Wall clock time and date at job start Sat Apr 11 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.44853 * 2 1 4 4 C 1.53028 * 109.46428 * 119.97300 * 2 1 3 5 5 C 1.53118 * 109.28015 * 179.19583 * 4 2 1 6 6 H 1.08997 * 109.57539 * 62.28352 * 5 4 2 7 7 N 1.46504 * 109.52494 * 182.43936 * 5 4 2 8 8 C 1.34774 * 120.00416 * 204.68337 * 7 5 4 9 9 O 1.21284 * 119.99822 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00195 * 180.27985 * 8 7 5 11 11 S 1.81002 * 109.46966 * 179.72427 * 10 8 7 12 12 C 1.76200 * 99.99907 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99799 * 0.02562 * 12 11 10 14 14 C 1.38803 * 119.99985 * 179.97438 * 12 11 10 15 15 N 1.31623 * 120.00023 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99921 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46774 * 60.00616 * 16 14 12 18 18 H 1.48496 * 109.47134 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47236 * 300.00650 * 16 14 12 20 20 C 1.53111 * 109.16151 * 302.34577 * 5 4 2 21 21 C 1.53040 * 109.27986 * 57.65258 * 20 5 4 22 22 N 1.46843 * 109.46218 * 240.03108 * 2 1 3 23 23 C 1.46897 * 111.00300 * 54.14156 * 22 2 1 24 24 C 1.53003 * 109.47220 * 202.21890 * 23 22 2 25 25 C 1.54262 * 110.03452 * 289.67523 * 24 23 22 26 26 C 1.54888 * 104.19720 * 217.10533 * 25 24 23 27 27 C 1.54883 * 102.74612 * 37.93886 * 26 25 24 28 28 C 1.53869 * 110.03444 * 172.50383 * 24 23 22 29 29 H 1.08999 * 109.47135 * 172.11415 * 1 2 3 30 30 H 1.08998 * 109.47097 * 292.11056 * 1 2 3 31 31 H 1.09001 * 109.47199 * 52.10896 * 1 2 3 32 32 H 1.09002 * 109.50799 * 59.25200 * 4 2 1 33 33 H 1.09006 * 109.50807 * 299.13830 * 4 2 1 34 34 H 0.97007 * 119.99651 * 24.68515 * 7 5 4 35 35 H 1.09003 * 109.46906 * 299.72106 * 10 8 7 36 36 H 1.08994 * 109.47211 * 59.72461 * 10 8 7 37 37 H 0.97002 * 120.00259 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.50841 * 177.59220 * 20 5 4 39 39 H 1.09005 * 109.50588 * 297.71064 * 20 5 4 40 40 H 1.09002 * 109.45725 * 60.83380 * 21 20 5 41 41 H 1.08997 * 109.46752 * 180.80590 * 21 20 5 42 42 H 1.08996 * 109.47240 * 322.21826 * 23 22 2 43 43 H 1.09002 * 109.47121 * 82.22018 * 23 22 2 44 44 H 1.09006 * 110.01462 * 51.11649 * 24 23 22 45 45 H 1.08999 * 110.48532 * 335.78414 * 25 24 23 46 46 H 1.09000 * 110.49146 * 98.42378 * 25 24 23 47 47 H 1.08997 * 110.75387 * 279.62626 * 26 25 24 48 48 H 1.08999 * 110.91657 * 156.32835 * 26 25 24 49 49 H 1.09004 * 110.48349 * 203.37603 * 27 26 25 50 50 H 1.09002 * 110.59912 * 80.79401 * 27 26 25 51 51 H 1.08995 * 110.03993 * 238.57305 * 28 24 23 52 52 H 1.09005 * 110.03262 * 0.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7208 1.2499 5 6 3.5710 -0.7360 1.2355 6 1 3.9466 0.2867 1.2677 7 7 4.0643 -1.4755 2.4000 8 6 5.2962 -1.2244 2.8855 9 8 5.9963 -0.3857 2.3587 10 6 5.8060 -1.9895 4.0795 11 16 7.4811 -1.4341 4.4818 12 6 7.8188 -2.4624 5.8721 13 1 7.0751 -3.1656 6.2170 14 6 9.0410 -2.3696 6.5234 15 7 9.9475 -1.5130 6.1027 16 14 9.3988 -3.4593 7.9978 17 1 9.3165 -4.8851 7.5910 18 1 10.7625 -3.1688 8.5088 19 1 8.4020 -3.1908 9.0653 20 6 4.0548 -1.4187 -0.0467 21 6 3.4865 -0.6776 -1.2591 22 7 2.0193 -0.6916 -1.1994 23 6 1.4373 -0.1104 -2.4165 24 6 1.4981 -1.1356 -3.5507 25 6 2.9591 -1.3373 -4.0030 26 6 2.8600 -1.5183 -5.5381 27 6 1.7462 -0.5155 -5.9292 28 6 0.7269 -0.6132 -4.7754 29 1 -0.3633 -1.0179 -0.1410 30 1 -0.3633 0.3868 0.9521 31 1 -0.3633 0.6312 -0.8110 32 1 1.6660 -1.7446 1.2576 33 1 1.6896 -0.1981 2.1399 34 1 3.5042 -2.1460 2.8216 35 1 5.1500 -1.8123 4.9318 36 1 5.8220 -3.0546 3.8487 37 1 10.8015 -1.4478 6.5581 38 1 5.1440 -1.3945 -0.0833 39 1 3.7126 -2.4535 -0.0595 40 1 3.8403 0.3534 -1.2532 41 1 3.8175 -1.1697 -2.1736 42 1 0.3988 0.1620 -2.2284 43 1 2.0006 0.7787 -2.6999 44 1 1.0747 -2.0839 -3.2195 45 1 3.5582 -0.4597 -3.7602 46 1 3.3821 -2.2289 -3.5403 47 1 2.5672 -2.5378 -5.7887 48 1 3.8013 -1.2582 -6.0221 49 1 1.2841 -0.8074 -6.8723 50 1 2.1477 0.4955 -5.9990 51 1 -0.0702 -1.3082 -5.0392 52 1 0.3097 0.3710 -4.5620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724988735.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:13 Heat of formation + Delta-G solvation = -74.291139 kcal Electronic energy + Delta-G solvation = -27593.802149 eV Core-core repulsion = 23910.371256 eV Total energy + Delta-G solvation = -3683.430893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.26110 -40.22210 -38.63567 -36.10737 -34.58859 -33.51150 -33.24707 -30.99683 -29.71613 -29.38834 -28.02013 -27.65624 -25.79569 -23.54831 -22.77368 -21.63560 -21.33277 -20.81667 -20.35820 -19.77499 -17.84429 -17.51634 -17.07063 -16.88032 -16.61940 -16.39246 -16.21654 -15.92858 -15.75560 -15.24701 -14.84736 -14.68607 -14.60055 -14.30598 -14.17797 -13.84686 -13.63483 -13.37844 -13.17395 -13.02705 -12.96587 -12.86425 -12.76946 -12.64727 -12.43519 -12.09434 -11.97062 -11.93585 -11.81823 -11.75357 -11.59572 -11.47294 -11.37031 -11.22079 -11.13624 -11.12500 -10.82865 -10.28429 -10.05954 -9.27238 -8.67333 -8.34714 -6.13110 1.26484 1.43807 1.46497 1.56396 1.61282 2.25132 2.29072 2.86151 2.99200 3.31585 3.64589 3.72735 3.76832 3.87332 3.88595 3.93376 4.01516 4.12136 4.28990 4.32210 4.38995 4.43341 4.45914 4.50291 4.52167 4.56288 4.59484 4.65292 4.71857 4.79904 4.85683 4.88223 4.91301 4.94789 4.97454 5.07018 5.07762 5.12675 5.13767 5.16023 5.24312 5.29076 5.37284 5.41200 5.42887 5.50524 5.52236 5.59142 6.15139 6.19329 6.20868 6.52890 7.06235 7.25887 8.74254 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023500 B = 0.001893 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.227715 B =14785.637930 C =15522.995854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 H 0.030 0.970 4 C -0.106 4.106 5 C 0.146 3.854 6 H 0.054 0.946 7 N -0.708 5.708 8 C 0.534 3.466 9 O -0.566 6.566 10 C -0.129 4.129 11 S -0.152 6.152 12 C -0.547 4.547 13 H 0.083 0.917 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.262 1.262 20 C -0.121 4.121 21 C 0.048 3.952 22 N -0.528 5.528 23 C 0.055 3.945 24 C -0.080 4.080 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.125 4.125 28 C -0.117 4.117 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.416 0.584 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.271 0.729 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.018 0.982 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.028 0.972 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.061 0.939 51 H 0.070 0.930 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.596 -0.630 -20.495 32.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 H 0.048 0.952 4 C -0.144 4.144 5 C 0.041 3.959 6 H 0.073 0.927 7 N -0.361 5.361 8 C 0.320 3.680 9 O -0.445 6.445 10 C -0.280 4.280 11 S 0.075 5.925 12 C -0.695 4.695 13 H 0.101 0.899 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.821 3.179 17 H -0.186 1.186 18 H -0.204 1.204 19 H -0.186 1.186 20 C -0.160 4.160 21 C -0.080 4.080 22 N -0.253 5.253 23 C -0.072 4.072 24 C -0.099 4.099 25 C -0.161 4.161 26 C -0.165 4.165 27 C -0.163 4.163 28 C -0.155 4.155 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.253 0.747 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.036 0.964 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.046 0.954 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.079 0.921 51 H 0.089 0.911 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.447 0.357 -21.307 32.431 hybrid contribution 0.285 -0.632 1.610 1.753 sum -24.162 -0.275 -19.696 31.174 Atomic orbital electron populations 1.21880 0.92178 1.03097 1.02600 1.21586 0.96784 0.94731 0.89581 0.95219 1.21851 0.91319 1.03225 0.98052 1.21029 0.95317 0.95030 0.84512 0.92744 1.45832 1.15618 1.42526 1.32141 1.20086 0.81860 0.82128 0.83895 1.90685 1.57471 1.35287 1.61017 1.23375 1.01576 1.03754 0.99322 1.85579 1.12579 1.54478 1.39875 1.23178 1.04720 1.25355 1.16261 0.89882 1.26145 0.94697 0.97261 1.01106 1.70178 1.06931 1.35984 1.41683 0.84996 0.77614 0.78260 0.77079 1.18641 1.20388 1.18613 1.21896 0.99262 1.00869 0.93947 1.22423 0.87961 0.98273 0.99328 1.62020 1.06162 1.54947 1.02199 1.22434 1.00480 0.95141 0.89155 1.21705 0.95287 0.98933 0.93961 1.22627 0.96779 1.00924 0.95780 1.22537 0.98858 0.99695 0.95455 1.22360 0.96273 0.99194 0.98427 1.22168 0.97946 1.01462 0.93958 0.91203 0.91116 0.91683 0.89065 0.89971 0.74687 0.87213 0.87270 0.91997 0.93802 0.90107 0.96358 0.87923 0.88975 0.95374 0.90575 0.92345 0.91862 0.91324 0.91853 0.91127 0.92055 0.91100 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.61 71.98 0.62 -0.89 16 2 C 0.08 1.27 2.44 44.94 0.11 1.38 16 3 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 4 C -0.11 -1.74 4.84 30.64 0.15 -1.59 16 5 C 0.15 3.51 2.52 45.07 0.11 3.63 16 6 H 0.05 1.66 7.58 -2.39 -0.02 1.64 16 7 N -0.71 -18.49 5.08 -442.17 -2.25 -20.74 16 8 C 0.53 20.17 7.81 87.66 0.68 20.85 16 9 O -0.57 -26.89 15.53 -3.04 -0.05 -26.94 16 10 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 11 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 12 C -0.55 -31.53 9.50 67.96 0.65 -30.88 16 13 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 14 C 0.01 0.73 5.49 84.86 0.47 1.19 16 15 N -0.91 -56.48 13.22 21.65 0.29 -56.19 16 16 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 17 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 20 C -0.12 -2.87 5.67 30.64 0.17 -2.70 16 21 C 0.05 0.97 4.83 86.33 0.42 1.39 16 22 N -0.53 -8.56 4.40 -871.12 -3.84 -12.40 16 23 C 0.06 0.75 4.20 86.30 0.36 1.11 16 24 C -0.08 -1.00 3.13 -10.07 -0.03 -1.03 16 25 C -0.12 -1.74 4.39 31.67 0.14 -1.60 16 26 C -0.13 -1.56 6.91 31.88 0.22 -1.34 16 27 C -0.12 -1.33 6.83 31.67 0.22 -1.12 16 28 C -0.12 -1.19 6.46 31.32 0.20 -0.99 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.66 8.13 -2.39 -0.02 0.64 16 31 H 0.06 0.61 6.34 -2.39 -0.02 0.59 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.22 16 34 H 0.42 7.87 8.60 -92.70 -0.80 7.07 16 35 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 36 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 37 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.10 1.92 3.86 -2.39 -0.01 1.91 16 42 H 0.09 1.02 5.35 -2.39 -0.01 1.01 16 43 H 0.03 0.43 7.76 -2.39 -0.02 0.41 16 44 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.06 0.92 6.56 -2.39 -0.02 0.90 16 46 H 0.06 0.97 7.31 -2.39 -0.02 0.95 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 49 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.07 0.63 7.67 -2.38 -0.02 0.61 16 Total: -1.00 -74.57 406.90 0.04 -74.54 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.09 Total: 22.96 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 4.93 Total: -17.33 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -5.80 Total: -89.33 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -74.57 0.04 -74.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724988735.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.245 kcal (2) G-P(sol) polarization free energy of solvation -74.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds