Wall clock time and date at job start Sat Apr 11 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99814 * 2 1 4 4 H 1.48506 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47351 * 300.00136 * 3 2 1 6 6 H 1.48499 * 109.47311 * 60.00372 * 3 2 1 7 7 C 1.37880 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99888 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00165 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47362 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00244 * 270.00586 * 10 9 7 12 12 C 1.53005 * 109.46973 * 269.99835 * 11 10 9 13 13 N 1.46893 * 109.46786 * 179.97438 * 12 11 10 14 14 C 1.47016 * 111.00147 * 293.63267 * 13 12 11 15 15 C 1.53103 * 109.25727 * 177.61246 * 14 13 12 16 16 O 1.43011 * 109.25855 * 56.85101 * 15 14 13 17 17 C 1.43015 * 113.73600 * 301.32370 * 16 15 14 18 18 C 1.47016 * 111.00091 * 170.00123 * 13 12 11 19 19 C 1.34780 * 119.99673 * 90.00232 * 10 9 7 20 20 O 1.21280 * 119.99914 * 180.02562 * 19 10 9 21 21 C 1.50698 * 119.99954 * 0.02562 * 19 10 9 22 22 C 1.53003 * 109.46983 * 180.02562 * 21 19 10 23 23 O 1.42903 * 110.42757 * 300.69861 * 22 21 19 24 24 C 1.54886 * 110.49086 * 63.23532 * 22 21 19 25 25 C 1.55237 * 102.58760 * 156.67579 * 24 22 21 26 26 C 1.54263 * 104.23479 * 322.08967 * 25 24 22 27 27 C 1.53883 * 106.59602 * 23.60818 * 26 25 24 28 28 H 0.96997 * 120.00156 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.46705 * 60.00436 * 9 7 2 30 30 H 1.08992 * 109.47453 * 300.00997 * 9 7 2 31 31 H 1.09003 * 109.47140 * 29.99357 * 11 10 9 32 32 H 1.08998 * 109.46963 * 149.99527 * 11 10 9 33 33 H 1.08998 * 109.47152 * 300.00051 * 12 11 10 34 34 H 1.09002 * 109.46810 * 59.99932 * 12 11 10 35 35 H 1.09002 * 109.50590 * 297.54420 * 14 13 12 36 36 H 1.08995 * 109.50515 * 57.67865 * 14 13 12 37 37 H 1.08999 * 109.50410 * 296.90814 * 15 14 13 38 38 H 1.09004 * 109.54063 * 176.80540 * 15 14 13 39 39 H 1.08996 * 109.51172 * 298.73733 * 17 16 15 40 40 H 1.09002 * 109.54088 * 178.62993 * 17 16 15 41 41 H 1.09003 * 109.50372 * 302.32843 * 18 13 12 42 42 H 1.09000 * 109.50760 * 62.41029 * 18 13 12 43 43 H 1.08998 * 109.47277 * 59.99960 * 21 19 10 44 44 H 1.09006 * 109.46967 * 299.99538 * 21 19 10 45 45 H 0.96700 * 114.00311 * 59.30303 * 23 22 21 46 46 H 1.08992 * 110.75840 * 275.07355 * 24 22 21 47 47 H 1.09005 * 110.75093 * 38.44017 * 24 22 21 48 48 H 1.08995 * 110.47004 * 203.39889 * 25 24 22 49 49 H 1.09005 * 110.46506 * 80.77731 * 25 24 22 50 50 H 1.08995 * 110.03213 * 264.32882 * 26 25 24 51 51 H 1.09002 * 110.03526 * 142.88826 * 26 25 24 52 52 H 1.09001 * 110.03144 * 240.71147 * 27 26 25 53 53 H 1.09000 * 110.03231 * 119.28794 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6792 -4.1694 -1.2692 12 6 1.7485 -5.3007 -1.7110 13 7 2.2256 -5.8584 -2.9834 14 6 2.1069 -4.8732 -4.0681 15 6 2.6688 -5.4737 -5.3595 16 8 1.9763 -6.6897 -5.6545 17 6 2.0716 -7.6721 -4.6196 18 6 1.5036 -7.0939 -3.3208 19 6 2.6409 -4.1249 1.1667 20 8 3.4293 -5.0465 1.1668 21 6 2.1507 -3.5525 2.4718 22 6 2.7973 -4.3078 3.6347 23 8 2.4714 -5.6976 3.5696 24 6 4.3334 -4.1101 3.6224 25 6 4.7214 -4.3814 5.1008 26 6 3.5701 -3.7570 5.9158 27 6 2.3466 -3.7102 4.9836 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8895 31 1 2.6869 -3.3878 -2.0289 32 1 3.6886 -4.5594 -1.1388 33 1 1.7406 -6.0823 -0.9514 34 1 0.7390 -4.9106 -1.8414 35 1 1.0577 -4.6158 -4.2128 36 1 2.6699 -3.9766 -3.8085 37 1 3.7312 -5.6814 -5.2320 38 1 2.5316 -4.7686 -6.1793 39 1 3.1166 -7.9439 -4.4707 40 1 1.5023 -8.5572 -4.9036 41 1 1.6261 -7.8184 -2.5156 42 1 0.4446 -6.8721 -3.4528 43 1 1.0671 -3.6550 2.5292 44 1 2.4196 -2.4978 2.5297 45 1 2.7575 -6.1309 2.7538 46 1 4.8102 -4.8296 2.9569 47 1 4.5892 -3.0897 3.3367 48 1 5.6668 -3.8956 5.3421 49 1 4.7836 -5.4535 5.2879 50 1 3.8390 -2.7485 6.2298 51 1 3.3519 -4.3743 6.7873 52 1 2.0218 -2.6790 4.8453 53 1 1.5348 -4.3047 5.4028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118882997.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:36 Heat of formation + Delta-G solvation = -157.205435 kcal Electronic energy + Delta-G solvation = -31627.270950 eV Core-core repulsion = 27497.491752 eV Total energy + Delta-G solvation = -4129.779198 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42398 -40.54507 -39.37014 -37.37733 -36.41135 -35.51570 -34.55965 -32.47142 -32.12591 -30.80819 -29.62940 -29.06254 -27.59774 -26.14190 -25.05833 -24.88866 -23.22890 -21.71674 -21.38682 -20.80394 -20.03442 -18.65992 -18.00118 -17.81000 -17.45879 -17.14782 -16.83990 -16.54163 -16.43894 -16.25803 -16.01390 -15.91991 -15.82028 -15.50902 -14.87552 -14.62980 -14.43702 -14.36400 -14.01189 -13.87972 -13.51039 -13.38707 -13.32199 -13.13667 -12.86847 -12.83633 -12.64385 -12.51607 -12.34958 -12.33786 -12.17007 -12.08881 -11.92915 -11.89705 -11.72440 -11.61841 -11.47135 -11.28698 -10.75754 -10.73655 -10.69991 -10.52062 -9.61532 -9.43343 -8.23552 -6.38376 1.38905 1.43012 1.52566 1.68673 2.10742 2.39977 2.80943 2.96471 3.07505 3.30145 3.56517 3.65593 3.79183 3.87339 3.90851 3.96736 4.00088 4.09786 4.17156 4.30135 4.30433 4.35984 4.39718 4.43156 4.56256 4.56850 4.64475 4.69519 4.73892 4.77177 4.80061 4.82024 4.85909 4.89358 4.92478 4.94782 4.99224 5.05026 5.08994 5.14709 5.18314 5.26662 5.40950 5.51854 5.60513 5.72712 5.86857 5.89089 6.01303 6.14787 6.49349 6.76267 6.82883 7.25651 7.37348 8.82397 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007756 B = 0.003938 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3609.146289 B = 7108.261740 C =10000.577358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.025 3.975 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.254 3.746 10 N -0.596 5.596 11 C 0.129 3.871 12 C 0.061 3.939 13 N -0.537 5.537 14 C 0.011 3.989 15 C 0.068 3.932 16 O -0.403 6.403 17 C 0.066 3.934 18 C 0.016 3.984 19 C 0.519 3.481 20 O -0.580 6.580 21 C -0.155 4.155 22 C 0.146 3.854 23 O -0.569 6.569 24 C -0.145 4.145 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.115 4.115 28 H 0.268 0.732 29 H 0.016 0.984 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.032 0.968 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.115 0.885 39 H 0.065 0.935 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.035 0.965 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.381 0.619 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.063 0.937 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.082 0.918 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.845 -9.878 -0.170 11.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.072 0.928 9 C 0.133 3.867 10 N -0.326 5.326 11 C 0.006 3.994 12 C -0.068 4.068 13 N -0.262 5.262 14 C -0.117 4.117 15 C -0.009 4.009 16 O -0.322 6.322 17 C -0.011 4.011 18 C -0.112 4.112 19 C 0.310 3.690 20 O -0.463 6.463 21 C -0.194 4.194 22 C 0.104 3.896 23 O -0.379 6.379 24 C -0.183 4.183 25 C -0.153 4.153 26 C -0.155 4.155 27 C -0.152 4.152 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.133 0.867 39 H 0.083 0.917 40 H 0.137 0.863 41 H 0.113 0.887 42 H 0.053 0.947 43 H 0.109 0.891 44 H 0.120 0.880 45 H 0.233 0.767 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.093 0.907 52 H 0.101 0.899 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.215 -10.241 0.265 11.495 hybrid contribution -0.616 1.414 -0.623 1.663 sum 4.599 -8.827 -0.358 9.960 Atomic orbital electron populations 1.70011 1.07259 1.28183 1.50389 1.25614 0.95480 1.02222 0.94278 0.85559 0.78947 0.79613 0.77906 1.19432 1.20559 1.20203 1.21650 0.93266 0.91405 1.51940 0.92809 1.19078 0.87429 0.82953 0.97236 1.48166 1.44946 1.34107 1.05336 1.21183 0.97940 0.95082 0.85220 1.22227 0.96016 0.97158 0.91428 1.62166 1.56278 1.05670 1.02131 1.22919 1.00167 0.96154 0.92448 1.22740 0.96117 0.86160 0.95847 1.87944 1.75253 1.26013 1.42998 1.22784 1.01724 0.91245 0.85300 1.22871 0.95946 0.92479 0.99861 1.20758 0.80096 0.82058 0.86129 1.90472 1.36776 1.31198 1.87868 1.22356 1.02489 1.02421 0.92178 1.21783 0.93519 0.80940 0.93314 1.86328 1.83377 1.22241 1.45978 1.23164 0.95497 1.01556 0.98034 1.22352 0.98639 1.00839 0.93498 1.22106 0.93804 1.01665 0.97893 1.22214 0.99346 1.00890 0.92774 0.92289 0.96583 0.95211 0.91044 0.90610 0.91060 0.95767 0.94946 0.89346 0.91588 0.86741 0.91703 0.86271 0.88707 0.94712 0.89090 0.88015 0.76672 0.91525 0.91751 0.90538 0.91833 0.90500 0.90736 0.89932 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.31 13.29 21.45 0.28 -49.03 16 2 C 0.02 1.26 5.46 84.66 0.46 1.72 16 3 Si 0.95 40.51 29.54 68.60 2.03 42.54 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -27.23 9.28 25.60 0.24 -26.99 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.25 11.72 4.97 85.63 0.43 12.15 16 10 N -0.60 -23.96 2.46 -826.14 -2.03 -25.99 16 11 C 0.13 4.65 5.34 86.38 0.46 5.11 16 12 C 0.06 1.94 5.28 86.31 0.46 2.40 16 13 N -0.54 -14.79 4.73 -895.21 -4.23 -19.02 16 14 C 0.01 0.29 5.44 86.32 0.47 0.76 16 15 C 0.07 1.48 7.01 72.02 0.50 1.98 16 16 O -0.40 -9.61 10.83 -148.98 -1.61 -11.22 16 17 C 0.07 1.31 7.01 72.01 0.50 1.81 16 18 C 0.02 0.38 5.64 86.31 0.49 0.87 16 19 C 0.52 20.17 7.25 87.66 0.64 20.81 16 20 O -0.58 -22.91 11.91 14.38 0.17 -22.74 16 21 C -0.15 -5.51 3.41 29.85 0.10 -5.41 16 22 C 0.15 4.60 0.82 -9.72 -0.01 4.59 16 23 O -0.57 -19.18 13.02 -131.57 -1.71 -20.90 16 24 C -0.14 -4.39 5.26 32.01 0.17 -4.22 16 25 C -0.12 -2.83 6.82 31.79 0.22 -2.61 16 26 C -0.12 -2.64 6.80 31.32 0.21 -2.43 16 27 C -0.11 -3.08 6.12 31.32 0.19 -2.89 16 28 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 29 H 0.02 0.80 8.07 -2.38 -0.02 0.78 16 30 H 0.03 1.43 6.44 -2.39 -0.02 1.42 16 31 H 0.07 2.62 6.44 -2.39 -0.02 2.60 16 32 H 0.08 2.81 7.42 -2.39 -0.02 2.80 16 33 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 34 H 0.02 0.83 8.12 -2.39 -0.02 0.81 16 35 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 2.34 6.38 -2.39 -0.02 2.33 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 42 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.09 3.28 7.40 -2.39 -0.02 3.26 16 44 H 0.10 3.83 8.00 -2.38 -0.02 3.81 16 45 H 0.38 13.03 6.58 -74.06 -0.49 12.54 16 46 H 0.07 2.23 6.87 -2.39 -0.02 2.22 16 47 H 0.06 2.00 8.06 -2.38 -0.02 1.98 16 48 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 50 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.08 2.14 7.84 -2.39 -0.02 2.12 16 53 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 Total: -1.00 -57.31 408.37 -1.18 -58.49 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: 0.39 Total: 40.22 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 5.53 Total: 7.66 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -5.98 Total: -94.04 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -3.15 Total: -54.86 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -57.31 -1.18 -58.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118882997.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.717 kcal (2) G-P(sol) polarization free energy of solvation -57.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds