Wall clock time and date at job start Sat Apr 11 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.00116 * 2 1 4 4 C 1.54325 * 109.88422 * 238.89731 * 2 1 3 5 5 H 1.08996 * 110.72032 * 144.23808 * 4 2 1 6 6 N 1.46903 * 110.71450 * 21.14261 * 4 2 1 7 7 C 1.46900 * 110.99827 * 161.97989 * 6 4 2 8 8 C 1.52996 * 109.47116 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.47208 * 180.02562 * 8 7 6 10 10 C 1.54270 * 110.03341 * 292.91174 * 9 8 7 11 11 C 1.54961 * 104.15809 * 217.13632 * 10 9 8 12 12 C 1.54894 * 102.78059 * 37.88742 * 11 10 9 13 13 C 1.53875 * 110.03618 * 175.69352 * 9 8 7 14 14 C 1.55157 * 102.94287 * 262.77853 * 4 2 1 15 15 C 1.55133 * 101.48399 * 324.33084 * 14 4 2 16 16 N 1.47024 * 109.88235 * 121.09045 * 2 1 3 17 17 C 1.34781 * 125.65032 * 300.44155 * 16 2 1 18 18 O 1.21287 * 119.99494 * 359.97438 * 17 16 2 19 19 C 1.50694 * 120.00139 * 180.27641 * 17 16 2 20 20 S 1.80995 * 109.47207 * 179.72353 * 19 17 16 21 21 C 1.76199 * 100.00235 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99915 * 0.02562 * 21 20 19 23 23 C 1.38798 * 120.00114 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99796 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00244 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47060 * 90.00184 * 25 23 21 27 27 H 1.48493 * 109.47440 * 210.00233 * 25 23 21 28 28 H 1.48500 * 109.47068 * 330.00751 * 25 23 21 29 29 H 1.09004 * 109.46974 * 292.69427 * 1 2 3 30 30 H 1.08996 * 109.47411 * 52.68899 * 1 2 3 31 31 H 1.09001 * 109.47459 * 172.69451 * 1 2 3 32 32 H 1.00896 * 111.00395 * 38.02054 * 6 4 2 33 33 H 1.08998 * 109.47186 * 299.99981 * 7 6 4 34 34 H 1.09004 * 109.47136 * 59.99689 * 7 6 4 35 35 H 1.09000 * 109.47265 * 299.99749 * 8 7 6 36 36 H 1.09004 * 109.47010 * 60.00055 * 8 7 6 37 37 H 1.09002 * 110.02060 * 54.29817 * 9 8 7 38 38 H 1.09004 * 110.48171 * 335.78098 * 10 9 8 39 39 H 1.08992 * 110.48711 * 98.42703 * 10 9 8 40 40 H 1.08997 * 110.72072 * 279.56879 * 11 10 9 41 41 H 1.09003 * 110.92448 * 156.29160 * 11 10 9 42 42 H 1.09002 * 110.48067 * 203.40609 * 12 11 10 43 43 H 1.08996 * 110.48359 * 80.76055 * 12 11 10 44 44 H 1.09004 * 110.03244 * 238.57073 * 13 9 8 45 45 H 1.09005 * 110.03112 * 359.97438 * 13 9 8 46 46 H 1.08998 * 111.00450 * 82.56880 * 14 4 2 47 47 H 1.08994 * 111.00141 * 206.37828 * 14 4 2 48 48 H 1.09001 * 110.49382 * 278.44998 * 15 14 4 49 49 H 1.09001 * 110.33899 * 156.06334 * 15 14 4 50 50 H 1.09004 * 109.46978 * 299.71837 * 19 17 16 51 51 H 1.09000 * 109.47755 * 59.71914 * 19 17 16 52 52 H 0.97009 * 119.99806 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7497 -1.2426 5 1 2.9640 -0.2815 -1.6200 6 7 1.0264 -0.8029 -2.2903 7 6 1.6213 -1.1157 -3.5965 8 6 0.5219 -1.1630 -4.6594 9 6 1.1414 -1.4895 -6.0197 10 6 2.0371 -0.3233 -6.4860 11 6 1.8086 -0.2586 -8.0174 12 6 0.2972 -0.5696 -8.1517 13 6 0.0358 -1.6464 -7.0785 14 6 2.3518 -2.1696 -0.6921 15 6 2.8612 -1.8465 0.7371 16 7 2.0300 -0.7140 1.1840 17 6 1.7753 -0.3843 2.4658 18 8 1.0791 0.5763 2.7180 19 6 2.3611 -1.2051 3.5856 20 16 1.8470 -0.5103 5.1758 21 6 2.6491 -1.6313 6.2733 22 1 3.2402 -2.4442 5.8780 23 6 2.5214 -1.4697 7.6459 24 7 3.1211 -2.3069 8.4658 25 14 1.4998 -0.0634 8.3298 26 1 0.0943 -0.5107 8.5021 27 1 2.0505 0.3553 9.6438 28 1 1.5422 1.0833 7.3872 29 1 -0.3633 0.3965 0.9481 30 1 -0.3634 0.6229 -0.8173 31 1 -0.3634 -1.0193 -0.1307 32 1 0.5038 0.0593 -2.3281 33 1 2.3477 -0.3464 -3.8585 34 1 2.1196 -2.0839 -3.5463 35 1 -0.2041 -1.9326 -4.3972 36 1 0.0232 -0.1950 -4.7097 37 1 1.7270 -2.4063 -5.9527 38 1 1.7260 0.6089 -6.0144 39 1 3.0833 -0.5335 -6.2643 40 1 2.4054 -1.0140 -8.5286 41 1 2.0341 0.7357 -8.4030 42 1 0.0747 -0.9592 -9.1451 43 1 -0.2953 0.3226 -7.9492 44 1 0.0854 -2.6392 -7.5258 45 1 -0.9422 -1.4905 -6.6230 46 1 1.4451 -2.7737 -0.6601 47 1 3.1264 -2.6623 -1.2798 48 1 3.9123 -1.5589 0.7116 49 1 2.7177 -2.7047 1.3935 50 1 2.0066 -2.2329 3.5066 51 1 3.4488 -1.1897 3.5170 52 1 3.0322 -2.1938 9.4251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725562549.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:25 Heat of formation + Delta-G solvation = -73.765737 kcal Electronic energy + Delta-G solvation = -27058.879575 eV Core-core repulsion = 23375.471465 eV Total energy + Delta-G solvation = -3683.408110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.37383 -39.56623 -38.89033 -36.27813 -34.68339 -33.45717 -32.17267 -31.47371 -29.78828 -29.50271 -27.86174 -27.24309 -25.88048 -24.09986 -23.03351 -21.50125 -21.24239 -20.51574 -20.15741 -19.59119 -18.12984 -17.34803 -17.13095 -16.95157 -16.62614 -16.52286 -16.15465 -15.81597 -15.74992 -15.31679 -14.94111 -14.70361 -14.54848 -14.22861 -14.11713 -13.79237 -13.59709 -13.49451 -13.34684 -13.23074 -13.12134 -13.01686 -12.85032 -12.62007 -12.41052 -12.22896 -11.93440 -11.91537 -11.87733 -11.82283 -11.65293 -11.50606 -11.42694 -11.33027 -11.18050 -11.15388 -10.89546 -10.55309 -9.74907 -9.35879 -9.01801 -8.52462 -6.23776 0.94841 1.30585 1.44197 1.52146 1.52210 2.02402 2.24309 2.66914 2.85727 3.12417 3.31550 3.62984 3.73762 3.77378 3.79539 3.91499 4.05673 4.14779 4.23357 4.27409 4.31366 4.37302 4.38673 4.45784 4.58958 4.60488 4.62076 4.66626 4.74346 4.76941 4.79457 4.82069 4.85225 4.92969 4.99841 5.03089 5.06663 5.11300 5.20560 5.27021 5.30110 5.31989 5.33683 5.46476 5.48496 5.50987 5.61558 5.69791 6.10080 6.10419 6.34824 6.44914 6.92578 7.07227 8.59893 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.039854 B = 0.001689 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.399571 B =16577.764214 C =16900.509203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.132 3.868 3 H 0.064 0.936 4 C 0.091 3.909 5 H 0.071 0.929 6 N -0.681 5.681 7 C 0.062 3.938 8 C -0.102 4.102 9 C -0.088 4.088 10 C -0.120 4.120 11 C -0.128 4.128 12 C -0.127 4.127 13 C -0.123 4.123 14 C -0.109 4.109 15 C 0.088 3.912 16 N -0.610 5.610 17 C 0.548 3.452 18 O -0.559 6.559 19 C -0.102 4.102 20 S -0.174 6.174 21 C -0.530 4.530 22 H 0.062 0.938 23 C 0.048 3.952 24 N -0.915 5.915 25 Si 0.914 3.086 26 H -0.262 1.262 27 H -0.257 1.257 28 H -0.238 1.238 29 H 0.034 0.966 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.347 0.653 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.105 0.895 48 H 0.086 0.914 49 H 0.082 0.918 50 H 0.108 0.892 51 H 0.109 0.891 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.942 1.367 -36.329 36.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.029 3.971 3 H 0.082 0.918 4 C -0.020 4.020 5 H 0.089 0.911 6 N -0.314 5.314 7 C -0.067 4.067 8 C -0.140 4.140 9 C -0.107 4.107 10 C -0.157 4.157 11 C -0.166 4.166 12 C -0.164 4.164 13 C -0.160 4.160 14 C -0.147 4.147 15 C -0.035 4.035 16 N -0.345 5.345 17 C 0.336 3.664 18 O -0.437 6.437 19 C -0.253 4.253 20 S 0.053 5.947 21 C -0.677 4.677 22 H 0.080 0.920 23 C -0.158 4.158 24 N -0.553 5.553 25 Si 0.735 3.265 26 H -0.187 1.187 27 H -0.181 1.181 28 H -0.162 1.162 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.167 0.833 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.123 0.877 48 H 0.105 0.895 49 H 0.101 0.899 50 H 0.126 0.874 51 H 0.128 0.872 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.103 2.085 -35.579 35.775 hybrid contribution 1.007 -0.064 0.541 1.145 sum -2.096 2.021 -35.038 35.159 Atomic orbital electron populations 1.21882 0.94230 1.02797 1.01445 1.21711 0.95476 0.95475 0.84486 0.91800 1.22436 0.93854 0.95948 0.89743 0.91100 1.60640 1.25136 1.41081 1.04547 1.22033 0.96215 1.00978 0.87440 1.21597 0.97579 1.01880 0.92980 1.21727 0.96290 0.98681 0.94030 1.22477 0.99492 0.98184 0.95596 1.22533 0.96232 1.01512 0.96276 1.22372 0.96427 0.98751 0.98883 1.22223 0.98637 0.99144 0.96027 1.22827 1.02575 0.96231 0.93093 1.22723 0.95268 0.88532 0.96937 1.48431 1.50819 1.31568 1.03715 1.19619 0.80009 0.84131 0.82668 1.90669 1.39675 1.29837 1.83554 1.23208 1.04883 1.02897 0.94333 1.84693 1.69058 1.42284 0.98682 1.22443 1.36048 1.15362 0.93878 0.91977 1.25535 0.95743 0.98336 0.96163 1.70015 1.43316 1.37814 1.04172 0.85880 0.79674 0.81007 0.79891 1.18693 1.18150 1.16206 0.94702 0.89842 0.91747 0.83262 0.94652 0.90827 0.91762 0.92124 0.90969 0.91832 0.91597 0.91494 0.91555 0.91551 0.91899 0.91807 0.91834 0.90179 0.87709 0.89545 0.89947 0.87387 0.87242 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.30 71.98 0.60 -2.77 16 2 C 0.13 2.91 3.41 45.34 0.15 3.06 16 3 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 4 C 0.09 1.32 3.09 46.10 0.14 1.46 16 5 H 0.07 0.90 7.93 -2.39 -0.02 0.88 16 6 N -0.68 -8.50 5.48 -485.45 -2.66 -11.16 16 7 C 0.06 0.60 5.39 86.30 0.46 1.07 16 8 C -0.10 -0.96 4.60 30.59 0.14 -0.82 16 9 C -0.09 -0.77 2.93 -10.07 -0.03 -0.79 16 10 C -0.12 -1.02 5.50 31.70 0.17 -0.84 16 11 C -0.13 -1.07 6.91 31.91 0.22 -0.85 16 12 C -0.13 -1.09 6.83 31.67 0.22 -0.87 16 13 C -0.12 -1.10 6.46 31.32 0.20 -0.90 16 14 C -0.11 -1.52 6.63 32.06 0.21 -1.31 16 15 C 0.09 1.65 6.70 86.93 0.58 2.23 16 16 N -0.61 -16.41 3.08 -787.61 -2.42 -18.84 16 17 C 0.55 20.27 7.64 87.65 0.67 20.94 16 18 O -0.56 -24.95 14.67 -3.05 -0.04 -24.99 16 19 C -0.10 -4.07 5.16 71.23 0.37 -3.70 16 20 S -0.17 -9.00 18.55 -56.49 -1.05 -10.05 16 21 C -0.53 -31.27 10.04 67.95 0.68 -30.58 16 22 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 23 C 0.05 2.83 5.50 84.86 0.47 3.30 16 24 N -0.92 -55.99 13.97 21.65 0.30 -55.69 16 25 Si 0.91 45.46 27.74 68.60 1.90 47.37 16 26 H -0.26 -12.74 7.11 99.48 0.71 -12.04 16 27 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 29 H 0.03 1.08 6.54 -2.38 -0.02 1.06 16 30 H 0.08 1.47 6.74 -2.39 -0.02 1.45 16 31 H 0.06 1.50 8.04 -2.39 -0.02 1.48 16 32 H 0.35 4.14 6.74 -89.70 -0.60 3.54 16 33 H 0.04 0.33 7.43 -2.39 -0.02 0.31 16 34 H 0.07 0.73 8.06 -2.39 -0.02 0.71 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.59 8.02 -2.39 -0.02 0.57 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 0.58 7.77 -2.38 -0.02 0.56 16 39 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.06 0.60 7.67 -2.38 -0.02 0.58 16 46 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.08 1.57 7.49 -2.39 -0.02 1.56 16 50 H 0.11 4.01 7.86 -2.39 -0.02 3.99 16 51 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 52 H 0.28 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -71.79 412.00 1.53 -70.26 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.23 Total: 14.47 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 5.26 Total: -11.38 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -4.78 Total: -85.68 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.04 Total: -24.99 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.37 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.05 Total: -10.05 kcal Total: -71.79 1.53 -70.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725562549.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.502 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds