Wall clock time and date at job start Sat Apr 11 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47197 * 2 1 4 4 C 1.37099 * 119.99824 * 279.73572 * 3 2 1 5 5 H 1.08001 * 119.99815 * 181.94679 * 4 3 2 6 6 C 1.38942 * 120.00158 * 1.95391 * 4 3 2 7 7 N 1.31408 * 120.00250 * 4.46171 * 6 4 3 8 8 Si 1.86801 * 120.00096 * 184.46955 * 6 4 3 9 9 H 1.48493 * 109.47247 * 89.99606 * 8 6 4 10 10 H 1.48506 * 109.46899 * 209.99528 * 8 6 4 11 11 H 1.48500 * 109.47068 * 329.99463 * 8 6 4 12 12 C 1.34780 * 120.00164 * 99.72958 * 3 2 1 13 13 O 1.21291 * 120.00066 * 179.12904 * 12 3 2 14 14 C 1.50697 * 119.99986 * 359.13189 * 12 3 2 15 15 C 1.53006 * 110.88550 * 302.91494 * 14 12 3 16 16 C 1.53007 * 109.47112 * 306.22117 * 15 14 12 17 17 C 1.55157 * 111.00904 * 66.83557 * 14 12 3 18 18 C 1.54323 * 102.94015 * 82.57277 * 17 14 12 19 19 N 1.47020 * 107.27194 * 22.19729 * 18 17 14 20 20 C 1.34779 * 125.65177 * 181.02666 * 19 18 17 21 21 O 1.21508 * 120.00490 * 180.02562 * 20 19 18 22 22 O 1.34638 * 119.99337 * 0.03574 * 20 19 18 23 23 C 1.45199 * 116.99609 * 180.02562 * 22 20 19 24 24 C 1.53004 * 109.47270 * 60.00032 * 23 22 20 25 25 C 1.53001 * 109.47555 * 180.02562 * 23 22 20 26 26 C 1.53002 * 109.47229 * 300.00195 * 23 22 20 27 27 C 1.47426 * 108.70431 * 1.05732 * 19 18 17 28 28 H 1.09001 * 109.46734 * 56.97187 * 1 2 3 29 29 H 1.08999 * 109.46633 * 176.96781 * 1 2 3 30 30 H 1.08990 * 109.47217 * 296.96866 * 1 2 3 31 31 H 1.09001 * 109.47156 * 119.99501 * 2 1 3 32 32 H 1.08996 * 109.47375 * 239.99869 * 2 1 3 33 33 H 0.96995 * 120.00744 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47221 * 66.22350 * 15 14 12 35 35 H 1.09005 * 109.47061 * 186.22164 * 15 14 12 36 36 H 1.09001 * 109.46914 * 304.77452 * 16 15 14 37 37 H 1.08998 * 109.46898 * 64.77020 * 16 15 14 38 38 H 1.08997 * 109.47153 * 184.77304 * 16 15 14 39 39 H 1.08992 * 110.72330 * 200.93804 * 17 14 12 40 40 H 1.09003 * 110.71821 * 324.21042 * 17 14 12 41 41 H 1.08999 * 109.88487 * 262.77854 * 18 17 14 42 42 H 1.08991 * 110.01020 * 141.68634 * 18 17 14 43 43 H 1.08996 * 109.47069 * 59.99974 * 24 23 22 44 44 H 1.09003 * 109.47214 * 179.97438 * 24 23 22 45 45 H 1.09001 * 109.47011 * 299.99911 * 24 23 22 46 46 H 1.08999 * 109.47141 * 59.99301 * 25 23 22 47 47 H 1.08994 * 109.47405 * 179.97438 * 25 23 22 48 48 H 1.09005 * 109.46860 * 300.00188 * 25 23 22 49 49 H 1.09001 * 109.47330 * 59.99920 * 26 23 22 50 50 H 1.09003 * 109.47196 * 180.02562 * 26 23 22 51 51 H 1.08995 * 109.47144 * 299.99674 * 26 23 22 52 52 H 1.09000 * 110.36879 * 217.03455 * 27 19 18 53 53 H 1.08997 * 110.36594 * 94.71178 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0576 2.0944 -1.1702 5 1 2.4469 3.1018 -1.1759 6 6 1.5963 1.5213 -2.3489 7 7 1.0421 0.3300 -2.3273 8 14 1.7641 2.4441 -3.9643 9 1 3.0627 2.1014 -4.5976 10 1 0.6537 2.0588 -4.8721 11 1 1.7090 3.9057 -3.7075 12 6 2.4290 1.9508 1.1504 13 8 2.8481 3.0890 1.1478 14 6 2.3674 1.1736 2.4400 15 6 0.9423 0.6914 2.7188 16 6 -0.0172 1.8823 2.6726 17 6 3.3639 -0.0156 2.4209 18 6 4.7003 0.6470 2.8167 19 7 4.3762 1.8894 3.5329 20 6 5.2713 2.7677 4.0269 21 8 4.8882 3.7658 4.6043 22 8 6.5900 2.5390 3.8804 23 6 7.4962 3.5271 4.4380 24 6 7.2634 3.6392 5.9460 25 6 8.9415 3.0996 4.1750 26 6 7.2386 4.8842 3.7800 27 6 2.9100 2.0151 3.6220 28 1 -0.3633 0.5601 -0.8616 29 1 -0.3632 -1.0262 -0.0544 30 1 -0.3633 0.4660 0.9158 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 0.7204 -0.0704 -3.1501 34 1 0.6516 -0.0389 1.9637 35 1 0.9014 0.2299 3.7055 36 1 0.3225 2.6498 3.3681 37 1 -0.0399 2.2916 1.6626 38 1 -1.0177 1.5540 2.9541 39 1 3.0767 -0.7712 3.1519 40 1 3.4288 -0.4483 1.4225 41 1 5.2802 0.8752 1.9224 42 1 5.2682 -0.0183 3.4668 43 1 7.4469 2.6724 6.4148 44 1 7.9440 4.3806 6.3647 45 1 6.2337 3.9441 6.1330 46 1 9.1071 3.0200 3.1006 47 1 9.6217 3.8415 4.5931 48 1 9.1253 2.1326 4.6434 49 1 6.2089 5.1891 3.9670 50 1 7.9192 5.6258 4.1982 51 1 7.4045 4.8044 2.7057 52 1 2.6114 3.0578 3.5140 53 1 2.5518 1.6133 4.5698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128905748.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:56 Heat of formation + Delta-G solvation = -95.316553 kcal Electronic energy + Delta-G solvation = -33133.980161 eV Core-core repulsion = 29006.884666 eV Total energy + Delta-G solvation = -4127.095495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.14637 -41.32465 -38.96219 -37.55217 -37.09094 -35.57132 -34.76397 -33.27865 -31.76126 -31.08419 -29.34220 -28.39073 -28.29484 -27.31796 -25.74530 -24.09334 -23.32086 -22.74363 -22.60304 -20.44625 -20.01128 -19.01770 -18.67325 -17.81450 -17.47665 -17.24220 -16.81639 -16.28638 -16.01651 -15.99603 -15.48572 -15.34833 -15.09542 -14.80878 -14.63144 -14.27344 -14.23119 -13.90838 -13.78462 -13.55792 -13.35234 -13.32927 -13.07695 -12.98427 -12.92793 -12.87714 -12.84465 -12.74308 -12.55095 -12.46658 -12.31494 -12.27720 -12.14349 -12.05592 -11.77880 -11.61430 -11.55428 -11.39911 -11.21488 -11.10210 -10.64999 -10.12738 -9.74068 -9.61957 -8.08264 -5.80027 1.09021 1.35121 1.40241 1.50040 1.77982 2.10813 2.27564 2.88117 3.07436 3.16207 3.48741 3.57773 3.74756 3.77219 3.79492 3.93611 4.10275 4.22093 4.28509 4.43430 4.47342 4.56021 4.58242 4.59840 4.61653 4.69016 4.73189 4.74059 4.81738 4.83641 4.86014 4.94735 4.96740 5.04197 5.08153 5.09497 5.10515 5.16514 5.23482 5.26636 5.29257 5.34016 5.37314 5.42617 5.45750 5.51513 5.78877 6.11365 6.18070 6.44880 6.65277 7.27093 7.27379 7.63413 8.17294 8.71158 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014104 B = 0.003695 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.773356 B = 7576.172127 C = 8615.174626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.109 3.891 3 N -0.448 5.448 4 C -0.331 4.331 5 H 0.061 0.939 6 C 0.002 3.998 7 N -0.872 5.872 8 Si 0.978 3.022 9 H -0.274 1.274 10 H -0.268 1.268 11 H -0.287 1.287 12 C 0.452 3.548 13 O -0.644 6.644 14 C -0.076 4.076 15 C -0.123 4.123 16 C -0.151 4.151 17 C -0.118 4.118 18 C 0.107 3.893 19 N -0.598 5.598 20 C 0.662 3.338 21 O -0.597 6.597 22 O -0.368 6.368 23 C 0.120 3.880 24 C -0.174 4.174 25 C -0.132 4.132 26 C -0.181 4.181 27 C 0.155 3.845 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.268 0.732 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.046 0.954 37 H 0.021 0.979 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.107 0.893 48 H 0.076 0.924 49 H 0.052 0.948 50 H 0.098 0.902 51 H 0.047 0.953 52 H 0.048 0.952 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.229 -6.657 13.465 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 N -0.165 5.165 4 C -0.460 4.460 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.513 5.513 8 Si 0.803 3.197 9 H -0.200 1.200 10 H -0.193 1.193 11 H -0.213 1.213 12 C 0.241 3.759 13 O -0.532 6.532 14 C -0.080 4.080 15 C -0.160 4.160 16 C -0.209 4.209 17 C -0.156 4.156 18 C -0.016 4.016 19 N -0.338 5.338 20 C 0.418 3.582 21 O -0.489 6.489 22 O -0.282 6.282 23 C 0.084 3.916 24 C -0.231 4.231 25 C -0.189 4.189 26 C -0.239 4.239 27 C 0.033 3.967 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.100 0.900 39 H 0.152 0.848 40 H 0.107 0.893 41 H 0.060 0.940 42 H 0.122 0.878 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.125 0.875 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.117 0.883 51 H 0.066 0.934 52 H 0.066 0.934 53 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.361 -5.888 13.479 16.448 hybrid contribution -0.105 1.297 -1.494 1.981 sum 7.256 -4.591 11.985 14.744 Atomic orbital electron populations 1.22337 0.96150 1.01020 1.00839 1.22174 0.95367 0.81779 1.01977 1.43901 1.54183 1.12946 1.05463 1.19533 1.41036 0.98810 0.86573 0.92138 1.25683 0.95804 0.97366 1.01035 1.70261 1.38219 1.14948 1.27830 0.85164 0.78232 0.77802 0.78459 1.20009 1.19302 1.21316 1.20323 0.82919 0.87077 0.85578 1.90508 1.53856 1.21896 1.86951 1.21825 0.98701 0.95916 0.91577 1.22163 0.89440 0.98939 1.05430 1.21784 1.00427 0.98462 1.00193 1.23049 0.91423 0.96459 1.04647 1.22146 0.98602 0.84708 0.96096 1.47120 1.05930 1.23020 1.57730 1.17635 0.81037 0.81335 0.78229 1.90842 1.80556 1.28850 1.48635 1.86307 1.14560 1.51962 1.75405 1.22487 0.88843 0.86287 0.93969 1.22430 1.03851 1.03566 0.93264 1.21867 0.90082 1.03776 1.03154 1.22483 1.03605 0.97278 1.00491 1.22081 0.76517 1.00274 0.97809 0.93199 0.92312 0.92860 0.90404 0.88870 0.92142 0.87678 0.87199 0.93503 0.95943 0.90050 0.84812 0.89270 0.94017 0.87830 0.91255 0.88678 0.92386 0.92053 0.87457 0.90497 0.92872 0.88294 0.93365 0.93388 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 8.41 71.98 0.61 -4.96 16 2 C 0.11 4.41 4.30 86.38 0.37 4.78 16 3 N -0.45 -22.08 2.65 -635.55 -1.69 -23.76 16 4 C -0.33 -18.66 9.50 84.04 0.80 -17.86 16 5 H 0.06 3.82 7.16 -2.91 -0.02 3.80 16 6 C 0.00 0.10 5.21 84.92 0.44 0.54 16 7 N -0.87 -42.25 7.29 21.66 0.16 -42.09 16 8 Si 0.98 42.75 29.55 68.60 2.03 44.78 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 C 0.45 21.67 4.98 87.66 0.44 22.11 16 13 O -0.64 -37.97 15.32 -3.07 -0.05 -38.02 16 14 C -0.08 -2.58 0.26 -51.53 -0.01 -2.59 16 15 C -0.12 -3.32 4.31 30.60 0.13 -3.19 16 16 C -0.15 -4.74 8.18 71.98 0.59 -4.15 16 17 C -0.12 -3.12 4.98 31.78 0.16 -2.96 16 18 C 0.11 3.16 6.74 86.73 0.58 3.75 16 19 N -0.60 -21.55 3.31 -942.11 -3.12 -24.66 16 20 C 0.66 25.61 7.93 129.79 1.03 26.64 16 21 O -0.60 -25.61 12.14 19.82 0.24 -25.37 16 22 O -0.37 -12.31 9.49 -55.48 -0.53 -12.84 16 23 C 0.12 3.17 1.13 -10.79 -0.01 3.16 16 24 C -0.17 -4.06 8.37 71.98 0.60 -3.45 16 25 C -0.13 -2.38 8.85 71.98 0.64 -1.74 16 26 C -0.18 -5.23 8.37 71.98 0.60 -4.63 16 27 C 0.15 5.42 4.79 86.86 0.42 5.83 16 28 H 0.05 2.30 6.06 -2.39 -0.01 2.28 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.85 3.77 -2.39 -0.01 1.84 16 31 H 0.08 2.53 3.21 -2.39 -0.01 2.52 16 32 H 0.09 4.24 5.79 -2.39 -0.01 4.23 16 33 H 0.27 12.30 8.31 -92.71 -0.77 11.53 16 34 H 0.11 2.86 3.07 -2.39 -0.01 2.85 16 35 H 0.11 2.03 8.02 -2.38 -0.02 2.01 16 36 H 0.05 1.49 7.41 -2.39 -0.02 1.47 16 37 H 0.02 0.88 6.73 -2.39 -0.02 0.87 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.13 2.23 8.04 -2.39 -0.02 2.21 16 40 H 0.09 2.54 5.92 -2.39 -0.01 2.53 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.06 1.74 5.88 -2.39 -0.01 1.73 16 46 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 49 H 0.05 1.94 5.88 -2.39 -0.01 1.92 16 50 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 52 H 0.05 2.10 7.20 -2.39 -0.02 2.09 16 53 H 0.11 2.86 7.95 -2.39 -0.02 2.84 16 Total: -1.00 -75.29 387.35 5.34 -69.94 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.91 Total: 30.75 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 7.38 Total: 21.27 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -4.64 Total: -90.52 kcal Atomic # 8 Polarization: -75.89 SS G_CDS: -0.33 Total: -76.22 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -75.29 5.34 -69.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128905748.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.374 kcal (2) G-P(sol) polarization free energy of solvation -75.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds