.06 -2.34 -18.62 16 16 C 0.52 19.20 6.69 87.65 0.59 19.78 16 17 O -0.51 -22.26 9.23 -3.04 -0.03 -22.29 16 18 C -0.13 -5.16 4.52 71.23 0.32 -4.84 16 19 S -0.14 -7.78 20.57 -56.49 -1.16 -8.94 16 20 C -0.55 -31.80 9.50 67.95 0.65 -31.15 16 21 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 22 C 0.02 0.90 5.49 84.86 0.47 1.37 16 23 N -0.91 -56.67 13.22 21.65 0.29 -56.38 16 24 Si 0.99 44.29 29.55 68.60 2.03 46.32 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 28 C 0.09 2.80 2.51 86.33 0.22 3.01 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.34 6.68 -2.39 -0.02 1.33 16 31 H 0.05 1.16 6.51 -2.39 -0.02 1.14 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 2.10 8.06 -2.38 -0.02 2.08 16 34 H 0.04 0.83 6.75 -2.39 -0.02 0.81 16 35 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.07 1.24 6.74 -2.39 -0.02 1.23 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.15 5.98 -2.39 -0.01 1.14 16 41 H 0.09 1.24 6.92 -2.39 -0.02 1.23 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.08 1.73 5.95 -2.39 -0.01 1.71 16 47 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.09 3.62 7.57 -2.39 -0.02 3.60 16 49 H 0.10 3.69 8.05 -2.40 -0.02 3.67 16 50 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 51 H 0.05 2.11 5.13 -2.80 -0.01 2.09 16 52 H 0.03 0.71 4.62 -2.39 -0.01 0.70 16 Total: -1.00 -73.83 387.57 0.56 -73.27 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.77 Total: 25.80 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 5.36 Total: -17.49 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -6.41 Total: -96.68 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.03 Total: -22.29 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -7.78 SS G_CDS: -1.16 Total: -8.94 kcal Total: -73.83 0.56 -73.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724864058.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.939 kcal (2) G-P(sol) polarization free energy of solvation -73.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds