Wall clock time and date at job start Sat Apr 11 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81402 * 102.99916 * 2 1 4 4 H 1.08995 * 109.47490 * 54.99747 * 3 2 1 5 5 C 1.53004 * 109.47067 * 294.99548 * 3 2 1 6 6 C 1.53002 * 109.47069 * 175.00003 * 3 2 1 7 7 C 1.50701 * 109.46868 * 294.99721 * 6 3 2 8 8 O 1.21275 * 119.99971 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00003 * 180.02562 * 7 6 3 10 10 C 1.46921 * 120.63253 * 180.02562 * 9 7 6 11 11 C 1.53198 * 108.77634 * 126.36886 * 10 9 7 12 12 C 1.53034 * 109.31238 * 54.63347 * 11 10 9 13 13 N 1.46505 * 109.45817 * 178.61291 * 12 11 10 14 14 C 1.36933 * 119.99613 * 60.00799 * 13 12 11 15 15 H 1.07994 * 120.00652 * 15.94752 * 14 13 12 16 16 C 1.38817 * 119.99668 * 195.95521 * 14 13 12 17 17 N 1.31616 * 120.00212 * 21.39526 * 16 14 13 18 18 Si 1.86800 * 119.99975 * 201.39789 * 16 14 13 19 19 H 1.48499 * 109.47327 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47184 * 119.99821 * 18 16 14 21 21 H 1.48500 * 109.47036 * 239.99669 * 18 16 14 22 22 C 1.46502 * 120.00066 * 239.99947 * 13 12 11 23 23 C 1.52992 * 109.47029 * 84.12087 * 22 13 12 24 24 C 1.53006 * 117.49931 * 243.62066 * 23 22 13 25 25 C 1.52998 * 59.99859 * 252.50756 * 24 23 22 26 26 C 1.53042 * 109.54155 * 298.63404 * 12 11 10 27 27 C 1.46931 * 120.62795 * 359.97438 * 9 7 6 28 28 H 1.09000 * 109.47547 * 300.00383 * 1 2 3 29 29 H 1.09004 * 109.46662 * 60.00285 * 1 2 3 30 30 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47128 * 179.97438 * 5 3 2 32 32 H 1.08995 * 109.47128 * 300.00421 * 5 3 2 33 33 H 1.09005 * 109.46558 * 60.00245 * 5 3 2 34 34 H 1.09000 * 109.46800 * 174.99822 * 6 3 2 35 35 H 1.09001 * 109.47168 * 55.00097 * 6 3 2 36 36 H 1.08996 * 109.58741 * 6.58079 * 10 9 7 37 37 H 1.09004 * 109.70330 * 246.22302 * 10 9 7 38 38 H 1.09003 * 109.49296 * 174.58877 * 11 10 9 39 39 H 1.09001 * 109.49182 * 294.68477 * 11 10 9 40 40 H 1.09003 * 109.45959 * 58.65881 * 12 11 10 41 41 H 0.97002 * 120.00714 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.46829 * 204.12270 * 22 13 12 43 43 H 1.08998 * 109.46731 * 324.12094 * 22 13 12 44 44 H 1.08999 * 115.55298 * 29.32522 * 23 22 13 45 45 H 1.08997 * 117.49760 * 0.02562 * 24 23 22 46 46 H 1.09000 * 117.49747 * 145.02142 * 24 23 22 47 47 H 1.08994 * 117.49921 * 252.50547 * 25 24 23 48 48 H 1.09005 * 117.49693 * 107.48838 * 25 24 23 49 49 H 1.09002 * 109.49643 * 301.41862 * 26 12 11 50 50 H 1.08996 * 109.49749 * 181.31707 * 26 12 11 51 51 H 1.08999 * 109.58742 * 353.41314 * 27 9 7 52 52 H 1.09001 * 109.58750 * 113.84841 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 0.8417 5 6 1.7429 2.4016 -1.3074 6 6 3.7370 1.9412 0.1257 7 6 4.1919 1.4271 1.4673 8 8 3.3841 0.9666 2.2459 9 7 5.4964 1.4789 1.8018 10 6 5.9552 0.9811 3.1057 11 6 7.0782 -0.0357 2.8780 12 6 8.1772 0.6059 2.0280 13 7 9.2681 -0.3531 1.8359 14 6 9.0264 -1.5498 1.2158 15 1 8.1203 -1.6889 0.6450 16 6 9.9461 -2.5842 1.3212 17 7 10.8104 -2.5979 2.3136 18 14 9.9569 -3.9569 0.0542 19 1 8.8931 -3.7102 -0.9520 20 1 11.2787 -3.9963 -0.6216 21 1 9.7074 -5.2557 0.7295 22 6 10.6175 -0.0315 2.3071 23 6 10.7376 -0.3861 3.7906 24 6 10.9949 0.7592 4.7721 25 6 12.1124 -0.2332 4.4444 26 6 7.6039 1.0052 0.6664 27 6 6.4869 2.0334 0.8689 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.9876 3.4637 -1.3073 32 1 2.2355 1.9149 -2.1492 33 1 0.6636 2.2778 -1.3970 34 1 3.9902 2.9976 0.0366 35 1 4.2339 1.3804 -0.6659 36 1 5.1266 0.5001 3.6254 37 1 6.3299 1.8111 3.7049 38 1 7.4928 -0.3411 3.8387 39 1 6.6796 -0.9077 2.3594 40 1 8.5582 1.4920 2.5357 41 1 11.4533 -3.3205 2.3871 42 1 11.3479 -0.6048 1.7362 43 1 10.8054 1.0336 2.1717 44 1 10.1075 -1.2081 4.1300 45 1 11.0782 1.7652 4.3609 46 1 10.5339 0.6906 5.7574 47 1 12.3866 -0.9545 5.2142 48 1 12.9313 0.1200 3.8176 49 1 7.2004 0.1234 0.1688 50 1 8.3926 1.4408 0.0531 51 1 6.0091 2.2466 -0.0873 52 1 6.9057 2.9506 1.2831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733277708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:45 Heat of formation + Delta-G solvation = -0.421929 kcal Electronic energy + Delta-G solvation = -28834.829145 eV Core-core repulsion = 25154.601461 eV Total energy + Delta-G solvation = -3680.227684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15619 -39.21095 -37.88372 -36.06906 -35.54362 -33.76455 -32.15075 -31.42582 -30.03364 -28.66758 -27.89325 -26.22951 -24.17635 -23.78567 -22.98079 -22.83245 -21.39498 -21.02549 -19.90664 -18.39524 -17.89524 -17.61375 -17.04731 -16.89088 -16.24785 -16.12720 -15.52851 -15.47293 -15.21869 -15.09214 -15.04299 -14.74775 -14.47671 -14.23370 -14.05203 -13.68853 -13.50353 -13.31219 -13.24601 -13.09717 -13.03005 -12.82848 -12.67993 -12.43562 -12.33806 -12.26667 -12.22684 -12.15243 -12.01573 -11.98567 -11.77515 -11.43852 -11.25749 -10.79431 -10.75028 -10.62507 -10.48938 -10.10660 -9.52648 -8.65209 -8.46965 -7.71880 -5.07018 0.83539 1.44467 1.50033 1.56063 1.72663 1.76780 2.13385 2.57282 3.34799 3.38040 3.51742 3.63487 3.66447 3.99430 4.15392 4.22136 4.23306 4.29626 4.31986 4.32141 4.34868 4.44919 4.46009 4.50691 4.56220 4.57847 4.65482 4.73585 4.77605 4.83933 4.86745 4.88863 4.89875 4.92372 4.94594 5.02066 5.12109 5.15672 5.23527 5.29057 5.44080 5.46744 5.55656 5.61315 5.69514 5.76443 5.84614 6.02283 6.44713 6.55372 7.29839 7.29947 8.04235 8.43587 9.29324 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.003087 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.795919 B = 9067.795756 C =10259.201430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.326 6.326 3 C -0.027 4.027 4 H 0.083 0.917 5 C -0.140 4.140 6 C -0.118 4.118 7 C 0.501 3.499 8 O -0.567 6.567 9 N -0.610 5.610 10 C 0.124 3.876 11 C -0.123 4.123 12 C 0.178 3.822 13 N -0.599 5.599 14 C -0.239 4.239 15 H 0.059 0.941 16 C -0.045 4.045 17 N -0.907 5.907 18 Si 0.938 3.062 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.304 1.304 22 C 0.213 3.787 23 C -0.101 4.101 24 C -0.191 4.191 25 C -0.183 4.183 26 C -0.134 4.134 27 C 0.114 3.886 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.144 0.856 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.028 0.972 40 H 0.070 0.930 41 H 0.241 0.759 42 H 0.045 0.955 43 H 0.031 0.969 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.038 0.962 50 H 0.078 0.922 51 H 0.109 0.891 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 16.495 -5.376 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.101 6.101 3 C -0.156 4.156 4 H 0.101 0.899 5 C -0.199 4.199 6 C -0.159 4.159 7 C 0.290 3.710 8 O -0.446 6.446 9 N -0.343 5.343 10 C 0.001 3.999 11 C -0.163 4.163 12 C 0.072 3.928 13 N -0.319 5.319 14 C -0.369 4.369 15 H 0.077 0.923 16 C -0.241 4.241 17 N -0.554 5.554 18 Si 0.770 3.230 19 H -0.203 1.203 20 H -0.220 1.220 21 H -0.232 1.232 22 C 0.087 3.913 23 C -0.121 4.121 24 C -0.228 4.228 25 C -0.220 4.220 26 C -0.174 4.174 27 C -0.008 4.008 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.162 0.838 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.116 0.884 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.103 0.897 49 H 0.057 0.943 50 H 0.096 0.904 51 H 0.127 0.873 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.177 15.267 -4.955 20.767 hybrid contribution -0.364 -1.068 -0.100 1.133 sum -13.540 14.198 -5.055 20.260 Atomic orbital electron populations 1.23347 0.91765 1.06806 1.05476 1.87480 1.10372 1.14316 1.97890 1.22897 0.97833 0.92286 1.02589 0.89868 1.22071 1.01760 1.01839 0.94242 1.21655 0.94353 1.05521 0.94332 1.21141 0.81719 0.78287 0.89810 1.90702 1.53423 1.46906 1.53587 1.48240 1.07004 1.61381 1.17674 1.21442 0.96358 0.97152 0.84962 1.22159 0.96389 0.97739 1.00003 1.20414 0.87136 0.91569 0.93714 1.44336 1.04344 1.15829 1.67413 1.19162 1.04669 0.90519 1.22570 0.92294 1.25256 1.00753 0.98972 0.99073 1.70337 1.23180 1.32908 1.28956 0.85644 0.76921 0.80087 0.80394 1.20304 1.21984 1.23246 1.20115 0.86146 0.94037 0.90963 1.22587 0.97370 0.96870 0.95320 1.23122 1.03729 0.95315 1.00680 1.22640 0.93163 1.02624 1.03609 1.22246 0.98018 0.98490 0.98680 1.21957 0.88746 0.96153 0.93951 0.90528 0.88787 0.88048 0.89187 0.91134 0.91753 0.83802 0.87578 0.91602 0.89836 0.93210 0.95297 0.91192 0.94915 0.93664 0.95055 0.91614 0.88413 0.89788 0.90799 0.89719 0.94306 0.90360 0.87315 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 10.45 113.37 1.19 -0.67 16 2 S -0.33 -8.50 20.24 -56.49 -1.14 -9.64 16 3 C -0.03 -0.51 2.44 30.60 0.07 -0.44 16 4 H 0.08 1.72 7.95 -2.39 -0.02 1.70 16 5 C -0.14 -1.63 9.10 71.98 0.66 -0.98 16 6 C -0.12 -2.17 3.52 29.85 0.11 -2.07 16 7 C 0.50 13.98 7.41 87.66 0.65 14.63 16 8 O -0.57 -20.38 14.20 -3.01 -0.04 -20.42 16 9 N -0.61 -16.42 2.97 -818.98 -2.43 -18.85 16 10 C 0.12 3.82 6.43 86.37 0.56 4.37 16 11 C -0.12 -4.62 5.30 30.67 0.16 -4.46 16 12 C 0.18 6.44 2.59 45.02 0.12 6.56 16 13 N -0.60 -27.21 2.47 -677.89 -1.67 -28.89 16 14 C -0.24 -12.45 8.42 84.04 0.71 -11.74 16 15 H 0.06 3.17 6.91 -2.91 -0.02 3.15 16 16 C -0.04 -2.42 4.89 84.86 0.41 -2.01 16 17 N -0.91 -50.55 9.05 21.65 0.20 -50.36 16 18 Si 0.94 45.28 29.60 68.60 2.03 47.31 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 21 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 22 C 0.21 9.48 5.09 86.38 0.44 9.92 16 23 C -0.10 -4.34 4.45 -10.79 -0.05 -4.38 16 24 C -0.19 -6.48 10.18 30.60 0.31 -6.17 16 25 C -0.18 -6.86 10.25 30.59 0.31 -6.54 16 26 C -0.13 -4.05 5.31 30.66 0.16 -3.89 16 27 C 0.11 2.40 6.34 86.35 0.55 2.94 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.22 7.14 -2.39 -0.02 1.20 16 30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.69 6.92 -2.38 -0.02 0.67 16 34 H 0.14 1.49 7.94 -2.39 -0.02 1.48 16 35 H 0.11 1.93 7.69 -2.39 -0.02 1.91 16 36 H 0.07 2.28 7.00 -2.39 -0.02 2.26 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.03 1.28 7.67 -2.39 -0.02 1.26 16 40 H 0.07 2.29 7.87 -2.39 -0.02 2.27 16 41 H 0.24 13.44 8.31 -92.71 -0.77 12.67 16 42 H 0.05 2.33 6.32 -2.38 -0.02 2.31 16 43 H 0.03 1.23 7.78 -2.39 -0.02 1.21 16 44 H 0.07 3.44 7.49 -2.39 -0.02 3.42 16 45 H 0.10 2.91 8.03 -2.39 -0.02 2.89 16 46 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 47 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 48 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 49 H 0.04 1.40 7.08 -2.39 -0.02 1.39 16 50 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.11 1.62 5.93 -2.39 -0.01 1.61 16 52 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -68.02 409.65 4.16 -63.87 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.87 Total: 21.91 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 6.35 Total: -4.92 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -3.91 Total: -98.10 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.04 Total: -20.42 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.14 Total: -9.64 kcal Total: -68.02 4.16 -63.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733277708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.448 kcal (2) G-P(sol) polarization free energy of solvation -68.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds