Wall clock time and date at job start Sat Apr 11 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99868 * 2 1 4 4 H 1.48502 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47201 * 299.99568 * 3 2 1 6 6 H 1.48497 * 109.47443 * 59.99922 * 3 2 1 7 7 C 1.37873 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00294 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47493 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47370 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99821 * 179.97438 * 12 11 10 14 14 O 1.21588 * 120.00173 * 5.07232 * 13 12 11 15 15 N 1.34777 * 119.99898 * 185.07111 * 13 12 11 16 16 C 1.46924 * 120.62690 * 174.96715 * 15 13 12 17 17 C 1.53190 * 108.77593 * 233.62715 * 16 15 13 18 18 C 1.53039 * 109.31265 * 305.36958 * 17 16 15 19 19 O 1.42907 * 109.46002 * 181.38147 * 18 17 16 20 20 C 1.42898 * 113.99719 * 149.99600 * 19 18 17 21 21 C 1.53005 * 109.47146 * 179.97438 * 20 19 18 22 22 H 1.08994 * 110.33267 * 305.70818 * 21 20 19 23 23 C 1.54474 * 110.37270 * 183.45059 * 21 20 19 24 24 C 1.54514 * 104.06061 * 217.19335 * 23 21 20 25 25 C 1.54471 * 104.06479 * 0.02562 * 24 23 21 26 26 O 1.44433 * 110.36505 * 67.95418 * 21 20 19 27 27 C 1.53041 * 109.53983 * 61.36040 * 18 17 16 28 28 C 1.46921 * 120.63097 * 354.98446 * 15 13 12 29 29 H 0.96991 * 119.99891 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47204 * 59.99982 * 9 7 2 31 31 H 1.09000 * 109.47172 * 300.00029 * 9 7 2 32 32 H 1.09003 * 109.47630 * 59.99848 * 10 9 7 33 33 H 1.09005 * 109.47136 * 299.99746 * 10 9 7 34 34 H 1.08996 * 109.47180 * 59.99614 * 11 10 9 35 35 H 1.09005 * 109.46636 * 299.99871 * 11 10 9 36 36 H 0.96994 * 120.00332 * 359.97438 * 12 11 10 37 37 H 1.09002 * 109.59020 * 113.84585 * 16 15 13 38 38 H 1.08995 * 109.59291 * 353.41811 * 16 15 13 39 39 H 1.09000 * 109.50493 * 185.41221 * 17 16 15 40 40 H 1.08999 * 109.52447 * 65.33071 * 17 16 15 41 41 H 1.09004 * 109.46275 * 301.35229 * 18 17 16 42 42 H 1.09001 * 109.47525 * 300.00157 * 20 19 18 43 43 H 1.09000 * 109.47241 * 60.00415 * 20 19 18 44 44 H 1.08993 * 110.51699 * 335.83724 * 23 21 20 45 45 H 1.09000 * 110.50908 * 98.41524 * 23 21 20 46 46 H 1.08999 * 110.50766 * 118.65349 * 24 23 21 47 47 H 1.09003 * 110.50708 * 241.21903 * 24 23 21 48 48 H 1.08997 * 110.37755 * 142.81043 * 25 24 23 49 49 H 1.09006 * 110.37064 * 265.03507 * 25 24 23 50 50 H 1.09001 * 109.49604 * 58.59171 * 27 18 17 51 51 H 1.09004 * 109.49821 * 178.68169 * 27 18 17 52 52 H 1.08996 * 109.59053 * 246.15586 * 28 15 13 53 53 H 1.08995 * 109.58528 * 6.58669 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1006 0.0005 13 6 1.9832 -7.3713 0.0006 14 8 0.7917 -7.5949 -0.0929 15 7 2.8547 -8.3941 0.1044 16 6 2.3746 -9.7781 0.2166 17 6 3.0065 -10.4203 1.4555 18 6 4.5289 -10.2878 1.3735 19 8 5.1234 -10.9143 2.5121 20 6 6.4232 -11.4543 2.2658 21 6 6.9601 -12.0960 3.5468 22 1 6.9336 -11.3806 4.3686 23 6 8.4000 -12.6106 3.3279 24 6 8.4565 -13.9245 4.1390 25 6 7.0438 -14.0486 4.7515 26 8 6.1917 -13.2728 3.8797 27 6 4.9132 -8.8066 1.3480 28 6 4.3029 -8.1462 0.1077 29 1 -0.4849 0.8400 -0.0004 30 1 0.6248 -2.5572 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8721 -3.6043 0.8905 33 1 2.8720 -3.6043 -0.8895 34 1 0.8540 -5.0446 -0.8902 35 1 0.8534 -5.0451 0.8897 36 1 3.3860 -5.9233 0.0008 37 1 2.6633 -10.3384 -0.6727 38 1 1.2892 -9.7815 0.3166 39 1 2.7348 -11.4751 1.4974 40 1 2.6452 -9.9158 2.3517 41 1 4.8871 -10.7714 0.4647 42 1 6.3610 -12.2074 1.4802 43 1 7.0948 -10.6556 1.9510 44 1 8.5791 -12.8065 2.2707 45 1 9.1248 -11.8918 3.7103 46 1 8.6636 -14.7698 3.4827 47 1 9.2108 -13.8572 4.9230 48 1 6.7261 -15.0911 4.7646 49 1 7.0300 -13.6358 5.7602 50 1 4.5339 -8.3169 2.2448 51 1 5.9986 -8.7129 1.3132 52 1 4.7488 -8.5733 -0.7904 53 1 4.4897 -7.0728 0.1360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083650378.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:21 Heat of formation + Delta-G solvation = -157.956363 kcal Electronic energy + Delta-G solvation = -29333.976107 eV Core-core repulsion = 25204.164347 eV Total energy + Delta-G solvation = -4129.811761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54108 -40.48784 -39.45754 -37.51220 -36.88784 -35.25670 -33.64136 -33.09127 -32.59959 -31.98128 -31.14432 -28.56100 -26.62104 -25.60166 -24.83931 -24.09495 -22.88767 -22.31043 -22.22725 -21.80284 -20.49379 -19.28977 -18.48231 -17.91234 -17.42194 -17.24588 -16.94209 -16.84397 -16.59107 -16.47872 -15.87377 -15.67750 -15.63583 -15.35801 -14.94711 -14.71175 -14.59510 -14.32068 -14.04380 -13.98450 -13.70461 -13.43194 -13.33380 -13.23620 -12.77192 -12.66339 -12.63038 -12.53738 -12.35381 -12.31466 -12.27105 -12.06519 -11.95942 -11.67750 -11.59691 -11.49296 -11.47630 -11.26969 -11.10818 -10.73712 -10.55258 -10.45007 -10.26656 -9.55866 -8.18498 -6.30049 1.42462 1.42701 1.55538 1.58904 2.07228 2.42568 2.57402 2.90993 2.95913 3.15409 3.65425 3.70900 3.75479 3.84612 3.99931 4.01368 4.09105 4.15300 4.17745 4.22848 4.26335 4.30580 4.36709 4.43163 4.50816 4.55392 4.58156 4.59963 4.63120 4.76364 4.82223 4.83296 4.89491 4.90791 4.95792 4.96435 5.02065 5.09973 5.11116 5.16952 5.16998 5.25400 5.46195 5.51740 5.55693 5.71606 5.84890 5.88191 5.90475 6.23280 6.30625 6.86935 6.93857 7.39568 7.51262 8.93878 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.001601 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.822739 B =17486.039687 C =18610.232662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.099 4.099 11 C 0.148 3.852 12 N -0.731 5.731 13 C 0.699 3.301 14 O -0.639 6.639 15 N -0.628 5.628 16 C 0.133 3.867 17 C -0.125 4.125 18 C 0.094 3.906 19 O -0.398 6.398 20 C 0.065 3.935 21 C 0.068 3.932 22 H 0.068 0.932 23 C -0.144 4.144 24 C -0.151 4.151 25 C 0.032 3.968 26 O -0.396 6.396 27 C -0.150 4.150 28 C 0.110 3.890 29 H 0.263 0.737 30 H -0.007 1.007 31 H -0.008 1.008 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.409 0.591 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.061 0.939 50 H 0.057 0.943 51 H 0.102 0.898 52 H 0.098 0.902 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.337 -30.650 4.789 38.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.137 4.137 11 C 0.024 3.976 12 N -0.389 5.389 13 C 0.400 3.600 14 O -0.520 6.520 15 N -0.366 5.366 16 C 0.011 3.989 17 C -0.163 4.163 18 C 0.037 3.963 19 O -0.318 6.318 20 C -0.012 4.012 21 C 0.011 3.989 22 H 0.086 0.914 23 C -0.182 4.182 24 C -0.189 4.189 25 C -0.044 4.044 26 O -0.316 6.316 27 C -0.189 4.189 28 C -0.012 4.012 29 H 0.071 0.929 30 H 0.011 0.989 31 H 0.010 0.990 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.248 0.752 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.114 0.886 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.116 0.884 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.120 0.880 52 H 0.116 0.884 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 22.046 -30.758 4.840 38.152 hybrid contribution 0.213 1.187 0.129 1.213 sum 22.259 -29.571 4.969 37.344 Atomic orbital electron populations 1.70123 1.07972 1.27699 1.51753 1.26029 0.95737 1.03570 0.94792 0.85353 0.79222 0.78593 0.77571 1.18110 1.20609 1.20658 1.21710 0.93788 0.91932 1.50345 0.91421 1.18951 0.94467 0.92969 0.95116 1.21584 0.98442 0.91593 1.02116 1.21093 0.91398 0.84721 1.00405 1.45221 1.10798 1.03626 1.79275 1.16096 0.84718 0.81477 0.77660 1.90875 1.16690 1.84513 1.59960 1.47382 1.06504 1.05684 1.77010 1.21480 0.99868 0.79520 0.98071 1.21929 0.94488 1.02006 0.97895 1.22076 0.92696 0.92350 0.89191 1.87977 1.32252 1.75447 1.36127 1.22768 0.84686 0.97352 0.96351 1.23165 0.90944 0.88070 0.96765 0.91438 1.22927 0.94954 0.97805 1.02480 1.22938 0.97240 0.98143 1.00566 1.23612 0.89967 0.97082 0.93754 1.89216 1.40764 1.34130 1.67510 1.22402 1.02488 0.95840 0.98174 1.21865 0.78235 1.01874 0.99243 0.92854 0.98899 0.98981 0.91391 0.91245 0.93470 0.93711 0.75186 0.89082 0.90686 0.89159 0.92945 0.89829 0.92070 0.89645 0.89503 0.88592 0.89954 0.88913 0.88431 0.92064 0.92426 0.88004 0.88359 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.45 13.29 21.45 0.28 -57.17 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 43.85 29.54 68.60 2.03 45.87 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.10 -3.88 5.27 30.59 0.16 -3.72 16 11 C 0.15 5.51 5.68 86.38 0.49 6.00 16 12 N -0.73 -21.73 5.47 -478.53 -2.62 -24.34 16 13 C 0.70 22.43 8.30 179.05 1.49 23.91 16 14 O -0.64 -26.63 15.79 -3.99 -0.06 -26.70 16 15 N -0.63 -14.18 2.97 -836.94 -2.49 -16.67 16 16 C 0.13 2.67 6.42 86.36 0.55 3.22 16 17 C -0.12 -2.25 5.73 30.67 0.18 -2.07 16 18 C 0.09 1.37 2.57 30.62 0.08 1.45 16 19 O -0.40 -7.25 9.99 -148.60 -1.48 -8.74 16 20 C 0.06 0.78 5.35 71.98 0.39 1.17 16 21 C 0.07 0.89 3.57 31.10 0.11 1.00 16 22 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 23 C -0.14 -0.98 6.63 31.61 0.21 -0.77 16 24 C -0.15 -0.98 7.09 31.61 0.22 -0.75 16 25 C 0.03 0.36 7.63 72.48 0.55 0.91 16 26 O -0.40 -7.27 11.35 -148.60 -1.69 -8.95 16 27 C -0.15 -1.98 5.69 30.67 0.17 -1.81 16 28 C 0.11 1.53 6.43 86.36 0.56 2.09 16 29 H 0.26 15.14 8.31 -92.72 -0.77 14.37 16 30 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.41 9.24 5.93 -92.71 -0.55 8.69 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.91 7.03 -2.39 -0.02 1.89 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 0.87 7.79 -2.38 -0.02 0.85 16 42 H 0.06 0.68 8.08 -2.39 -0.02 0.66 16 43 H 0.09 0.61 7.84 -2.39 -0.02 0.59 16 44 H 0.09 0.44 7.87 -2.39 -0.02 0.43 16 45 H 0.10 0.37 8.14 -2.39 -0.02 0.36 16 46 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 50 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.10 0.85 7.84 -2.38 -0.02 0.83 16 52 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.09 1.14 5.56 -2.39 -0.01 1.13 16 Total: -1.00 -78.45 418.03 0.30 -78.15 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.32 Total: 16.29 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 6.00 Total: 2.25 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -4.82 Total: -98.18 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -3.23 Total: -44.39 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -78.45 0.30 -78.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083650378.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.807 kcal (2) G-P(sol) polarization free energy of solvation -78.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds