Wall clock time and date at job start Sat Apr 11 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81402 * 102.99916 * 2 1 4 4 H 1.08995 * 109.47490 * 54.99747 * 3 2 1 5 5 C 1.53004 * 109.47067 * 294.99548 * 3 2 1 6 6 C 1.53002 * 109.47069 * 175.00003 * 3 2 1 7 7 C 1.50701 * 109.46868 * 294.99721 * 6 3 2 8 8 O 1.21275 * 119.99971 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00003 * 180.02562 * 7 6 3 10 10 C 1.46921 * 120.63253 * 180.02562 * 9 7 6 11 11 C 1.53198 * 108.77634 * 126.36886 * 10 9 7 12 12 C 1.53034 * 109.31238 * 54.63347 * 11 10 9 13 13 N 1.46505 * 109.45817 * 178.61291 * 12 11 10 14 14 C 1.36933 * 119.99613 * 60.00799 * 13 12 11 15 15 H 1.07994 * 120.00652 * 15.94752 * 14 13 12 16 16 C 1.38817 * 119.99668 * 195.95521 * 14 13 12 17 17 N 1.31616 * 120.00212 * 21.39526 * 16 14 13 18 18 Si 1.86800 * 119.99975 * 201.39789 * 16 14 13 19 19 H 1.48499 * 109.47327 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47184 * 119.99821 * 18 16 14 21 21 H 1.48500 * 109.47036 * 239.99669 * 18 16 14 22 22 C 1.46502 * 120.00066 * 239.99947 * 13 12 11 23 23 C 1.52992 * 109.47029 * 84.12087 * 22 13 12 24 24 C 1.53006 * 117.49931 * 243.62066 * 23 22 13 25 25 C 1.52998 * 59.99859 * 252.50756 * 24 23 22 26 26 C 1.53042 * 109.54155 * 298.63404 * 12 11 10 27 27 C 1.46931 * 120.62795 * 359.97438 * 9 7 6 28 28 H 1.09000 * 109.47547 * 300.00383 * 1 2 3 29 29 H 1.09004 * 109.46662 * 60.00285 * 1 2 3 30 30 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47128 * 179.97438 * 5 3 2 32 32 H 1.08995 * 109.47128 * 300.00421 * 5 3 2 33 33 H 1.09005 * 109.46558 * 60.00245 * 5 3 2 34 34 H 1.09000 * 109.46800 * 174.99822 * 6 3 2 35 35 H 1.09001 * 109.47168 * 55.00097 * 6 3 2 36 36 H 1.08996 * 109.58741 * 6.58079 * 10 9 7 37 37 H 1.09004 * 109.70330 * 246.22302 * 10 9 7 38 38 H 1.09003 * 109.49296 * 174.58877 * 11 10 9 39 39 H 1.09001 * 109.49182 * 294.68477 * 11 10 9 40 40 H 1.09003 * 109.45959 * 58.65881 * 12 11 10 41 41 H 0.97002 * 120.00714 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.46829 * 204.12270 * 22 13 12 43 43 H 1.08998 * 109.46731 * 324.12094 * 22 13 12 44 44 H 1.08999 * 115.55298 * 29.32522 * 23 22 13 45 45 H 1.08997 * 117.49760 * 0.02562 * 24 23 22 46 46 H 1.09000 * 117.49747 * 145.02142 * 24 23 22 47 47 H 1.08994 * 117.49921 * 252.50547 * 25 24 23 48 48 H 1.09005 * 117.49693 * 107.48838 * 25 24 23 49 49 H 1.09002 * 109.49643 * 301.41862 * 26 12 11 50 50 H 1.08996 * 109.49749 * 181.31707 * 26 12 11 51 51 H 1.08999 * 109.58742 * 353.41314 * 27 9 7 52 52 H 1.09001 * 109.58750 * 113.84841 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 0.8417 5 6 1.7429 2.4016 -1.3074 6 6 3.7370 1.9412 0.1257 7 6 4.1919 1.4271 1.4673 8 8 3.3841 0.9666 2.2459 9 7 5.4964 1.4789 1.8018 10 6 5.9552 0.9811 3.1057 11 6 7.0782 -0.0357 2.8780 12 6 8.1772 0.6059 2.0280 13 7 9.2681 -0.3531 1.8359 14 6 9.0264 -1.5498 1.2158 15 1 8.1203 -1.6889 0.6450 16 6 9.9461 -2.5842 1.3212 17 7 10.8104 -2.5979 2.3136 18 14 9.9569 -3.9569 0.0542 19 1 8.8931 -3.7102 -0.9520 20 1 11.2787 -3.9963 -0.6216 21 1 9.7074 -5.2557 0.7295 22 6 10.6175 -0.0315 2.3071 23 6 10.7376 -0.3861 3.7906 24 6 10.9949 0.7592 4.7721 25 6 12.1124 -0.2332 4.4444 26 6 7.6039 1.0052 0.6664 27 6 6.4869 2.0334 0.8689 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.9876 3.4637 -1.3073 32 1 2.2355 1.9149 -2.1492 33 1 0.6636 2.2778 -1.3970 34 1 3.9902 2.9976 0.0366 35 1 4.2339 1.3804 -0.6659 36 1 5.1266 0.5001 3.6254 37 1 6.3299 1.8111 3.7049 38 1 7.4928 -0.3411 3.8387 39 1 6.6796 -0.9077 2.3594 40 1 8.5582 1.4920 2.5357 41 1 11.4533 -3.3205 2.3871 42 1 11.3479 -0.6048 1.7362 43 1 10.8054 1.0336 2.1717 44 1 10.1075 -1.2081 4.1300 45 1 11.0782 1.7652 4.3609 46 1 10.5339 0.6906 5.7574 47 1 12.3866 -0.9545 5.2142 48 1 12.9313 0.1200 3.8176 49 1 7.2004 0.1234 0.1688 50 1 8.3926 1.4408 0.0531 51 1 6.0091 2.2466 -0.0873 52 1 6.9057 2.9506 1.2831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733277708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:46 Heat of formation + Delta-G solvation = 13.085420 kcal Electronic energy + Delta-G solvation = -28834.243422 eV Core-core repulsion = 25154.601461 eV Total energy + Delta-G solvation = -3679.641961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.97948 -37.72754 -36.41588 -34.71671 -34.47076 -32.08989 -30.86086 -29.85749 -29.19923 -27.81102 -26.09529 -24.76680 -22.99169 -22.42306 -21.69605 -21.47100 -19.95590 -19.35136 -18.65099 -17.08961 -16.71736 -16.23402 -15.87734 -15.32385 -15.11115 -14.52011 -14.35826 -14.21386 -13.91772 -13.68848 -13.60876 -13.55172 -13.31107 -13.07833 -12.90380 -12.88491 -12.32106 -12.21410 -12.07495 -11.87017 -11.57432 -11.49995 -11.32761 -11.26963 -10.87252 -10.76076 -10.71232 -10.61418 -10.60720 -10.24215 -9.97866 -9.88617 -9.82171 -9.65684 -9.49563 -9.13230 -8.74358 -8.34424 -8.29443 -7.47439 -6.80037 -5.72002 -3.08537 1.65597 2.55308 2.86168 3.21677 3.40398 3.50042 3.50988 4.44132 4.45730 4.51876 4.94086 4.94370 4.97533 5.00453 5.05674 5.14095 5.20538 5.24527 5.33165 5.38178 5.42125 5.51532 5.54983 5.56863 5.68073 5.73199 5.78719 5.85215 5.88905 5.99556 6.00772 6.06609 6.17794 6.28701 6.35131 6.40096 6.52859 6.58830 6.66004 6.71172 6.82718 6.92294 7.07368 7.13502 7.31457 7.53288 7.66584 7.77756 7.88221 8.39889 8.41582 9.26152 9.90178 10.36459 11.32383 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.003087 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.795919 B = 9067.795756 C =10259.201430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.231 6.231 3 C -0.045 4.045 4 H 0.092 0.908 5 C -0.148 4.148 6 C -0.123 4.123 7 C 0.509 3.491 8 O -0.528 6.528 9 N -0.606 5.606 10 C 0.114 3.886 11 C -0.136 4.136 12 C 0.182 3.818 13 N -0.588 5.588 14 C -0.248 4.248 15 H 0.071 0.929 16 C 0.002 3.998 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.294 1.294 22 C 0.206 3.794 23 C -0.079 4.079 24 C -0.225 4.225 25 C -0.184 4.184 26 C -0.143 4.143 27 C 0.108 3.892 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.250 0.750 42 H 0.081 0.919 43 H 0.008 0.992 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.075 0.925 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.786 12.766 -4.310 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.006 6.006 3 C -0.174 4.174 4 H 0.110 0.890 5 C -0.207 4.207 6 C -0.164 4.164 7 C 0.296 3.704 8 O -0.404 6.404 9 N -0.340 5.340 10 C -0.009 4.009 11 C -0.176 4.176 12 C 0.074 3.926 13 N -0.308 5.308 14 C -0.377 4.377 15 H 0.088 0.912 16 C -0.196 4.196 17 N -0.537 5.537 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.221 1.221 22 C 0.080 3.920 23 C -0.100 4.100 24 C -0.262 4.262 25 C -0.222 4.222 26 C -0.183 4.183 27 C -0.015 4.015 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.026 0.974 44 H 0.128 0.872 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.093 0.907 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.403 11.505 -3.865 17.354 hybrid contribution -0.546 0.095 -0.475 0.730 sum -12.949 11.600 -4.340 17.919 Atomic orbital electron populations 1.23376 0.95572 1.06145 1.04362 1.87191 1.05848 1.09840 1.97674 1.22874 0.97991 0.95357 1.01178 0.88999 1.22113 1.01424 1.00831 0.96302 1.21552 0.94296 1.03400 0.97186 1.20377 0.82163 0.79117 0.88750 1.90718 1.52384 1.45282 1.52026 1.48124 1.06372 1.61544 1.17964 1.21678 0.98220 0.97330 0.83652 1.22359 0.95401 0.98258 1.01593 1.20182 0.88300 0.92119 0.92013 1.44168 1.03031 1.16073 1.67491 1.19118 1.05640 0.89531 1.23406 0.91166 1.24767 1.00008 0.97181 0.97658 1.70187 1.22653 1.32778 1.28069 0.86392 0.77263 0.82257 0.81917 1.20571 1.21819 1.22096 1.20265 0.87086 0.93575 0.91029 1.23024 0.96037 0.95869 0.95061 1.23100 1.06163 0.95513 1.01423 1.22599 0.93584 1.02084 1.03934 1.22391 0.96608 0.98443 1.00852 1.21817 0.90287 0.96880 0.92523 0.90713 0.90986 0.88399 0.91657 0.91152 0.92355 0.87844 0.88026 0.89781 0.92318 0.91193 0.91350 0.93016 0.93945 0.90108 0.97393 0.87196 0.90661 0.90920 0.90693 0.90560 0.91266 0.91229 0.90654 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 10.45 101.05 1.06 -0.12 16 2 S -0.23 -3.03 20.24 -107.50 -2.18 -5.21 16 3 C -0.04 -0.47 2.44 -26.73 -0.07 -0.54 16 4 H 0.09 1.03 7.95 -51.93 -0.41 0.62 16 5 C -0.15 -1.11 9.10 37.16 0.34 -0.78 16 6 C -0.12 -1.32 3.52 -27.88 -0.10 -1.42 16 7 C 0.51 7.46 7.41 -10.99 -0.08 7.38 16 8 O -0.53 -9.44 14.20 5.56 0.08 -9.36 16 9 N -0.61 -8.74 2.97 -172.79 -0.51 -9.25 16 10 C 0.11 1.78 6.43 -3.71 -0.02 1.76 16 11 C -0.14 -2.50 5.30 -26.61 -0.14 -2.64 16 12 C 0.18 3.35 2.59 -67.89 -0.18 3.18 16 13 N -0.59 -13.19 2.47 -165.62 -0.41 -13.59 16 14 C -0.25 -6.25 8.42 -15.06 -0.13 -6.38 16 15 H 0.07 1.81 6.91 -52.49 -0.36 1.44 16 16 C 0.00 0.05 4.89 -17.43 -0.09 -0.03 16 17 N -0.89 -23.88 9.05 55.49 0.50 -23.38 16 18 Si 0.89 21.27 29.60 -169.99 -5.03 16.24 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 C 0.21 4.59 5.09 -4.04 -0.02 4.57 16 23 C -0.08 -1.70 4.45 -90.62 -0.40 -2.10 16 24 C -0.22 -4.07 10.18 -26.73 -0.27 -4.34 16 25 C -0.18 -3.54 10.25 -26.73 -0.27 -3.82 16 26 C -0.14 -2.27 5.31 -26.63 -0.14 -2.41 16 27 C 0.11 1.34 6.34 -3.73 -0.02 1.31 16 28 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.07 0.54 7.14 -51.92 -0.37 0.17 16 30 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.41 6.92 -51.93 -0.36 0.05 16 34 H 0.10 0.82 7.94 -51.93 -0.41 0.40 16 35 H 0.10 1.07 7.69 -51.93 -0.40 0.67 16 36 H 0.08 1.42 7.00 -51.93 -0.36 1.05 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.07 1.44 7.67 -51.93 -0.40 1.05 16 40 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 41 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 42 H 0.08 2.04 6.32 -51.93 -0.33 1.71 16 43 H 0.01 0.16 7.78 -51.93 -0.40 -0.24 16 44 H 0.11 2.76 7.49 -51.93 -0.39 2.37 16 45 H 0.07 1.27 8.03 -51.93 -0.42 0.86 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 49 H 0.07 1.26 7.08 -51.93 -0.37 0.89 16 50 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 51 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 52 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 409.65 15.07 6.17 6.17 Total: -1.00 -28.84 409.65 -11.40 -40.24 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -9.49 Total: 4.50 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -0.54 Total: -6.37 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.42 Total: -46.22 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.18 Total: -5.21 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -28.84 -11.40 -40.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733277708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.327 kcal (2) G-P(sol) polarization free energy of solvation -28.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds