Wall clock time and date at job start Sat Apr 11 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53007 * 109.46856 * 2 1 4 4 C 1.50693 * 110.64067 * 294.16157 * 3 2 1 5 5 O 1.21286 * 119.99648 * 114.73686 * 4 3 2 6 6 N 1.34779 * 120.00391 * 294.73451 * 4 3 2 7 7 C 1.46498 * 119.99894 * 354.60362 * 6 4 3 8 8 C 1.46503 * 120.00152 * 174.59788 * 6 4 3 9 9 C 1.50701 * 109.47054 * 90.00112 * 8 6 4 10 10 H 1.08005 * 119.99720 * 0.02562 * 9 8 6 11 11 C 1.37874 * 120.00131 * 180.02562 * 9 8 6 12 12 N 1.31512 * 119.99758 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99803 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47176 * 269.99907 * 13 11 9 15 15 H 1.48503 * 109.47400 * 30.00136 * 13 11 9 16 16 H 1.48503 * 109.47023 * 150.00031 * 13 11 9 17 17 C 1.55156 * 110.71590 * 171.02014 * 3 2 1 18 18 C 1.54901 * 101.58204 * 205.95647 * 17 3 2 19 19 N 1.47424 * 104.83039 * 37.01294 * 18 17 3 20 20 C 1.34776 * 125.64789 * 155.90681 * 19 18 17 21 21 O 1.21517 * 119.99938 * 179.97438 * 20 19 18 22 22 O 1.34633 * 120.00214 * 359.97438 * 20 19 18 23 23 C 1.45204 * 116.99949 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.47420 * 59.99803 * 23 22 20 25 25 C 1.53003 * 109.47039 * 179.97438 * 23 22 20 26 26 C 1.53002 * 109.47043 * 299.99413 * 23 22 20 27 27 C 1.47023 * 108.70465 * 335.86929 * 19 18 17 28 28 H 1.08996 * 109.46702 * 176.29740 * 1 2 3 29 29 H 1.09004 * 109.46512 * 296.29390 * 1 2 3 30 30 H 1.08997 * 109.47210 * 56.29549 * 1 2 3 31 31 H 1.08999 * 109.47046 * 240.00626 * 2 1 3 32 32 H 1.08995 * 109.47203 * 120.00485 * 2 1 3 33 33 H 1.09004 * 109.46826 * 265.07337 * 7 6 4 34 34 H 1.09003 * 109.47061 * 25.06711 * 7 6 4 35 35 H 1.08998 * 109.47379 * 145.06795 * 7 6 4 36 36 H 1.09002 * 109.46738 * 330.00341 * 8 6 4 37 37 H 1.08994 * 109.47377 * 210.00232 * 8 6 4 38 38 H 0.97002 * 120.00344 * 0.02562 * 12 11 9 39 39 H 1.08995 * 111.00851 * 324.03600 * 17 3 2 40 40 H 1.09003 * 111.00120 * 87.88741 * 17 3 2 41 41 H 1.09000 * 110.37171 * 155.85196 * 18 17 3 42 42 H 1.09003 * 110.37296 * 278.17347 * 18 17 3 43 43 H 1.08994 * 109.47125 * 59.99779 * 24 23 22 44 44 H 1.08999 * 109.47147 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.46949 * 299.99803 * 24 23 22 46 46 H 1.08995 * 109.47221 * 59.99539 * 25 23 22 47 47 H 1.08999 * 109.47354 * 179.97438 * 25 23 22 48 48 H 1.09003 * 109.46886 * 299.99661 * 25 23 22 49 49 H 1.08999 * 109.47090 * 60.00342 * 26 23 22 50 50 H 1.08999 * 109.47002 * 180.02562 * 26 23 22 51 51 H 1.08995 * 109.47073 * 300.00373 * 26 23 22 52 52 H 1.09004 * 109.88705 * 241.64409 * 27 19 18 53 53 H 1.09004 * 109.88411 * 120.47466 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6729 2.1358 -1.2867 5 8 0.9013 3.0715 -1.2725 6 7 2.2018 1.7161 -2.4531 7 6 3.2224 0.6651 -2.4585 8 6 1.7561 2.3107 -3.7156 9 6 2.6200 3.5015 -4.0426 10 1 3.4212 3.7865 -3.3768 11 6 2.3875 4.2270 -5.1918 12 7 1.4116 3.8802 -6.0022 13 14 3.4588 5.7026 -5.5973 14 1 2.8631 6.9255 -5.0017 15 1 4.8200 5.4938 -5.0416 16 1 3.5450 5.8615 -7.0713 17 6 3.5745 1.4823 0.2265 18 6 3.7602 2.8869 0.8526 19 7 2.5777 3.0761 1.7125 20 6 2.5046 3.8985 2.7778 21 8 1.4737 3.9752 3.4165 22 8 3.5737 4.6350 3.1343 23 6 3.4231 5.4981 4.2922 24 6 3.0802 4.6506 5.5189 25 6 4.7323 6.2495 4.5418 26 6 2.2985 6.5033 4.0361 27 6 1.4911 2.2198 1.2150 28 1 -0.3632 -1.0255 -0.0664 29 1 -0.3632 0.4553 0.9214 30 1 -0.3633 0.5702 -0.8549 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.2127 1.1204 -2.4714 34 1 3.1165 0.0512 -1.5640 35 1 3.0974 0.0417 -3.3438 36 1 0.7183 2.6300 -3.6204 37 1 1.8375 1.5728 -4.5136 38 1 0.8551 3.1142 -5.7914 39 1 3.8875 0.7012 0.9193 40 1 4.1111 1.4019 -0.7188 41 1 4.6719 2.9190 1.4491 42 1 3.7886 3.6489 0.0737 43 1 3.8815 3.9345 5.7013 44 1 2.9677 5.2985 6.3882 45 1 2.1477 4.1150 5.3414 46 1 4.9771 6.8532 3.6680 47 1 4.6192 6.8978 5.4107 48 1 5.5333 5.5331 4.7244 49 1 1.3659 5.9677 3.8585 50 1 2.1857 7.1515 4.9052 51 1 2.5428 7.1071 3.1622 52 1 0.6444 2.8348 0.9098 53 1 1.1833 1.5215 1.9934 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125860623.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:49 Heat of formation + Delta-G solvation = -130.646712 kcal Electronic energy + Delta-G solvation = -32386.757057 eV Core-core repulsion = 28258.129532 eV Total energy + Delta-G solvation = -4128.627525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32481 -41.47577 -39.10382 -37.67421 -36.91110 -35.72411 -34.97511 -34.50146 -31.81497 -29.50744 -29.43043 -28.40195 -28.30650 -27.53004 -26.31935 -25.09877 -23.52462 -23.01721 -22.28778 -20.50829 -19.90043 -19.13628 -18.94790 -18.00707 -17.56076 -17.33524 -17.12379 -16.61717 -16.21463 -15.89934 -15.60798 -15.49237 -15.12513 -14.92087 -14.78673 -14.47810 -14.30499 -14.22540 -13.94827 -13.82647 -13.64031 -13.53132 -13.37026 -13.16525 -13.09745 -12.95911 -12.93332 -12.89514 -12.87281 -12.54364 -12.50133 -12.39434 -12.29595 -12.08933 -11.96380 -11.74924 -11.54619 -11.43230 -11.20711 -11.15711 -10.63992 -10.55189 -9.89116 -9.48140 -8.70309 -6.45752 0.97691 1.46417 1.55496 1.66072 1.70777 1.73406 2.19090 2.51258 2.78025 3.08519 3.19834 3.36999 3.48758 3.72619 3.75994 3.77274 3.92080 4.03702 4.15817 4.25908 4.35785 4.39308 4.43044 4.51221 4.53300 4.58981 4.60947 4.66173 4.67928 4.72335 4.73404 4.79363 4.81619 4.85222 4.87325 4.89224 4.94001 5.00657 5.02889 5.05938 5.12675 5.19192 5.24974 5.31852 5.33166 5.40487 5.54158 5.80861 6.13100 6.31579 6.44074 6.64912 7.16631 7.26722 7.38895 8.64696 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.003684 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.155675 B = 7599.530698 C = 9287.954765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.104 4.104 3 C -0.082 4.082 4 C 0.514 3.486 5 O -0.596 6.596 6 N -0.599 5.599 7 C 0.061 3.939 8 C 0.248 3.752 9 C -0.611 4.611 10 H 0.044 0.956 11 C -0.032 4.032 12 N -0.933 5.933 13 Si 1.117 2.883 14 H -0.286 1.286 15 H -0.264 1.264 16 H -0.274 1.274 17 C -0.124 4.124 18 C 0.099 3.901 19 N -0.603 5.603 20 C 0.663 3.337 21 O -0.593 6.593 22 O -0.365 6.365 23 C 0.121 3.879 24 C -0.175 4.175 25 C -0.134 4.134 26 C -0.183 4.183 27 C 0.148 3.852 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.017 0.983 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.071 0.929 36 H -0.014 1.014 37 H 0.023 0.977 38 H 0.255 0.745 39 H 0.137 0.863 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.037 0.963 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.056 0.944 50 H 0.097 0.903 51 H 0.051 0.949 52 H 0.045 0.955 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.499 -8.258 22.001 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.142 4.142 3 C -0.086 4.086 4 C 0.303 3.697 5 O -0.477 6.477 6 N -0.329 5.329 7 C -0.080 4.080 8 C 0.126 3.874 9 C -0.650 4.650 10 H 0.063 0.937 11 C -0.230 4.230 12 N -0.570 5.570 13 Si 0.938 3.062 14 H -0.213 1.213 15 H -0.188 1.188 16 H -0.199 1.199 17 C -0.161 4.161 18 C -0.023 4.023 19 N -0.344 5.344 20 C 0.418 3.582 21 O -0.484 6.484 22 O -0.280 6.280 23 C 0.085 3.915 24 C -0.232 4.232 25 C -0.190 4.190 26 C -0.240 4.240 27 C 0.027 3.973 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.114 0.886 32 H 0.139 0.861 33 H 0.082 0.918 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.004 0.996 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.155 0.845 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.055 0.945 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.124 0.876 48 H 0.094 0.906 49 H 0.075 0.925 50 H 0.116 0.884 51 H 0.070 0.930 52 H 0.064 0.936 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.076 -6.472 21.187 24.337 hybrid contribution -1.238 -0.525 0.389 1.400 sum 8.838 -6.997 21.576 24.344 Atomic orbital electron populations 1.21848 0.96141 1.02751 1.00856 1.21832 0.95988 0.90271 1.06062 1.21840 0.99149 0.97807 0.89801 1.20858 0.80038 0.82941 0.85870 1.90660 1.39080 1.30898 1.87064 1.47846 1.40486 1.38637 1.05934 1.22506 0.90700 0.89899 1.04919 1.18868 0.93674 0.93133 0.81705 1.22529 1.17866 1.15112 1.09485 0.93748 1.27285 0.98597 1.04091 0.93055 1.70896 1.18889 1.27985 1.39232 0.82944 0.74568 0.72002 0.76650 1.21282 1.18844 1.19894 1.23436 0.91460 0.96851 1.04345 1.22483 0.88756 0.97862 0.93240 1.47201 1.16468 1.42932 1.27769 1.17606 0.82061 0.78239 0.80248 1.90871 1.31732 1.70109 1.55713 1.86317 1.38151 1.54023 1.49494 1.22501 0.98324 0.88502 0.82148 1.22439 1.02853 1.00954 0.96975 1.21879 0.93522 1.00136 1.03508 1.22501 0.99030 0.99256 1.03231 1.21802 0.88596 0.92237 0.94686 0.89603 0.92412 0.96366 0.88550 0.86083 0.91799 0.86362 0.91038 0.99578 0.95918 0.93517 0.84455 0.87188 0.87127 0.94465 0.91284 0.88782 0.92205 0.91930 0.87554 0.90552 0.92549 0.88406 0.93013 0.93626 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 9.46 71.99 0.68 -2.92 16 2 C -0.10 -1.93 4.58 30.60 0.14 -1.79 16 3 C -0.08 -2.21 0.26 -51.74 -0.01 -2.22 16 4 C 0.51 21.03 5.39 87.65 0.47 21.50 16 5 O -0.60 -32.04 15.07 -3.05 -0.05 -32.09 16 6 N -0.60 -24.39 2.86 -851.12 -2.43 -26.82 16 7 C 0.06 1.62 8.41 127.77 1.07 2.70 16 8 C 0.25 13.20 4.48 85.63 0.38 13.58 16 9 C -0.61 -35.64 9.39 25.60 0.24 -35.40 16 10 H 0.04 2.59 7.81 -2.91 -0.02 2.57 16 11 C -0.03 -1.90 5.46 84.65 0.46 -1.43 16 12 N -0.93 -58.54 13.65 21.45 0.29 -58.25 16 13 Si 1.12 52.06 29.90 68.60 2.05 54.12 16 14 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 15 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 17 C -0.12 -2.44 5.16 31.98 0.16 -2.28 16 18 C 0.10 2.59 6.74 86.85 0.58 3.17 16 19 N -0.60 -18.83 3.33 -942.11 -3.13 -21.96 16 20 C 0.66 22.04 7.93 129.79 1.03 23.07 16 21 O -0.59 -22.01 12.21 19.79 0.24 -21.77 16 22 O -0.37 -10.48 9.42 -55.42 -0.52 -11.00 16 23 C 0.12 2.71 1.13 -10.79 -0.01 2.70 16 24 C -0.18 -3.46 8.37 71.98 0.60 -2.86 16 25 C -0.13 -2.00 8.85 71.98 0.64 -1.36 16 26 C -0.18 -4.45 8.37 71.98 0.60 -3.85 16 27 C 0.15 4.59 4.95 86.73 0.43 5.02 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.30 7.03 -2.38 -0.02 1.29 16 30 H 0.02 0.55 7.36 -2.39 -0.02 0.53 16 31 H 0.10 1.56 5.39 -2.39 -0.01 1.55 16 32 H 0.12 1.28 8.05 -2.39 -0.02 1.26 16 33 H 0.06 1.63 7.18 -2.38 -0.02 1.61 16 34 H 0.12 2.08 3.35 -2.39 -0.01 2.07 16 35 H 0.07 1.83 7.96 -2.39 -0.02 1.81 16 36 H -0.01 -0.85 7.37 -2.39 -0.02 -0.87 16 37 H 0.02 1.20 7.81 -2.39 -0.02 1.18 16 38 H 0.26 16.17 7.22 -92.71 -0.67 15.50 16 39 H 0.14 1.48 7.98 -2.39 -0.02 1.46 16 40 H 0.11 2.13 4.61 -2.39 -0.01 2.12 16 41 H 0.11 2.26 8.04 -2.39 -0.02 2.24 16 42 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.56 5.88 -2.39 -0.01 1.54 16 46 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 47 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.06 1.75 5.88 -2.39 -0.01 1.74 16 50 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.05 1.85 6.78 -2.38 -0.02 1.83 16 53 H 0.10 2.56 7.32 -2.38 -0.02 2.54 16 Total: -1.00 -86.44 402.96 4.93 -81.51 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 1.00 Total: 18.62 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 7.48 Total: 17.63 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -5.27 Total: -107.02 kcal Atomic # 8 Polarization: -64.53 SS G_CDS: -0.33 Total: -64.86 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 2.05 Total: 54.12 kcal Total: -86.44 4.93 -81.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125860623.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.134 kcal (2) G-P(sol) polarization free energy of solvation -86.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds